Wall clock time and date at job start Tue Mar 31 2020 17:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00000 * 2 1 4 4 N 1.46505 * 109.47093 * 125.00466 * 3 2 1 5 5 C 1.46504 * 119.99870 * 274.96788 * 4 3 2 6 6 C 1.50709 * 109.46811 * 269.99874 * 5 4 3 7 7 H 1.07997 * 120.00111 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99624 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00206 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99383 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47314 * 59.99986 * 10 8 6 12 12 H 1.48503 * 109.46946 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47241 * 299.99364 * 10 8 6 14 14 C 1.34770 * 120.00183 * 94.96372 * 4 3 2 15 15 O 1.21589 * 120.00123 * 185.54095 * 14 4 3 16 16 C 1.47526 * 119.99940 * 5.53968 * 14 4 3 17 17 C 1.39736 * 120.77239 * 54.98737 * 16 14 4 18 18 C 1.38884 * 118.87867 * 180.25406 * 17 16 14 19 19 C 1.37848 * 119.43631 * 359.75052 * 18 17 16 20 20 N 1.32753 * 120.42286 * 0.16684 * 19 18 17 21 21 C 1.31859 * 122.58007 * 359.93138 * 20 19 18 22 22 O 1.35431 * 119.88713 * 180.02562 * 21 20 19 23 23 C 1.50794 * 122.25261 * 179.66832 * 19 18 17 24 24 C 1.52694 * 110.60505 * 18.35086 * 23 19 18 25 25 C 1.53309 * 108.44522 * 308.61820 * 24 23 19 26 26 C 1.50551 * 117.76573 * 180.83231 * 18 17 16 27 27 H 1.09003 * 109.42894 * 76.77602 * 26 18 17 28 28 O 1.42909 * 109.11468 * 317.28752 * 26 18 17 29 29 H 1.08004 * 120.00131 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00022 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99738 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47364 * 5.00365 * 3 2 1 33 33 H 1.08996 * 109.47291 * 245.00296 * 3 2 1 34 34 H 1.08999 * 109.47483 * 29.99273 * 5 4 3 35 35 H 1.08993 * 109.46978 * 150.00031 * 5 4 3 36 36 H 0.97004 * 119.99767 * 180.02562 * 9 8 6 37 37 H 1.08009 * 120.56108 * 359.97438 * 17 16 14 38 38 H 0.96696 * 114.00508 * 269.98234 * 22 21 20 39 39 H 1.08998 * 109.25121 * 138.64759 * 23 19 18 40 40 H 1.09005 * 109.25087 * 258.06341 * 23 19 18 41 41 H 1.09005 * 109.63794 * 68.30223 * 24 23 19 42 42 H 1.09000 * 109.64582 * 188.71403 * 24 23 19 43 43 H 1.08999 * 109.69165 * 189.61818 * 25 24 23 44 44 H 1.09000 * 109.69395 * 310.16122 * 25 24 23 45 45 H 0.96697 * 113.99793 * 59.07349 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5288 1.7626 2.4522 6 6 2.7149 3.2519 2.5891 7 1 3.1378 3.8204 1.7740 8 6 2.3464 3.8883 3.7553 9 7 1.8319 3.1959 4.7480 10 14 2.5779 5.7341 3.9252 11 1 1.7940 6.4302 2.8735 12 1 2.1063 6.1709 5.2640 13 1 4.0166 6.0686 3.7733 14 6 4.2775 0.9600 0.9572 15 8 5.0240 0.8853 1.9141 16 6 4.7769 0.6436 -0.3944 17 6 4.6514 1.5655 -1.4369 18 6 5.1306 1.2246 -2.6951 19 6 5.7205 -0.0068 -2.8846 20 7 5.8281 -0.8630 -1.8758 21 6 5.3884 -0.5902 -0.6630 22 8 5.5271 -1.5044 0.3266 23 6 6.2555 -0.4451 -4.2246 24 6 6.4645 0.7592 -5.1398 25 6 5.1713 1.5823 -5.1613 26 6 4.9998 2.2440 -3.7953 27 1 5.7624 3.0127 -3.6699 28 8 3.7063 2.8473 -3.7229 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 1.4727 1.5168 2.5636 35 1 3.1041 1.2520 3.2243 36 1 1.5723 3.6437 5.5684 37 1 4.1856 2.5253 -1.2681 38 1 4.7807 -2.1139 0.4064 39 1 7.2069 -0.9573 -4.0816 40 1 5.5456 -1.1300 -4.6884 41 1 7.2821 1.3713 -4.7589 42 1 6.7016 0.4171 -6.1472 43 1 5.2360 2.3478 -5.9346 44 1 4.3228 0.9282 -5.3622 45 1 3.5246 3.2884 -2.8818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823090617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:14 Heat of formation + Delta-G solvation = -66.064335 kcal Electronic energy + Delta-G solvation = -29406.460891 eV Core-core repulsion = 25389.879782 eV Total energy + Delta-G solvation = -4016.581109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24125 -39.15042 -38.20614 -36.64274 -35.74563 -35.35458 -33.28013 -32.83964 -32.03435 -30.16115 -29.37938 -27.57806 -25.76538 -24.59078 -23.90081 -22.78394 -22.45719 -20.62067 -19.95661 -19.19380 -18.39835 -17.65110 -17.25004 -16.75463 -16.47487 -16.13239 -15.49214 -15.40171 -14.93790 -14.67521 -14.39776 -14.18522 -14.09182 -13.58548 -13.42137 -13.37293 -13.08678 -12.89040 -12.70286 -12.20490 -11.98817 -11.81556 -11.73132 -11.46510 -11.34731 -11.33700 -11.14770 -11.10287 -10.96414 -10.65383 -10.58400 -10.26171 -9.86116 -9.71794 -9.68523 -9.20299 -9.03752 -8.72317 -8.48323 -7.79820 -6.09909 -4.15738 0.68549 0.94717 2.39634 3.08038 3.27402 3.31474 3.32867 3.35042 3.59535 3.81586 3.94906 4.23884 4.32346 4.40213 4.48813 4.54231 4.69274 4.85641 4.93925 5.07253 5.12086 5.17843 5.24284 5.30478 5.33051 5.36888 5.49835 5.52002 5.56981 5.57888 5.70373 5.86097 5.93664 5.94975 5.97289 6.10817 6.27140 6.73734 6.84661 6.99885 7.32110 7.37156 7.42805 7.47730 7.76283 7.85319 8.15219 8.25030 8.78374 8.93946 9.49438 10.98145 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.003850 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.032606 B = 7270.952518 C = 7766.134868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 C 0.128 3.872 4 N -0.585 5.585 5 C 0.248 3.752 6 C -0.532 4.532 7 H 0.056 0.944 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.554 3.446 15 O -0.514 6.514 16 C -0.175 4.175 17 C -0.031 4.031 18 C -0.181 4.181 19 C 0.177 3.823 20 N -0.509 5.509 21 C 0.359 3.641 22 O -0.465 6.465 23 C -0.071 4.071 24 C -0.117 4.117 25 C -0.113 4.113 26 C 0.155 3.845 27 H 0.071 0.929 28 O -0.559 6.559 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.265 0.735 37 H 0.144 0.856 38 H 0.400 0.600 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 -5.886 -21.182 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.186 4.186 3 C 0.004 3.996 4 N -0.316 5.316 5 C 0.129 3.871 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.338 3.662 15 O -0.390 6.390 16 C -0.182 4.182 17 C -0.057 4.057 18 C -0.183 4.183 19 C 0.040 3.960 20 N -0.228 5.228 21 C 0.178 3.822 22 O -0.271 6.271 23 C -0.109 4.109 24 C -0.155 4.155 25 C -0.150 4.150 26 C 0.096 3.904 27 H 0.089 0.911 28 O -0.365 6.365 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.258 0.742 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.053 -6.677 -20.997 22.403 hybrid contribution -0.740 1.670 1.146 2.156 sum 3.313 -5.006 -19.852 20.740 Atomic orbital electron populations 1.23819 0.95740 1.01866 1.00187 1.23299 0.96361 0.98702 1.00244 1.20790 0.93162 0.95687 0.89931 1.48192 1.07556 1.63520 1.12345 1.19331 0.95368 0.94987 0.77418 1.21357 1.42357 0.92557 1.00774 0.92532 1.24920 0.94941 0.98592 0.95441 1.69920 1.42005 1.35977 1.05119 0.86565 0.78646 0.84972 0.77287 1.20191 1.21100 1.20170 1.17735 0.82959 0.78663 0.86841 1.90815 1.55783 1.51569 1.40838 1.21290 1.03294 0.97002 0.96621 1.21517 0.94674 0.98991 0.90515 1.21065 1.03390 0.97540 0.96325 1.20855 0.92946 0.88393 0.93763 1.67027 1.19870 1.36179 0.99698 1.18907 0.90293 0.87707 0.85298 1.84799 1.47231 1.46714 1.48370 1.20463 1.02337 0.98480 0.89621 1.21552 0.97560 0.96253 1.00118 1.21531 0.98571 0.99864 0.95081 1.20500 0.85683 0.91556 0.92689 0.91118 1.86554 1.33882 1.74506 1.41607 0.88144 0.88712 0.88263 0.89296 0.90477 0.94664 0.93612 0.92553 0.83888 0.74168 0.89228 0.89286 0.91064 0.89920 0.90322 0.90368 0.77105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 14.32 29.01 0.42 -1.90 16 2 C -0.17 -2.40 9.84 -36.03 -0.35 -2.75 16 3 C 0.13 2.04 5.69 -5.19 -0.03 2.01 16 4 N -0.59 -12.04 2.44 -177.67 -0.43 -12.47 16 5 C 0.25 6.32 5.22 -5.19 -0.03 6.30 16 6 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 10 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.55 11.72 6.82 -12.48 -0.09 11.63 16 15 O -0.51 -13.37 16.38 4.04 0.07 -13.31 16 16 C -0.18 -2.97 4.91 -104.78 -0.51 -3.48 16 17 C -0.03 -0.43 6.77 -38.78 -0.26 -0.69 16 18 C -0.18 -2.13 5.56 -104.60 -0.58 -2.71 16 19 C 0.18 2.16 6.63 -82.29 -0.55 1.61 16 20 N -0.51 -7.50 10.18 -9.20 -0.09 -7.60 16 21 C 0.36 5.87 7.77 -16.77 -0.13 5.74 16 22 O -0.46 -7.52 12.83 -19.23 -0.25 -7.76 16 23 C -0.07 -0.60 5.91 -27.99 -0.17 -0.77 16 24 C -0.12 -0.75 5.97 -26.73 -0.16 -0.91 16 25 C -0.11 -0.85 5.62 -26.70 -0.15 -1.00 16 26 C 0.16 1.46 3.50 -28.08 -0.10 1.36 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 O -0.56 -5.64 13.16 -35.23 -0.46 -6.11 16 29 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 30 H 0.09 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.10 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.09 1.43 7.76 -51.93 -0.40 1.03 16 33 H 0.08 1.06 4.43 -51.93 -0.23 0.83 16 34 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.05 1.34 7.35 -51.93 -0.38 0.95 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.14 1.74 6.21 -52.48 -0.33 1.41 16 38 H 0.40 4.46 9.06 45.56 0.41 4.87 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 45 H 0.38 3.00 7.34 45.56 0.33 3.34 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -35.68 375.73 -7.67 -43.35 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.77 Total: 6.04 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.11 Total: 1.21 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.21 Total: -45.41 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.64 Total: -27.18 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.68 -7.67 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.714 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds