Wall clock time and date at job start Tue Mar 31 2020 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00066 * 2 1 3 5 5 O 1.45196 * 109.47220 * 120.00245 * 2 1 3 6 6 C 1.34638 * 117.00104 * 59.99339 * 5 2 1 7 7 O 1.21511 * 120.00091 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00145 * 179.97438 * 6 5 2 9 9 C 1.46632 * 126.59303 * 0.02946 * 8 6 5 10 10 C 1.50813 * 107.70047 * 179.97438 * 9 8 6 11 11 C 1.38621 * 131.11271 * 180.02562 * 10 9 8 12 12 C 1.38267 * 120.42971 * 179.97438 * 11 10 9 13 13 C 1.37955 * 120.12984 * 0.02562 * 12 11 10 14 14 C 1.39569 * 119.78909 * 359.97438 * 13 12 11 15 15 C 1.47727 * 120.10441 * 179.97438 * 14 13 12 16 16 O 1.21594 * 119.99592 * 179.97438 * 15 14 13 17 17 N 1.34773 * 120.00103 * 359.97438 * 15 14 13 18 18 C 1.36876 * 119.99993 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99827 * 359.97438 * 18 17 15 20 20 C 1.39045 * 119.99708 * 180.02562 * 18 17 15 21 21 N 1.31361 * 120.00660 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99667 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47112 * 59.99580 * 22 20 18 24 24 H 1.48494 * 109.46918 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46870 * 299.99435 * 22 20 18 26 26 C 1.37763 * 108.86579 * 0.02562 * 10 9 8 27 27 C 1.46650 * 126.59104 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.46689 * 300.00117 * 1 2 3 29 29 H 1.08997 * 109.46837 * 59.99785 * 1 2 3 30 30 H 1.08993 * 109.47088 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46943 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46903 * 300.00406 * 3 2 1 33 33 H 1.09000 * 109.47003 * 60.00150 * 3 2 1 34 34 H 1.08993 * 109.46796 * 300.00186 * 4 2 1 35 35 H 1.08997 * 109.46794 * 60.00118 * 4 2 1 36 36 H 1.08995 * 109.46888 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.81264 * 60.45002 * 9 8 6 38 38 H 1.08997 * 109.87490 * 299.57775 * 9 8 6 39 39 H 1.08005 * 119.78707 * 359.95352 * 11 10 9 40 40 H 1.08000 * 119.93627 * 179.97438 * 12 11 10 41 41 H 1.08005 * 120.10559 * 179.70039 * 13 12 11 42 42 H 0.97003 * 119.99902 * 0.02562 * 17 15 14 43 43 H 0.96994 * 120.00073 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.81550 * 299.53916 * 27 8 6 45 45 H 1.08992 * 109.81663 * 60.38516 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0681 -2.6658 2.4166 9 6 2.9124 -2.1648 3.5058 10 6 3.1137 -3.2931 4.4859 11 6 3.8218 -3.3510 5.6763 12 6 3.8589 -4.5205 6.4129 13 6 3.1899 -5.6414 5.9667 14 6 2.4747 -5.5913 4.7692 15 6 1.7563 -6.7877 4.2845 16 8 1.1334 -6.7416 3.2412 17 7 1.7912 -7.9301 4.9988 18 6 1.1259 -9.0387 4.5494 19 1 0.5727 -8.9978 3.6228 20 6 1.1616 -10.2171 5.2866 21 7 1.8340 -10.2667 6.4140 22 14 0.2542 -11.7304 4.6730 23 1 0.7877 -12.1223 3.3437 24 1 0.4483 -12.8468 5.6326 25 1 -1.1942 -11.4249 4.5546 26 6 2.4413 -4.4053 4.0291 27 6 1.7630 -4.0664 2.7261 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 2.4186 -1.3289 4.0015 38 1 3.8754 -1.8426 3.1099 39 1 4.3482 -2.4769 6.0305 40 1 4.4133 -4.5568 7.3390 41 1 3.2231 -6.5562 6.5399 42 1 2.2878 -7.9666 5.8312 43 1 1.8591 -11.0889 6.9279 44 1 0.6854 -4.1965 2.8259 45 1 2.1410 -4.7109 1.9326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824990646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:44 Heat of formation + Delta-G solvation = -78.663608 kcal Electronic energy + Delta-G solvation = -28317.835870 eV Core-core repulsion = 24300.708415 eV Total energy + Delta-G solvation = -4017.127455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00581 -40.03455 -38.09891 -37.11744 -35.80324 -34.21099 -34.06088 -31.73675 -31.09932 -30.76141 -27.83410 -27.58196 -27.52271 -25.69630 -25.12489 -22.59406 -21.83248 -21.00642 -19.53200 -19.34345 -18.16124 -17.81464 -16.70111 -16.62037 -16.31642 -15.59736 -15.39395 -15.11706 -14.76484 -14.36752 -14.34193 -14.25222 -13.72139 -13.68863 -13.55442 -12.98739 -12.74547 -12.73918 -12.67177 -12.37557 -12.27706 -12.06024 -11.99573 -11.95566 -11.68282 -11.51486 -11.42995 -11.18233 -11.15398 -11.09163 -10.52118 -10.48023 -10.32962 -10.08699 -9.66439 -9.13528 -8.55322 -8.52572 -8.21148 -8.11885 -6.61544 -3.93635 1.23100 1.46285 1.97800 2.83832 3.13351 3.18658 3.23229 3.53970 3.77849 4.04883 4.35634 4.36096 4.54179 4.58159 4.60849 4.72748 4.82181 5.15555 5.22630 5.26396 5.31283 5.35072 5.35092 5.40008 5.42292 5.49902 5.57519 5.61586 5.69811 5.77966 5.86940 5.91899 5.93521 6.05691 6.15621 6.19047 6.22253 6.24307 6.41277 6.50461 6.63786 6.75065 7.06315 7.38214 7.48115 7.90222 8.32092 8.44392 9.00589 9.35514 9.91143 10.55053 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.002746 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.027386 B =10192.704468 C =11640.018747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.676 3.324 7 O -0.558 6.558 8 N -0.604 5.604 9 C 0.156 3.844 10 C -0.122 4.122 11 C -0.095 4.095 12 C -0.117 4.117 13 C -0.098 4.098 14 C -0.067 4.067 15 C 0.459 3.541 16 O -0.592 6.592 17 N -0.540 5.540 18 C -0.293 4.293 19 H 0.109 0.891 20 C 0.024 3.976 21 N -0.889 5.889 22 Si 0.936 3.064 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.271 1.271 26 C -0.060 4.060 27 C 0.181 3.819 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.394 0.606 43 H 0.277 0.723 44 H 0.093 0.907 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 20.326 -3.797 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.277 6.277 6 C 0.431 3.569 7 O -0.447 6.447 8 N -0.344 5.344 9 C 0.033 3.967 10 C -0.122 4.122 11 C -0.114 4.114 12 C -0.135 4.135 13 C -0.118 4.118 14 C -0.072 4.072 15 C 0.247 3.753 16 O -0.478 6.478 17 N -0.173 5.173 18 C -0.423 4.423 19 H 0.127 0.873 20 C -0.179 4.179 21 N -0.528 5.528 22 Si 0.762 3.238 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.196 1.196 26 C -0.062 4.062 27 C 0.061 3.939 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.181 20.088 -4.757 21.062 hybrid contribution -0.043 -0.844 0.418 0.943 sum 4.138 19.244 -4.340 20.156 Atomic orbital electron populations 1.22528 0.93962 1.05292 1.02374 1.22077 0.94451 0.91431 0.82180 1.21847 1.02199 0.92531 1.03039 1.22526 1.01549 1.03715 0.96366 1.86289 1.71633 1.23405 1.46411 1.17105 0.78846 0.80271 0.80660 1.90935 1.41039 1.70361 1.42343 1.46578 1.53239 1.13354 1.21278 1.20197 0.95280 0.94922 0.86334 1.20131 1.00479 0.95151 0.96458 1.20401 0.99303 0.98362 0.93368 1.20946 1.00021 0.92548 0.99952 1.21401 0.96164 0.99083 0.95115 1.19818 0.98887 0.93779 0.94676 1.17703 0.87207 0.83344 0.87002 1.90619 1.48030 1.84240 1.24959 1.41895 1.44137 1.09291 1.22025 1.19819 1.26988 0.87759 1.07736 0.87339 1.25394 0.97399 0.99671 0.95474 1.69572 1.40162 1.29343 1.13719 0.85829 0.79828 0.79591 0.78576 1.19589 1.20756 1.19585 1.19976 0.97614 0.93070 0.95548 1.20095 1.01138 0.78122 0.94573 0.92174 0.91176 0.89213 0.91501 0.90175 0.91504 0.89208 0.91177 0.92177 0.90101 0.90085 0.85913 0.85313 0.84831 0.77138 0.91304 0.88858 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 2 C 0.14 1.45 1.13 -90.61 -0.10 1.35 16 3 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 4 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 5 O -0.36 -4.82 9.53 -40.32 -0.38 -5.21 16 6 C 0.68 10.79 7.95 54.06 0.43 11.22 16 7 O -0.56 -10.17 12.26 -19.28 -0.24 -10.40 16 8 N -0.60 -9.51 3.34 -181.92 -0.61 -10.12 16 9 C 0.16 1.98 6.94 -5.07 -0.04 1.95 16 10 C -0.12 -1.74 6.21 -104.60 -0.65 -2.39 16 11 C -0.10 -1.16 10.04 -39.43 -0.40 -1.56 16 12 C -0.12 -1.51 10.03 -39.67 -0.40 -1.91 16 13 C -0.10 -1.60 9.54 -39.19 -0.37 -1.97 16 14 C -0.07 -1.32 5.88 -104.93 -0.62 -1.93 16 15 C 0.46 11.10 7.72 -12.38 -0.10 11.01 16 16 O -0.59 -16.04 14.77 5.28 0.08 -15.96 16 17 N -0.54 -13.54 5.23 -11.87 -0.06 -13.60 16 18 C -0.29 -7.97 9.68 -15.00 -0.15 -8.12 16 19 H 0.11 3.08 7.15 -52.49 -0.38 2.70 16 20 C 0.02 0.63 5.50 -17.45 -0.10 0.53 16 21 N -0.89 -23.12 13.05 55.50 0.72 -22.40 16 22 Si 0.94 20.36 29.55 -169.99 -5.02 15.33 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 C -0.06 -1.07 6.09 -104.17 -0.63 -1.70 16 27 C 0.18 3.31 5.41 -5.08 -0.03 3.29 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 2.12 6.40 -52.48 -0.34 1.79 16 42 H 0.39 9.28 5.92 -40.82 -0.24 9.04 16 43 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 44 H 0.09 1.86 8.04 -51.93 -0.42 1.44 16 45 H 0.09 1.86 8.04 -51.93 -0.42 1.45 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -31.25 371.80 -8.28 -39.53 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.18 Total: 11.48 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.19 Total: 5.74 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.05 Total: -46.12 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.54 Total: -31.57 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.25 -8.28 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824990646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.135 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds