Wall clock time and date at job start Tue Mar 31 2020 17:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00336 * 2 1 4 4 N 1.46504 * 109.47052 * 125.00565 * 3 2 1 5 5 C 1.46497 * 119.99584 * 274.96331 * 4 3 2 6 6 C 1.50701 * 109.47372 * 269.99962 * 5 4 3 7 7 H 1.07998 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00087 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99911 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47000 * 60.00138 * 10 8 6 12 12 H 1.48498 * 109.47192 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47185 * 300.00533 * 10 8 6 14 14 C 1.34768 * 120.00194 * 94.96286 * 4 3 2 15 15 O 1.21585 * 120.00261 * 185.53297 * 14 4 3 16 16 C 1.47525 * 119.99971 * 5.54095 * 14 4 3 17 17 C 1.39740 * 120.77122 * 54.98301 * 16 14 4 18 18 C 1.38887 * 118.87571 * 179.97438 * 17 16 14 19 19 C 1.37853 * 119.43676 * 359.80068 * 18 17 16 20 20 N 1.32755 * 120.42063 * 0.36668 * 19 18 17 21 21 C 1.31857 * 122.58173 * 359.70912 * 20 19 18 22 22 O 1.35429 * 119.88600 * 180.02562 * 21 20 19 23 23 C 1.50789 * 122.25526 * 180.77317 * 19 18 17 24 24 C 1.52699 * 110.59989 * 341.95285 * 23 19 18 25 25 C 1.53310 * 108.42993 * 51.40193 * 24 23 19 26 26 C 1.50546 * 117.77021 * 179.75689 * 18 17 16 27 27 H 1.09009 * 109.24972 * 282.63940 * 26 18 17 28 28 O 1.42900 * 109.25082 * 42.10157 * 26 18 17 29 29 H 1.07999 * 120.00350 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99787 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99787 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46845 * 5.00182 * 3 2 1 33 33 H 1.08996 * 109.47222 * 245.00280 * 3 2 1 34 34 H 1.08998 * 109.47434 * 29.99959 * 5 4 3 35 35 H 1.09004 * 109.46977 * 150.00349 * 5 4 3 36 36 H 0.97002 * 120.00164 * 179.97438 * 9 8 6 37 37 H 1.07999 * 120.56219 * 359.90873 * 17 16 14 38 38 H 0.96698 * 114.00490 * 269.97940 * 22 21 20 39 39 H 1.08998 * 109.25765 * 102.24467 * 23 19 18 40 40 H 1.09009 * 109.25268 * 221.66471 * 23 19 18 41 41 H 1.08997 * 109.67525 * 171.14647 * 24 23 19 42 42 H 1.09006 * 109.66806 * 291.63667 * 24 23 19 43 43 H 1.09005 * 109.68917 * 170.35762 * 25 24 23 44 44 H 1.09006 * 109.68914 * 49.79476 * 25 24 23 45 45 H 0.96706 * 113.99725 * 300.00202 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5289 1.7627 2.4520 6 6 2.7151 3.2518 2.5890 7 1 3.1373 3.8205 1.7737 8 6 2.3456 3.8885 3.7548 9 7 1.8311 3.1962 4.7475 10 14 2.5759 5.7345 3.9243 11 1 1.7921 6.4297 2.8719 12 1 2.1046 6.1713 5.2630 13 1 4.0145 6.0699 3.7728 14 6 4.2775 0.9599 0.9572 15 8 5.0241 0.8853 1.9140 16 6 4.7769 0.6435 -0.3944 17 6 4.6514 1.5655 -1.4369 18 6 5.1359 1.2268 -2.6937 19 6 5.7299 -0.0028 -2.8821 20 7 5.8330 -0.8610 -1.8745 21 6 5.3885 -0.5903 -0.6630 22 8 5.5227 -1.5064 0.3254 23 6 6.2926 -0.4290 -4.2146 24 6 5.7281 0.4374 -5.3381 25 6 5.9226 1.9101 -4.9589 26 6 4.9827 2.2364 -3.8000 27 1 3.9532 2.2236 -4.1582 28 8 5.2900 3.5378 -3.2960 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4728 1.5169 2.5634 35 1 3.1042 1.2520 3.2243 36 1 1.5714 3.6440 5.5679 37 1 4.1847 2.5247 -1.2684 38 1 4.7756 -2.1156 0.4011 39 1 7.3778 -0.3297 -4.1949 40 1 6.0310 -1.4712 -4.3984 41 1 6.2573 0.2246 -6.2669 42 1 4.6659 0.2278 -5.4648 43 1 5.6856 2.5438 -5.8136 44 1 6.9552 2.0771 -4.6525 45 1 4.7214 3.8217 -2.5671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823090616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:08 Heat of formation + Delta-G solvation = -95.305864 kcal Electronic energy + Delta-G solvation = -29356.480517 eV Core-core repulsion = 25338.631400 eV Total energy + Delta-G solvation = -4017.849117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35059 -40.56543 -39.33825 -37.64010 -37.30650 -36.18046 -35.14832 -33.98618 -33.60391 -31.25956 -30.22258 -29.35395 -27.13174 -25.92490 -25.09121 -24.19715 -23.39587 -21.68862 -21.05376 -20.51263 -19.48642 -18.67485 -18.57128 -18.23102 -18.16505 -17.46960 -16.86628 -16.55547 -16.24296 -15.97433 -15.71161 -15.41671 -14.85557 -14.68336 -14.57936 -14.43204 -14.29488 -14.19417 -14.05334 -13.66832 -13.38786 -13.07989 -12.98907 -12.91408 -12.77427 -12.59884 -12.31597 -12.23938 -12.05744 -11.93745 -11.77040 -11.70815 -11.54047 -11.03634 -10.80234 -10.65368 -10.50305 -10.32491 -9.81663 -9.55062 -8.23957 -6.39144 -0.44470 -0.14037 1.23621 1.36931 1.41565 1.48206 1.63823 2.13610 2.29064 2.41478 2.46540 3.06590 3.26805 3.30410 3.40325 3.52280 3.58264 3.81948 4.00490 4.01598 4.14893 4.19064 4.29025 4.31150 4.41012 4.45599 4.58440 4.61481 4.74353 4.82823 4.95348 4.96397 4.99560 5.09944 5.13811 5.19373 5.22130 5.38268 5.42929 5.44797 5.64279 5.71072 5.87403 6.01959 6.39596 6.56105 6.66637 6.69047 6.70610 7.17609 7.34685 8.83557 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003890 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.259432 B = 7196.834465 C = 7875.141551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.584 5.584 5 C 0.265 3.735 6 C -0.546 4.546 7 H 0.059 0.941 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.967 3.033 11 H -0.255 1.255 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.555 3.445 15 O -0.579 6.579 16 C -0.199 4.199 17 C -0.028 4.028 18 C -0.171 4.171 19 C 0.179 3.821 20 N -0.519 5.519 21 C 0.349 3.651 22 O -0.486 6.486 23 C -0.073 4.073 24 C -0.106 4.106 25 C -0.115 4.115 26 C 0.153 3.847 27 H 0.097 0.903 28 O -0.575 6.575 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.027 0.973 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.157 0.843 38 H 0.416 0.584 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -5.816 -25.578 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.209 4.209 3 C 0.006 3.994 4 N -0.314 5.314 5 C 0.144 3.856 6 C -0.585 4.585 7 H 0.077 0.923 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.180 1.180 12 H -0.206 1.206 13 H -0.205 1.205 14 C 0.342 3.658 15 O -0.459 6.459 16 C -0.206 4.206 17 C -0.054 4.054 18 C -0.174 4.174 19 C 0.043 3.957 20 N -0.239 5.239 21 C 0.168 3.832 22 O -0.295 6.295 23 C -0.110 4.110 24 C -0.144 4.144 25 C -0.153 4.153 26 C 0.094 3.906 27 H 0.115 0.885 28 O -0.383 6.383 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.174 0.826 38 H 0.277 0.723 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.910 -6.409 -25.305 26.173 hybrid contribution -1.036 1.125 2.132 2.623 sum 0.874 -5.285 -23.173 23.784 Atomic orbital electron populations 1.24066 0.95225 1.03159 0.97373 1.23227 0.96919 0.97961 1.02751 1.21011 0.92615 0.96776 0.89012 1.48098 1.08433 1.62899 1.11922 1.18763 0.93806 0.93972 0.79040 1.21666 1.42226 0.93407 1.01163 0.92261 1.25844 0.94419 1.03632 0.94991 1.70048 1.42893 1.38045 1.05678 0.85482 0.78470 0.79042 0.77934 1.17951 1.20571 1.20476 1.18316 0.82345 0.77127 0.88011 1.90764 1.57350 1.54342 1.43443 1.20887 1.06126 0.98657 0.94892 1.21694 0.94433 0.98569 0.90664 1.21420 1.01619 0.97828 0.96492 1.21678 0.91097 0.88246 0.94700 1.67158 1.20122 1.37114 0.99499 1.18994 0.90721 0.87575 0.85879 1.84745 1.48572 1.47174 1.49022 1.20668 1.01172 1.02039 0.87152 1.21563 1.03111 0.91868 0.97844 1.21616 0.99229 0.97850 0.96559 1.20766 1.00867 0.79049 0.89924 0.88527 1.86560 1.63307 1.32577 1.55849 0.86479 0.87765 0.87817 0.89504 0.88092 0.95527 0.98541 0.92372 0.82605 0.72335 0.88753 0.88105 0.87292 0.89821 0.88497 0.91739 0.76157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 14.32 67.78 0.97 -2.76 16 2 C -0.19 -5.14 9.84 25.65 0.25 -4.89 16 3 C 0.13 3.95 5.69 85.63 0.49 4.44 16 4 N -0.58 -24.92 2.44 -834.30 -2.04 -26.95 16 5 C 0.26 14.25 5.22 85.63 0.45 14.70 16 6 C -0.55 -30.86 9.39 25.60 0.24 -30.61 16 7 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 10 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.55 24.77 6.82 86.69 0.59 25.36 16 15 O -0.58 -32.48 16.39 -2.89 -0.05 -32.53 16 16 C -0.20 -6.88 4.91 -19.97 -0.10 -6.98 16 17 C -0.03 -0.74 6.77 22.79 0.15 -0.59 16 18 C -0.17 -3.67 5.57 -19.85 -0.11 -3.78 16 19 C 0.18 4.01 6.63 42.36 0.28 4.29 16 20 N -0.52 -14.96 10.18 -296.23 -3.02 -17.98 16 21 C 0.35 11.66 7.77 85.19 0.66 12.32 16 22 O -0.49 -16.56 12.83 -86.15 -1.11 -17.67 16 23 C -0.07 -0.99 5.91 29.78 0.18 -0.82 16 24 C -0.11 -0.84 5.97 30.60 0.18 -0.66 16 25 C -0.12 -1.34 5.62 30.61 0.17 -1.17 16 26 C 0.15 2.37 3.49 29.71 0.10 2.47 16 27 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 28 O -0.57 -11.02 13.14 -148.98 -1.96 -12.98 16 29 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.10 2.34 7.84 -2.91 -0.02 2.32 16 31 H 0.10 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.09 2.70 7.76 -2.39 -0.02 2.68 16 33 H 0.10 2.56 4.43 -2.39 -0.01 2.55 16 34 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 35 H 0.00 -0.22 7.35 -2.39 -0.02 -0.24 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.16 3.61 6.22 -2.91 -0.02 3.59 16 38 H 0.42 9.88 9.06 -74.06 -0.67 9.21 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.08 0.53 8.10 -2.38 -0.02 0.51 16 43 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 45 H 0.39 5.81 7.38 -74.05 -0.55 5.26 16 Total: -1.00 -82.58 375.78 -1.06 -83.64 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.18 Total: 21.42 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 4.97 Total: 12.39 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -4.77 Total: -100.42 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -3.11 Total: -63.18 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -82.58 -1.06 -83.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.667 kcal (2) G-P(sol) polarization free energy of solvation -82.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds