Wall clock time and date at job start Tue Mar 31 2020 16:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99989 * 2 1 4 4 C 1.53000 * 109.47385 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47329 * 239.99963 * 3 2 1 6 6 C 1.53009 * 109.47017 * 119.99908 * 3 2 1 7 7 N 1.46497 * 109.47313 * 179.97438 * 6 3 2 8 8 C 1.34769 * 120.00179 * 180.02562 * 7 6 3 9 9 O 1.21363 * 119.99741 * 0.02562 * 8 7 6 10 10 C 1.49356 * 120.00317 * 179.97438 * 8 7 6 11 11 O 1.21369 * 119.99579 * 0.02562 * 10 8 7 12 12 N 1.34768 * 119.99903 * 179.97438 * 10 8 7 13 13 C 1.39726 * 119.99772 * 174.78665 * 12 10 8 14 14 C 1.39026 * 120.04281 * 326.28675 * 13 12 10 15 15 C 1.38135 * 120.06033 * 180.02562 * 14 13 12 16 16 C 1.38182 * 120.14727 * 359.71300 * 15 14 13 17 17 C 1.38914 * 120.08070 * 0.56403 * 16 15 14 18 18 O 1.35759 * 120.03335 * 179.71476 * 17 16 15 19 19 C 1.34830 * 116.99906 * 173.81952 * 18 17 16 20 20 H 1.07996 * 120.00265 * 354.59877 * 19 18 17 21 21 C 1.38655 * 119.99479 * 174.60137 * 19 18 17 22 22 N 1.31550 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47399 * 60.00022 * 23 21 19 25 25 H 1.48505 * 109.46878 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47178 * 299.99666 * 23 21 19 27 27 C 1.38762 * 119.93859 * 359.43847 * 17 16 15 28 28 H 1.08001 * 120.00365 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00071 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00071 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47295 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46815 * 299.99584 * 4 3 2 33 33 H 1.09003 * 109.47510 * 59.99299 * 4 3 2 34 34 H 1.09001 * 109.47193 * 300.00256 * 5 3 2 35 35 H 1.09000 * 109.46687 * 60.00658 * 5 3 2 36 36 H 1.09001 * 109.46870 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46885 * 60.00124 * 6 3 2 38 38 H 1.08995 * 109.46933 * 300.00463 * 6 3 2 39 39 H 0.97004 * 119.99940 * 0.02562 * 7 6 3 40 40 H 0.96997 * 120.00904 * 354.78604 * 12 10 8 41 41 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 42 42 H 1.08007 * 119.92653 * 180.02562 * 15 14 13 43 43 H 1.08001 * 119.96095 * 180.29791 * 16 15 14 44 44 H 0.97004 * 119.99970 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.07407 * 180.25585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3861 1.2493 7 7 3.6761 2.6545 1.2491 8 6 4.5189 2.9460 2.2596 9 8 4.6709 2.1575 3.1695 10 6 5.2666 4.2389 2.2591 11 8 5.1149 5.0273 1.3488 12 7 6.1089 4.5306 3.2698 13 6 6.8898 5.6881 3.2166 14 6 7.3648 6.1516 1.9950 15 6 8.1373 7.2956 1.9419 16 6 8.4354 7.9860 3.1012 17 6 7.9687 7.5250 4.3257 18 8 8.2670 8.2009 5.4647 19 6 7.6791 7.7751 6.6009 20 1 6.9396 6.9889 6.5645 21 6 8.0241 8.3467 7.8161 22 7 8.9253 9.3040 7.8605 23 14 7.2102 7.7563 9.3904 24 1 7.4915 6.3107 9.5812 25 1 7.7494 8.5214 10.5434 26 1 5.7432 7.9672 9.2984 27 6 7.1925 6.3762 4.3830 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.6143 3.4120 0.0011 32 1 0.4424 2.4105 -0.8892 33 1 0.4428 2.4101 0.8908 34 1 3.6514 0.5577 -1.2492 35 1 2.3164 1.3286 -2.1392 36 1 3.4877 2.3304 -1.2494 37 1 3.6514 0.5576 1.2493 38 1 2.3165 1.3283 2.1392 39 1 3.5549 3.2846 0.5216 40 1 6.1732 3.9371 4.0343 41 1 7.1304 5.6163 1.0867 42 1 8.5048 7.6540 0.9917 43 1 9.0356 8.8827 3.0557 44 1 9.1669 9.7036 8.7108 45 1 6.8250 6.0182 5.3334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835721634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:20 Heat of formation + Delta-G solvation = -69.078921 kcal Electronic energy + Delta-G solvation = -27350.703610 eV Core-core repulsion = 23333.991779 eV Total energy + Delta-G solvation = -4016.711831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.19645 -40.91792 -40.05317 -38.96124 -38.18650 -36.05595 -35.04436 -34.24115 -31.64543 -31.14931 -30.41095 -28.37518 -28.24172 -27.33814 -25.79155 -23.57387 -23.37967 -22.31252 -21.47569 -20.42456 -19.71022 -19.21352 -18.78748 -17.94940 -17.29447 -17.09694 -16.78675 -16.69337 -16.34196 -16.13705 -15.89932 -15.69793 -15.52372 -15.31142 -14.97352 -14.60673 -14.49071 -14.26485 -14.11501 -13.58290 -13.36415 -13.12864 -13.11546 -12.93317 -12.72763 -12.63499 -12.54768 -12.41110 -12.14542 -12.10937 -11.88235 -11.56884 -11.51985 -11.34652 -10.85638 -10.71660 -10.39049 -10.26838 -9.43752 -8.94963 -8.47317 -6.16002 -0.06822 0.58555 0.70266 1.09642 1.35759 1.45069 1.46193 1.51231 1.99565 2.17292 2.48609 2.80684 3.13944 3.25981 3.47121 3.66745 3.76495 3.85244 4.07941 4.23723 4.28172 4.38921 4.43334 4.57318 4.58722 4.60463 4.62725 4.76578 4.86327 4.94018 4.94732 4.99246 5.08472 5.09078 5.14870 5.25146 5.30985 5.32559 5.36041 5.60324 5.63918 5.76214 5.82311 5.90360 6.00085 6.11385 6.22421 6.58041 6.77684 6.97003 7.75174 8.74986 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002272 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.111328 B =12322.509972 C =13519.036857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C -0.042 4.042 4 C -0.151 4.151 5 C -0.142 4.142 6 C 0.129 3.871 7 N -0.681 5.681 8 C 0.517 3.483 9 O -0.538 6.538 10 C 0.507 3.493 11 O -0.515 6.515 12 N -0.635 5.635 13 C 0.178 3.822 14 C -0.194 4.194 15 C -0.048 4.048 16 C -0.206 4.206 17 C 0.134 3.866 18 O -0.223 6.223 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.020 4.020 22 N -0.916 5.916 23 Si 1.015 2.985 24 H -0.257 1.257 25 H -0.271 1.271 26 H -0.259 1.259 27 C -0.256 4.256 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.419 0.581 40 H 0.426 0.574 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.123 0.877 44 H 0.273 0.727 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.405 -18.600 -17.540 29.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.043 4.043 4 C -0.208 4.208 5 C -0.199 4.199 6 C 0.007 3.993 7 N -0.335 5.335 8 C 0.297 3.703 9 O -0.415 6.415 10 C 0.290 3.710 11 O -0.390 6.390 12 N -0.282 5.282 13 C 0.084 3.916 14 C -0.214 4.214 15 C -0.066 4.066 16 C -0.225 4.225 17 C 0.082 3.918 18 O -0.129 6.129 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.218 4.218 22 N -0.554 5.554 23 Si 0.834 3.166 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.184 1.184 27 C -0.278 4.278 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.258 0.742 40 H 0.265 0.735 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.141 0.859 44 H 0.082 0.918 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.205 -18.341 -17.382 29.491 hybrid contribution -0.061 0.043 1.114 1.117 sum -15.265 -18.298 -16.268 28.853 Atomic orbital electron populations 1.24205 0.96057 1.02985 0.99142 1.22766 0.96041 0.96953 1.01446 1.19857 0.95200 0.95025 0.94199 1.22042 0.98975 0.96842 1.02949 1.21877 0.99322 1.02330 0.96393 1.21641 0.94582 0.84210 0.98905 1.45783 1.41688 1.22064 1.23960 1.19662 0.81100 0.86135 0.83442 1.90789 1.64736 1.49838 1.36144 1.20418 0.80275 0.87682 0.82673 1.90768 1.63433 1.49239 1.35524 1.43125 1.38677 1.23227 1.23129 1.17435 0.92855 0.87279 0.94037 1.20891 1.03578 1.00596 0.96352 1.20960 0.94948 0.93152 0.97589 1.20558 1.07958 1.03898 0.90126 1.19613 0.93343 0.90641 0.88159 1.83986 1.62983 1.51914 1.14050 1.21712 1.21917 1.22348 0.82998 0.88265 1.26534 0.97174 0.95999 1.02069 1.70164 1.31887 1.25350 1.27977 0.84697 0.78326 0.78820 0.74715 1.18111 1.19592 1.18387 1.20855 1.09555 0.98926 0.98449 0.87504 0.87475 0.86422 0.92467 0.90714 0.92038 0.91863 0.91177 0.92339 0.90402 0.91008 0.74160 0.73508 0.84441 0.82145 0.85869 0.91769 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 13.70 67.78 0.93 -0.64 16 2 C -0.15 -1.41 8.76 25.65 0.22 -1.18 16 3 C -0.04 -0.42 0.75 -52.93 -0.04 -0.46 16 4 C -0.15 -1.47 6.95 71.98 0.50 -0.97 16 5 C -0.14 -1.29 8.28 71.98 0.60 -0.70 16 6 C 0.13 1.82 4.55 86.38 0.39 2.21 16 7 N -0.68 -11.82 4.95 -464.51 -2.30 -14.12 16 8 C 0.52 12.40 7.89 87.24 0.69 13.08 16 9 O -0.54 -15.14 16.48 -3.29 -0.05 -15.19 16 10 C 0.51 14.24 7.62 87.24 0.66 14.90 16 11 O -0.51 -15.74 14.18 -3.30 -0.05 -15.78 16 12 N -0.64 -19.43 5.32 -304.89 -1.62 -21.05 16 13 C 0.18 6.55 6.27 38.20 0.24 6.79 16 14 C -0.19 -6.66 8.65 22.43 0.19 -6.47 16 15 C -0.05 -1.62 10.03 22.23 0.22 -1.40 16 16 C -0.21 -8.57 9.99 22.42 0.22 -8.35 16 17 C 0.13 6.58 6.64 22.56 0.15 6.73 16 18 O -0.22 -13.20 9.76 -22.84 -0.22 -13.42 16 19 C -0.41 -23.76 9.44 67.92 0.64 -23.12 16 20 H 0.10 5.24 5.30 -2.91 -0.02 5.22 16 21 C -0.02 -1.10 5.49 84.83 0.47 -0.64 16 22 N -0.92 -55.56 13.67 21.61 0.30 -55.26 16 23 Si 1.02 42.55 29.55 68.60 2.03 44.58 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 27 C -0.26 -11.17 9.05 22.52 0.20 -10.97 16 28 H 0.11 0.71 8.06 -2.91 -0.02 0.69 16 29 H 0.11 0.83 5.69 -2.91 -0.02 0.81 16 30 H 0.12 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.06 0.60 6.86 -2.39 -0.02 0.59 16 32 H 0.07 0.59 7.50 -2.39 -0.02 0.57 16 33 H 0.06 0.63 7.50 -2.39 -0.02 0.61 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.57 6.86 -2.39 -0.02 0.55 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.42 6.38 5.63 -92.71 -0.52 5.86 16 40 H 0.43 11.83 8.30 -92.71 -0.77 11.06 16 41 H 0.14 4.30 6.44 -2.91 -0.02 4.28 16 42 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 45 H 0.13 5.55 5.71 -2.91 -0.02 5.53 16 Total: -1.00 -71.41 378.19 4.13 -67.28 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.25 Total: 34.16 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 6.30 Total: -11.19 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -3.63 Total: -90.43 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.32 Total: -44.40 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.41 4.13 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835721634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.797 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds