Wall clock time and date at job start Tue Mar 31 2020 16:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99989 * 2 1 4 4 C 1.53000 * 109.47385 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47329 * 239.99963 * 3 2 1 6 6 C 1.53009 * 109.47017 * 119.99908 * 3 2 1 7 7 N 1.46497 * 109.47313 * 179.97438 * 6 3 2 8 8 C 1.34769 * 120.00179 * 180.02562 * 7 6 3 9 9 O 1.21363 * 119.99741 * 0.02562 * 8 7 6 10 10 C 1.49356 * 120.00317 * 179.97438 * 8 7 6 11 11 O 1.21369 * 119.99579 * 0.02562 * 10 8 7 12 12 N 1.34768 * 119.99903 * 179.97438 * 10 8 7 13 13 C 1.39726 * 119.99772 * 174.78665 * 12 10 8 14 14 C 1.39026 * 120.04281 * 326.28675 * 13 12 10 15 15 C 1.38135 * 120.06033 * 180.02562 * 14 13 12 16 16 C 1.38182 * 120.14727 * 359.71300 * 15 14 13 17 17 C 1.38914 * 120.08070 * 0.56403 * 16 15 14 18 18 O 1.35759 * 120.03335 * 179.71476 * 17 16 15 19 19 C 1.34830 * 116.99906 * 173.81952 * 18 17 16 20 20 H 1.07996 * 120.00265 * 354.59877 * 19 18 17 21 21 C 1.38655 * 119.99479 * 174.60137 * 19 18 17 22 22 N 1.31550 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47399 * 60.00022 * 23 21 19 25 25 H 1.48505 * 109.46878 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47178 * 299.99666 * 23 21 19 27 27 C 1.38762 * 119.93859 * 359.43847 * 17 16 15 28 28 H 1.08001 * 120.00365 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00071 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00071 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47295 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46815 * 299.99584 * 4 3 2 33 33 H 1.09003 * 109.47510 * 59.99299 * 4 3 2 34 34 H 1.09001 * 109.47193 * 300.00256 * 5 3 2 35 35 H 1.09000 * 109.46687 * 60.00658 * 5 3 2 36 36 H 1.09001 * 109.46870 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46885 * 60.00124 * 6 3 2 38 38 H 1.08995 * 109.46933 * 300.00463 * 6 3 2 39 39 H 0.97004 * 119.99940 * 0.02562 * 7 6 3 40 40 H 0.96997 * 120.00904 * 354.78604 * 12 10 8 41 41 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 42 42 H 1.08007 * 119.92653 * 180.02562 * 15 14 13 43 43 H 1.08001 * 119.96095 * 180.29791 * 16 15 14 44 44 H 0.97004 * 119.99970 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.07407 * 180.25585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3861 1.2493 7 7 3.6761 2.6545 1.2491 8 6 4.5189 2.9460 2.2596 9 8 4.6709 2.1575 3.1695 10 6 5.2666 4.2389 2.2591 11 8 5.1149 5.0273 1.3488 12 7 6.1089 4.5306 3.2698 13 6 6.8898 5.6881 3.2166 14 6 7.3648 6.1516 1.9950 15 6 8.1373 7.2956 1.9419 16 6 8.4354 7.9860 3.1012 17 6 7.9687 7.5250 4.3257 18 8 8.2670 8.2009 5.4647 19 6 7.6791 7.7751 6.6009 20 1 6.9396 6.9889 6.5645 21 6 8.0241 8.3467 7.8161 22 7 8.9253 9.3040 7.8605 23 14 7.2102 7.7563 9.3904 24 1 7.4915 6.3107 9.5812 25 1 7.7494 8.5214 10.5434 26 1 5.7432 7.9672 9.2984 27 6 7.1925 6.3762 4.3830 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.6143 3.4120 0.0011 32 1 0.4424 2.4105 -0.8892 33 1 0.4428 2.4101 0.8908 34 1 3.6514 0.5577 -1.2492 35 1 2.3164 1.3286 -2.1392 36 1 3.4877 2.3304 -1.2494 37 1 3.6514 0.5576 1.2493 38 1 2.3165 1.3283 2.1392 39 1 3.5549 3.2846 0.5216 40 1 6.1732 3.9371 4.0343 41 1 7.1304 5.6163 1.0867 42 1 8.5048 7.6540 0.9917 43 1 9.0356 8.8827 3.0557 44 1 9.1669 9.7036 8.7108 45 1 6.8250 6.0182 5.3334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835721634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:21 Heat of formation + Delta-G solvation = -48.005101 kcal Electronic energy + Delta-G solvation = -27349.789781 eV Core-core repulsion = 23333.991779 eV Total energy + Delta-G solvation = -4015.798002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.00179 -39.62381 -38.70863 -38.08061 -36.55594 -34.83404 -34.00260 -32.26887 -31.12790 -29.58065 -28.77981 -27.83081 -27.50420 -25.42973 -24.67422 -22.44346 -21.90031 -21.29134 -20.26442 -19.22437 -18.41511 -18.02823 -17.33592 -16.84567 -16.15842 -15.88976 -15.74097 -15.41335 -15.20417 -14.95375 -14.56618 -14.38891 -14.15129 -13.97552 -13.79385 -13.60976 -13.41608 -13.04500 -12.67808 -12.44722 -12.35286 -12.19490 -11.92073 -11.75405 -11.62953 -11.59738 -11.38053 -11.12454 -11.07158 -11.01327 -10.79816 -10.47169 -9.99828 -9.86694 -9.61429 -9.52027 -9.46482 -8.83254 -7.83712 -7.24000 -6.47364 -4.07282 1.18132 1.77595 2.07940 2.27593 2.37628 3.12305 3.12713 3.16088 3.18663 3.56639 3.94862 4.19110 4.22812 4.35260 4.38960 4.53470 4.71296 4.86678 5.07620 5.11599 5.20312 5.22104 5.27056 5.28980 5.40724 5.50026 5.55823 5.61172 5.76695 5.80472 5.89648 5.91435 5.95936 6.13052 6.16573 6.17478 6.30881 6.52270 6.69405 6.85724 6.95217 7.07106 7.21971 7.35695 7.43843 7.65041 7.71544 7.95510 8.00608 8.97829 9.66268 10.70214 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002272 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.111328 B =12322.509972 C =13519.036857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 C -0.050 4.050 4 C -0.150 4.150 5 C -0.142 4.142 6 C 0.131 3.869 7 N -0.700 5.700 8 C 0.510 3.490 9 O -0.517 6.517 10 C 0.504 3.496 11 O -0.502 6.502 12 N -0.635 5.635 13 C 0.173 3.827 14 C -0.204 4.204 15 C -0.063 4.063 16 C -0.195 4.195 17 C 0.167 3.833 18 O -0.173 6.173 19 C -0.393 4.393 20 H 0.090 0.910 21 C 0.041 3.959 22 N -0.861 5.861 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.250 4.250 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.413 0.587 40 H 0.419 0.581 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.271 0.729 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 -16.559 -15.719 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.163 4.163 3 C -0.050 4.050 4 C -0.207 4.207 5 C -0.199 4.199 6 C 0.008 3.992 7 N -0.355 5.355 8 C 0.291 3.709 9 O -0.392 6.392 10 C 0.285 3.715 11 O -0.376 6.376 12 N -0.281 5.281 13 C 0.080 3.920 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.215 4.215 17 C 0.113 3.887 18 O -0.076 6.076 19 C -0.470 4.470 20 H 0.108 0.892 21 C -0.164 4.164 22 N -0.495 5.495 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.271 4.271 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.256 0.744 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.417 -16.256 -15.484 26.154 hybrid contribution -0.512 -0.463 0.906 1.138 sum -13.929 -16.718 -14.578 26.193 Atomic orbital electron populations 1.24060 0.96075 1.02380 1.00019 1.22729 0.95846 0.97038 1.00691 1.19921 0.95470 0.94545 0.95104 1.22026 0.98950 0.97217 1.02529 1.21871 0.99266 1.02455 0.96349 1.21477 0.94532 0.85303 0.97917 1.45787 1.43162 1.21488 1.25032 1.20102 0.80702 0.87254 0.82879 1.90783 1.63749 1.49566 1.35135 1.20045 0.80855 0.87115 0.83517 1.90781 1.63091 1.48619 1.35157 1.43141 1.38672 1.24041 1.22247 1.17398 0.93128 0.86767 0.94658 1.20515 1.05055 1.00884 0.96051 1.20521 0.96509 0.94183 0.96951 1.20289 1.07769 1.03268 0.90152 1.19076 0.91933 0.89489 0.88209 1.84023 1.60973 1.49730 1.12905 1.21237 1.21301 1.21968 0.82456 0.89225 1.25280 0.96564 0.96015 0.98536 1.70023 1.29370 1.23148 1.26975 0.85796 0.79172 0.78880 0.79695 1.19461 1.20238 1.19489 1.20846 1.09615 0.99092 0.97563 0.88359 0.87718 0.86999 0.92034 0.91689 0.91830 0.92003 0.91903 0.92039 0.90592 0.90602 0.74935 0.74395 0.86339 0.86409 0.86197 0.91906 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.99 13.70 29.01 0.40 -0.60 16 2 C -0.14 -0.82 8.76 -36.03 -0.32 -1.13 16 3 C -0.05 -0.30 0.75 -155.66 -0.12 -0.42 16 4 C -0.15 -0.88 6.95 37.16 0.26 -0.63 16 5 C -0.14 -0.81 8.28 37.16 0.31 -0.50 16 6 C 0.13 1.05 4.55 -4.04 -0.02 1.03 16 7 N -0.70 -6.79 4.95 -60.76 -0.30 -7.09 16 8 C 0.51 6.59 7.89 -11.63 -0.09 6.50 16 9 O -0.52 -7.67 16.48 5.49 0.09 -7.58 16 10 C 0.50 7.56 7.62 -11.63 -0.09 7.47 16 11 O -0.50 -8.30 14.18 5.48 0.08 -8.23 16 12 N -0.64 -10.18 5.32 -10.31 -0.05 -10.23 16 13 C 0.17 3.30 6.27 -83.77 -0.52 2.77 16 14 C -0.20 -3.79 8.65 -39.33 -0.34 -4.13 16 15 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 16 C -0.20 -4.08 9.99 -39.35 -0.39 -4.47 16 17 C 0.17 4.00 6.64 -39.14 -0.26 3.74 16 18 O -0.17 -4.87 9.76 0.02 0.00 -4.87 16 19 C -0.39 -10.84 9.44 30.89 0.29 -10.55 16 20 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 23 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 C -0.25 -5.38 9.05 -39.19 -0.35 -5.73 16 28 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 29 H 0.10 0.52 5.69 -52.49 -0.30 0.22 16 30 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.06 0.39 6.86 -51.93 -0.36 0.03 16 32 H 0.06 0.33 7.50 -51.93 -0.39 -0.06 16 33 H 0.06 0.38 7.50 -51.93 -0.39 0.00 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.37 6.86 -51.93 -0.36 0.01 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.41 3.62 5.63 -40.82 -0.23 3.39 16 40 H 0.42 6.02 8.30 -40.82 -0.34 5.68 16 41 H 0.12 2.08 6.44 -52.49 -0.34 1.74 16 42 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -31.94 378.19 -6.29 -38.23 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.79 Total: 10.10 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.74 Total: -7.17 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.40 Total: -41.53 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.17 Total: -20.67 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.94 -6.29 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835721634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.775 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds