Wall clock time and date at job start Tue Mar 31 2020 17:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00066 * 2 1 3 5 5 O 1.45196 * 109.47220 * 120.00245 * 2 1 3 6 6 C 1.34638 * 117.00104 * 59.99339 * 5 2 1 7 7 O 1.21511 * 120.00091 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00145 * 179.97438 * 6 5 2 9 9 C 1.46632 * 126.59303 * 0.02946 * 8 6 5 10 10 C 1.50813 * 107.70047 * 179.97438 * 9 8 6 11 11 C 1.38621 * 131.11271 * 180.02562 * 10 9 8 12 12 C 1.38267 * 120.42971 * 179.97438 * 11 10 9 13 13 C 1.37955 * 120.12984 * 0.02562 * 12 11 10 14 14 C 1.39569 * 119.78909 * 359.97438 * 13 12 11 15 15 C 1.47727 * 120.10441 * 179.97438 * 14 13 12 16 16 O 1.21594 * 119.99592 * 179.97438 * 15 14 13 17 17 N 1.34773 * 120.00103 * 359.97438 * 15 14 13 18 18 C 1.36876 * 119.99993 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99827 * 359.97438 * 18 17 15 20 20 C 1.39045 * 119.99708 * 180.02562 * 18 17 15 21 21 N 1.31361 * 120.00660 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99667 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47112 * 59.99580 * 22 20 18 24 24 H 1.48494 * 109.46918 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46870 * 299.99435 * 22 20 18 26 26 C 1.37763 * 108.86579 * 0.02562 * 10 9 8 27 27 C 1.46650 * 126.59104 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.46689 * 300.00117 * 1 2 3 29 29 H 1.08997 * 109.46837 * 59.99785 * 1 2 3 30 30 H 1.08993 * 109.47088 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46943 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46903 * 300.00406 * 3 2 1 33 33 H 1.09000 * 109.47003 * 60.00150 * 3 2 1 34 34 H 1.08993 * 109.46796 * 300.00186 * 4 2 1 35 35 H 1.08997 * 109.46794 * 60.00118 * 4 2 1 36 36 H 1.08995 * 109.46888 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.81264 * 60.45002 * 9 8 6 38 38 H 1.08997 * 109.87490 * 299.57775 * 9 8 6 39 39 H 1.08005 * 119.78707 * 359.95352 * 11 10 9 40 40 H 1.08000 * 119.93627 * 179.97438 * 12 11 10 41 41 H 1.08005 * 120.10559 * 179.70039 * 13 12 11 42 42 H 0.97003 * 119.99902 * 0.02562 * 17 15 14 43 43 H 0.96994 * 120.00073 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.81550 * 299.53916 * 27 8 6 45 45 H 1.08992 * 109.81663 * 60.38516 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0681 -2.6658 2.4166 9 6 2.9124 -2.1648 3.5058 10 6 3.1137 -3.2931 4.4859 11 6 3.8218 -3.3510 5.6763 12 6 3.8589 -4.5205 6.4129 13 6 3.1899 -5.6414 5.9667 14 6 2.4747 -5.5913 4.7692 15 6 1.7563 -6.7877 4.2845 16 8 1.1334 -6.7416 3.2412 17 7 1.7912 -7.9301 4.9988 18 6 1.1259 -9.0387 4.5494 19 1 0.5727 -8.9978 3.6228 20 6 1.1616 -10.2171 5.2866 21 7 1.8340 -10.2667 6.4140 22 14 0.2542 -11.7304 4.6730 23 1 0.7877 -12.1223 3.3437 24 1 0.4483 -12.8468 5.6326 25 1 -1.1942 -11.4249 4.5546 26 6 2.4413 -4.4053 4.0291 27 6 1.7630 -4.0664 2.7261 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 2.4186 -1.3289 4.0015 38 1 3.8754 -1.8426 3.1099 39 1 4.3482 -2.4769 6.0305 40 1 4.4133 -4.5568 7.3390 41 1 3.2231 -6.5562 6.5399 42 1 2.2878 -7.9666 5.8312 43 1 1.8591 -11.0889 6.9279 44 1 0.6854 -4.1965 2.8259 45 1 2.1410 -4.7109 1.9326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824990646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:43 Heat of formation + Delta-G solvation = -98.702741 kcal Electronic energy + Delta-G solvation = -28318.704832 eV Core-core repulsion = 24300.708415 eV Total energy + Delta-G solvation = -4017.996417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21377 -41.30262 -39.80331 -38.34060 -37.08233 -36.13884 -35.05829 -33.54963 -32.50237 -32.07276 -29.15551 -28.37700 -28.27173 -27.13784 -26.77059 -24.05009 -22.94385 -22.26970 -21.03287 -20.60263 -20.06172 -19.00076 -18.02891 -17.82918 -17.69684 -17.05509 -16.59587 -16.37234 -16.23789 -15.89580 -15.57195 -15.48434 -15.16897 -15.10885 -14.80552 -14.44252 -14.04787 -13.91354 -13.65689 -13.50319 -13.35182 -13.34132 -13.06152 -12.93456 -12.90762 -12.87243 -12.60136 -12.49313 -12.40680 -12.34472 -12.24231 -12.12894 -11.61259 -11.43372 -11.23258 -10.47660 -10.38389 -10.15245 -9.81589 -9.43969 -8.58044 -6.02303 -0.07261 0.24844 0.81219 1.38995 1.39395 1.50099 1.59475 2.04839 2.24234 2.74324 2.75534 3.04165 3.19830 3.25151 3.42615 3.74757 3.79009 3.94192 4.01092 4.13959 4.23594 4.33681 4.39129 4.43132 4.50947 4.55628 4.60896 4.61224 4.71119 4.76402 4.83016 4.84566 4.87090 4.89505 4.96101 5.14666 5.28178 5.31531 5.32738 5.34090 5.38442 5.44666 5.45448 5.86622 5.94703 6.27435 6.48058 7.00395 7.10754 7.40921 7.98340 8.58932 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.002746 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.027386 B =10192.704468 C =11640.018747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 C -0.131 4.131 4 C -0.182 4.182 5 O -0.354 6.354 6 C 0.674 3.326 7 O -0.591 6.591 8 N -0.607 5.607 9 C 0.154 3.846 10 C -0.112 4.112 11 C -0.065 4.065 12 C -0.102 4.102 13 C -0.100 4.100 14 C -0.103 4.103 15 C 0.457 3.543 16 O -0.633 6.633 17 N -0.550 5.550 18 C -0.338 4.338 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.908 5.908 22 Si 0.996 3.004 23 H -0.271 1.271 24 H -0.264 1.264 25 H -0.271 1.271 26 C -0.083 4.083 27 C 0.191 3.809 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.178 0.822 40 H 0.174 0.826 41 H 0.131 0.869 42 H 0.399 0.601 43 H 0.284 0.716 44 H 0.060 0.940 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 23.860 -2.122 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.086 3.914 3 C -0.188 4.188 4 C -0.239 4.239 5 O -0.268 6.268 6 C 0.430 3.570 7 O -0.481 6.481 8 N -0.347 5.347 9 C 0.033 3.967 10 C -0.113 4.113 11 C -0.083 4.083 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.107 4.107 15 C 0.247 3.753 16 O -0.522 6.522 17 N -0.185 5.185 18 C -0.467 4.467 19 H 0.099 0.901 20 C -0.208 4.208 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.197 1.197 24 H -0.188 1.188 25 H -0.197 1.197 26 C -0.086 4.086 27 C 0.069 3.931 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.196 0.804 40 H 0.192 0.808 41 H 0.149 0.851 42 H 0.235 0.765 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.492 23.664 -3.048 24.726 hybrid contribution -0.682 -1.696 -0.134 1.833 sum 5.810 21.968 -3.181 22.945 Atomic orbital electron populations 1.22496 0.94197 1.03309 1.03914 1.22550 0.94580 0.93057 0.81204 1.21871 1.02630 0.89683 1.04602 1.22494 1.01834 1.01897 0.97692 1.86310 1.71348 1.21502 1.47679 1.17261 0.78431 0.81076 0.80258 1.90931 1.42368 1.71285 1.43533 1.46570 1.53707 1.12237 1.22232 1.20492 0.96283 0.94712 0.85193 1.20485 0.99494 0.93890 0.97396 1.21026 0.96566 0.99648 0.91089 1.21449 0.98329 0.91034 1.01104 1.21507 0.96038 1.00704 0.93699 1.19537 1.01527 0.92354 0.97234 1.18611 0.86150 0.84468 0.86069 1.90572 1.49600 1.85286 1.26771 1.41852 1.44840 1.09283 1.22497 1.19720 1.29295 0.89666 1.08024 0.90111 1.26128 0.97699 1.01565 0.95432 1.69614 1.40648 1.30278 1.14171 0.84948 0.78382 0.76516 0.78272 1.19664 1.18811 1.19655 1.19942 0.99147 0.94085 0.95391 1.19673 0.99205 0.79625 0.94584 0.91618 0.88650 0.92874 0.90816 0.87725 0.90819 0.92870 0.88651 0.91622 0.87302 0.87280 0.80429 0.80836 0.85149 0.76521 0.90675 0.92199 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.37 71.99 0.60 -3.16 16 2 C 0.12 2.44 1.13 -10.79 -0.01 2.43 16 3 C -0.13 -1.50 8.85 71.98 0.64 -0.86 16 4 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 5 O -0.35 -8.98 9.53 -55.47 -0.53 -9.51 16 6 C 0.67 22.04 7.95 129.79 1.03 23.07 16 7 O -0.59 -23.13 12.26 19.81 0.24 -22.89 16 8 N -0.61 -19.37 3.34 -959.87 -3.20 -22.57 16 9 C 0.15 3.46 6.94 85.64 0.59 4.05 16 10 C -0.11 -2.87 6.21 -19.85 -0.12 -2.99 16 11 C -0.06 -1.21 10.04 22.37 0.22 -0.98 16 12 C -0.10 -2.14 10.03 22.21 0.22 -1.92 16 13 C -0.10 -3.15 9.54 22.52 0.21 -2.94 16 14 C -0.10 -4.16 5.88 -20.06 -0.12 -4.28 16 15 C 0.46 23.89 7.72 86.75 0.67 24.56 16 16 O -0.63 -37.75 14.77 -4.01 -0.06 -37.81 16 17 N -0.55 -29.49 5.23 -309.73 -1.62 -31.11 16 18 C -0.34 -19.62 9.68 84.10 0.81 -18.80 16 19 H 0.08 5.01 7.15 -2.91 -0.02 4.99 16 20 C -0.01 -0.35 5.50 84.96 0.47 0.11 16 21 N -0.91 -48.21 13.05 21.68 0.28 -47.93 16 22 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 C -0.08 -3.04 6.09 -19.57 -0.12 -3.16 16 27 C 0.19 7.58 5.41 85.62 0.46 8.04 16 28 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.52 5.88 -2.39 -0.01 1.50 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.05 1.52 5.88 -2.39 -0.01 1.50 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.13 4.13 6.40 -2.91 -0.02 4.11 16 42 H 0.40 19.87 5.92 -92.71 -0.55 19.32 16 43 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.06 2.70 8.04 -2.39 -0.02 2.68 16 45 H 0.06 2.70 8.04 -2.39 -0.02 2.68 16 Total: -1.00 -77.30 371.80 3.79 -73.51 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.47 Total: 33.38 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.17 Total: 20.01 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.54 Total: -101.61 kcal Atomic # 8 Polarization: -69.86 SS G_CDS: -0.35 Total: -70.21 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -77.30 3.79 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824990646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.193 kcal (2) G-P(sol) polarization free energy of solvation -77.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds