Wall clock time and date at job start Tue Mar 31 2020 17:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00000 * 2 1 4 4 N 1.46505 * 109.47093 * 125.00466 * 3 2 1 5 5 C 1.46504 * 119.99870 * 274.96788 * 4 3 2 6 6 C 1.50709 * 109.46811 * 269.99874 * 5 4 3 7 7 H 1.07997 * 120.00111 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99624 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00206 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99383 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47314 * 59.99986 * 10 8 6 12 12 H 1.48503 * 109.46946 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47241 * 299.99364 * 10 8 6 14 14 C 1.34770 * 120.00183 * 94.96372 * 4 3 2 15 15 O 1.21589 * 120.00123 * 185.54095 * 14 4 3 16 16 C 1.47526 * 119.99940 * 5.53968 * 14 4 3 17 17 C 1.39736 * 120.77239 * 54.98737 * 16 14 4 18 18 C 1.38884 * 118.87867 * 180.25406 * 17 16 14 19 19 C 1.37848 * 119.43631 * 359.75052 * 18 17 16 20 20 N 1.32753 * 120.42286 * 0.16684 * 19 18 17 21 21 C 1.31859 * 122.58007 * 359.93138 * 20 19 18 22 22 O 1.35431 * 119.88713 * 180.02562 * 21 20 19 23 23 C 1.50794 * 122.25261 * 179.66832 * 19 18 17 24 24 C 1.52694 * 110.60505 * 18.35086 * 23 19 18 25 25 C 1.53309 * 108.44522 * 308.61820 * 24 23 19 26 26 C 1.50551 * 117.76573 * 180.83231 * 18 17 16 27 27 H 1.09003 * 109.42894 * 76.77602 * 26 18 17 28 28 O 1.42909 * 109.11468 * 317.28752 * 26 18 17 29 29 H 1.08004 * 120.00131 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00022 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99738 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47364 * 5.00365 * 3 2 1 33 33 H 1.08996 * 109.47291 * 245.00296 * 3 2 1 34 34 H 1.08999 * 109.47483 * 29.99273 * 5 4 3 35 35 H 1.08993 * 109.46978 * 150.00031 * 5 4 3 36 36 H 0.97004 * 119.99767 * 180.02562 * 9 8 6 37 37 H 1.08009 * 120.56108 * 359.97438 * 17 16 14 38 38 H 0.96696 * 114.00508 * 269.98234 * 22 21 20 39 39 H 1.08998 * 109.25121 * 138.64759 * 23 19 18 40 40 H 1.09005 * 109.25087 * 258.06341 * 23 19 18 41 41 H 1.09005 * 109.63794 * 68.30223 * 24 23 19 42 42 H 1.09000 * 109.64582 * 188.71403 * 24 23 19 43 43 H 1.08999 * 109.69165 * 189.61818 * 25 24 23 44 44 H 1.09000 * 109.69395 * 310.16122 * 25 24 23 45 45 H 0.96697 * 113.99793 * 59.07349 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5288 1.7626 2.4522 6 6 2.7149 3.2519 2.5891 7 1 3.1378 3.8204 1.7740 8 6 2.3464 3.8883 3.7553 9 7 1.8319 3.1959 4.7480 10 14 2.5779 5.7341 3.9252 11 1 1.7940 6.4302 2.8735 12 1 2.1063 6.1709 5.2640 13 1 4.0166 6.0686 3.7733 14 6 4.2775 0.9600 0.9572 15 8 5.0240 0.8853 1.9141 16 6 4.7769 0.6436 -0.3944 17 6 4.6514 1.5655 -1.4369 18 6 5.1306 1.2246 -2.6951 19 6 5.7205 -0.0068 -2.8846 20 7 5.8281 -0.8630 -1.8758 21 6 5.3884 -0.5902 -0.6630 22 8 5.5271 -1.5044 0.3266 23 6 6.2555 -0.4451 -4.2246 24 6 6.4645 0.7592 -5.1398 25 6 5.1713 1.5823 -5.1613 26 6 4.9998 2.2440 -3.7953 27 1 5.7624 3.0127 -3.6699 28 8 3.7063 2.8473 -3.7229 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 1.4727 1.5168 2.5636 35 1 3.1041 1.2520 3.2243 36 1 1.5723 3.6437 5.5684 37 1 4.1856 2.5253 -1.2681 38 1 4.7807 -2.1139 0.4064 39 1 7.2069 -0.9573 -4.0816 40 1 5.5456 -1.1300 -4.6884 41 1 7.2821 1.3713 -4.7589 42 1 6.7016 0.4171 -6.1472 43 1 5.2360 2.3478 -5.9346 44 1 4.3228 0.9282 -5.3622 45 1 3.5246 3.2884 -2.8818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823090617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:13 Heat of formation + Delta-G solvation = -94.912998 kcal Electronic energy + Delta-G solvation = -29407.711863 eV Core-core repulsion = 25389.879782 eV Total energy + Delta-G solvation = -4017.832081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35569 -40.56242 -39.33973 -37.62348 -37.30943 -36.17965 -35.14465 -33.98217 -33.60047 -31.26087 -30.22362 -29.34857 -27.13712 -25.92602 -25.09309 -24.19617 -23.39507 -21.68247 -21.05346 -20.51819 -19.54673 -18.67582 -18.53941 -18.24176 -18.04918 -17.57193 -16.85647 -16.46172 -16.20969 -15.97405 -15.80043 -15.46221 -14.98105 -14.61835 -14.55543 -14.36789 -14.20417 -14.18101 -14.13329 -13.71093 -13.38459 -13.03175 -13.00674 -12.91947 -12.71252 -12.60004 -12.32109 -12.24435 -12.11380 -11.94123 -11.74878 -11.72330 -11.55219 -10.99909 -10.85718 -10.65163 -10.47554 -10.30835 -9.83093 -9.55410 -8.23731 -6.39000 -0.44618 -0.14541 1.23335 1.37179 1.41474 1.48352 1.63474 2.13111 2.28995 2.41718 2.46697 3.06770 3.27378 3.29875 3.39724 3.51254 3.56826 3.82079 4.00747 4.01618 4.14207 4.17206 4.30187 4.30554 4.40683 4.46063 4.57212 4.61022 4.74354 4.82414 4.95593 4.96996 4.98637 5.09190 5.13923 5.19212 5.22137 5.37973 5.42833 5.44665 5.63528 5.70928 5.87031 6.01991 6.38927 6.55909 6.66393 6.69063 6.70428 7.17393 7.34687 8.83838 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.003850 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.032606 B = 7270.952518 C = 7766.134868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.128 3.872 4 N -0.584 5.584 5 C 0.265 3.735 6 C -0.546 4.546 7 H 0.059 0.941 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.256 1.256 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.555 3.445 15 O -0.578 6.578 16 C -0.199 4.199 17 C -0.029 4.029 18 C -0.171 4.171 19 C 0.180 3.820 20 N -0.519 5.519 21 C 0.349 3.651 22 O -0.485 6.485 23 C -0.072 4.072 24 C -0.109 4.109 25 C -0.112 4.112 26 C 0.154 3.846 27 H 0.086 0.914 28 O -0.568 6.568 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.026 0.974 35 H -0.003 1.003 36 H 0.267 0.733 37 H 0.156 0.844 38 H 0.415 0.585 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -4.772 -24.884 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.007 3.993 4 N -0.313 5.313 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.180 1.180 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.342 3.658 15 O -0.458 6.458 16 C -0.205 4.205 17 C -0.054 4.054 18 C -0.173 4.173 19 C 0.043 3.957 20 N -0.239 5.239 21 C 0.168 3.832 22 O -0.295 6.295 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.149 4.149 26 C 0.094 3.906 27 H 0.103 0.897 28 O -0.376 6.376 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.044 0.956 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.174 0.826 38 H 0.276 0.724 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.092 0.908 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.873 -5.574 -24.754 25.667 hybrid contribution -0.730 1.252 2.209 2.642 sum 3.143 -4.322 -22.545 23.170 Atomic orbital electron populations 1.24067 0.95238 1.03157 0.97417 1.23226 0.96944 0.97995 1.02718 1.20996 0.92644 0.96713 0.88993 1.48103 1.08439 1.62882 1.11893 1.18769 0.93792 0.94021 0.79014 1.21664 1.42254 0.93376 1.01145 0.92229 1.25855 0.94421 1.03675 0.94979 1.70053 1.42891 1.38059 1.05684 0.85470 0.78497 0.78976 0.77911 1.18016 1.20594 1.20358 1.18312 0.82338 0.77144 0.88022 1.90763 1.57324 1.54326 1.43401 1.20883 1.06050 0.98691 0.94921 1.21693 0.94490 0.98776 0.90466 1.21404 1.01836 0.97920 0.96170 1.21685 0.91374 0.88017 0.94616 1.67158 1.20244 1.37011 0.99452 1.18991 0.90663 0.87583 0.85922 1.84739 1.48460 1.47274 1.49003 1.20663 1.02659 0.99873 0.87755 1.21576 0.97021 0.95070 1.01040 1.21584 0.98948 1.00271 0.94083 1.20731 0.85882 0.91180 0.92779 0.89686 1.86551 1.34240 1.74546 1.42302 0.87744 0.86494 0.87911 0.89476 0.88146 0.95612 0.98480 0.92375 0.82630 0.72369 0.88740 0.87779 0.90781 0.87098 0.88680 0.90767 0.76229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 14.32 67.78 0.97 -2.99 16 2 C -0.19 -5.39 9.84 25.64 0.25 -5.14 16 3 C 0.13 4.10 5.69 85.63 0.49 4.59 16 4 N -0.58 -25.09 2.44 -834.28 -2.04 -27.13 16 5 C 0.26 14.29 5.22 85.64 0.45 14.74 16 6 C -0.55 -30.83 9.39 25.60 0.24 -30.59 16 7 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 8 C 0.01 0.57 5.46 84.66 0.46 1.03 16 9 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 10 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.55 24.74 6.82 86.69 0.59 25.33 16 15 O -0.58 -32.22 16.38 -2.80 -0.05 -32.27 16 16 C -0.20 -6.87 4.91 -19.97 -0.10 -6.97 16 17 C -0.03 -0.76 6.77 22.79 0.15 -0.60 16 18 C -0.17 -3.67 5.56 -19.85 -0.11 -3.78 16 19 C 0.18 4.01 6.63 42.36 0.28 4.29 16 20 N -0.52 -14.93 10.18 -296.22 -3.02 -17.95 16 21 C 0.35 11.65 7.77 85.19 0.66 12.31 16 22 O -0.49 -16.54 12.83 -86.07 -1.10 -17.65 16 23 C -0.07 -0.98 5.91 29.78 0.18 -0.80 16 24 C -0.11 -0.93 5.97 30.60 0.18 -0.75 16 25 C -0.11 -1.23 5.62 30.62 0.17 -1.06 16 26 C 0.15 2.40 3.50 29.72 0.10 2.50 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 O -0.57 -9.83 13.16 -148.98 -1.96 -11.79 16 29 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 30 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.10 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.09 2.79 7.76 -2.38 -0.02 2.77 16 33 H 0.10 2.70 4.43 -2.39 -0.01 2.68 16 34 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 35 H 0.00 -0.18 7.35 -2.39 -0.02 -0.20 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.16 3.61 6.21 -2.91 -0.02 3.59 16 38 H 0.42 10.01 9.06 -74.06 -0.67 9.34 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.07 0.64 8.10 -2.38 -0.02 0.62 16 42 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 45 H 0.39 5.17 7.34 -74.06 -0.54 4.63 16 Total: -1.00 -81.26 375.73 -1.05 -82.31 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.18 Total: 21.87 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 4.97 Total: 12.11 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -4.77 Total: -100.60 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -3.11 Total: -61.71 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -81.26 -1.05 -82.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.600 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds