Wall clock time and date at job start Tue Mar 31 2020 17:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.09000 * 115.56197 * 29.30674 * 3 2 1 5 5 C 1.53073 * 117.49049 * 243.60423 * 3 2 1 6 6 C 1.52998 * 117.49653 * 175.00025 * 3 2 1 7 7 H 1.08994 * 117.50212 * 359.97438 * 6 3 2 8 8 C 1.53000 * 117.49645 * 214.97534 * 6 3 2 9 9 N 1.46502 * 109.47099 * 175.08606 * 8 6 3 10 10 C 1.34770 * 120.00032 * 180.02562 * 9 8 6 11 11 O 1.21354 * 120.00425 * 0.02562 * 10 9 8 12 12 C 1.49355 * 119.99964 * 180.02562 * 10 9 8 13 13 O 1.21381 * 120.00173 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99989 * 180.02562 * 12 10 9 15 15 C 1.39730 * 119.99737 * 174.78631 * 14 12 10 16 16 C 1.39015 * 120.04156 * 326.26017 * 15 14 12 17 17 C 1.38138 * 120.05839 * 180.02562 * 16 15 14 18 18 C 1.38184 * 120.14598 * 359.71784 * 17 16 15 19 19 C 1.38915 * 120.07952 * 0.55807 * 18 17 16 20 20 O 1.35750 * 120.02784 * 179.71779 * 19 18 17 21 21 C 1.34838 * 116.99536 * 185.63523 * 20 19 18 22 22 H 1.07994 * 120.00063 * 5.40503 * 21 20 19 23 23 C 1.38654 * 119.99534 * 185.40524 * 21 20 19 24 24 N 1.31557 * 120.00240 * 359.72465 * 23 21 20 25 25 Si 1.86803 * 119.99906 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46885 * 60.00109 * 25 23 21 27 27 H 1.48496 * 109.47269 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47215 * 300.00497 * 25 23 21 29 29 C 1.38757 * 119.94192 * 359.44430 * 19 18 17 30 30 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47100 * 299.99929 * 1 2 3 32 32 H 1.08995 * 109.47302 * 60.00045 * 1 2 3 33 33 H 1.08998 * 109.46697 * 239.99940 * 2 1 3 34 34 H 1.09004 * 109.47058 * 120.00038 * 2 1 3 35 35 H 1.08999 * 117.51501 * 145.03895 * 5 3 2 36 36 H 1.09000 * 117.51306 * 359.97438 * 5 3 2 37 37 H 1.08996 * 109.46716 * 55.09303 * 8 6 3 38 38 H 1.08998 * 109.47094 * 295.08716 * 8 6 3 39 39 H 0.97002 * 119.99561 * 0.02562 * 9 8 6 40 40 H 0.97001 * 120.00207 * 354.77983 * 14 12 10 41 41 H 1.07999 * 119.97189 * 0.04486 * 16 15 14 42 42 H 1.08003 * 119.93100 * 180.02562 * 17 16 15 43 43 H 1.08001 * 119.96043 * 180.29812 * 18 17 16 44 44 H 0.97003 * 120.00199 * 179.97438 * 24 23 21 45 45 H 1.07994 * 120.07629 * 180.25698 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 0.4813 5 6 2.8447 1.9075 -1.2163 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7720 0.1965 8 6 4.0300 2.8804 0.9031 9 7 5.4911 2.8524 1.0055 10 6 6.1399 3.8363 1.6592 11 8 5.5137 4.7453 2.1635 12 6 7.6296 3.8080 1.7630 13 8 8.2559 2.8986 1.2590 14 7 8.2783 4.7917 2.4172 15 6 9.6600 4.7101 2.6089 16 6 10.2641 3.4730 2.8014 17 6 11.6299 3.3920 2.9914 18 6 12.4007 4.5389 2.9851 19 6 11.8025 5.7787 2.7989 20 8 12.5599 6.9053 2.7986 21 6 11.9060 8.0825 2.7301 22 1 10.8269 8.1037 2.7668 23 6 12.6191 9.2658 2.6125 24 7 13.9338 9.2403 2.5732 25 14 11.7132 10.8966 2.5170 26 1 10.9040 11.0862 3.7476 27 1 12.6966 12.0028 2.3965 28 1 10.8188 10.8974 1.3315 29 6 10.4308 5.8642 2.6077 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.7225 2.9426 -1.5351 36 1 3.0109 1.1857 -2.0160 37 1 3.5955 2.8639 1.9026 38 1 3.7193 3.7886 0.3867 39 1 5.9916 2.1256 0.6026 40 1 7.7861 5.5563 2.7549 41 1 9.6651 2.5743 2.8021 42 1 12.0972 2.4297 3.1404 43 1 13.4689 4.4717 3.1291 44 1 14.4327 10.0681 2.4906 45 1 9.9640 6.8265 2.4587 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835722008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:53 Heat of formation + Delta-G solvation = -71.622294 kcal Electronic energy + Delta-G solvation = -26636.865954 eV Core-core repulsion = 22620.043834 eV Total energy + Delta-G solvation = -4016.822120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16807 -40.85973 -39.95933 -39.07501 -38.18909 -36.26548 -35.38060 -34.24130 -32.92192 -31.15994 -30.43533 -28.77246 -27.34896 -25.67530 -24.63314 -23.56666 -22.98020 -22.13176 -21.59101 -21.12119 -20.05583 -19.68304 -18.98762 -17.92928 -17.27994 -17.04461 -16.95620 -16.73430 -16.11943 -16.00397 -15.76862 -15.61298 -15.50719 -15.31752 -15.04721 -14.66865 -14.60571 -14.33688 -14.13224 -13.60012 -13.34151 -13.23286 -13.08770 -12.93543 -12.68896 -12.59494 -12.46342 -12.44469 -12.15614 -12.13423 -11.87459 -11.47942 -11.40427 -11.04884 -10.97341 -10.75980 -10.64530 -10.28674 -9.43912 -8.95173 -8.47264 -6.16081 -0.07214 0.58208 0.70096 1.12836 1.35866 1.45945 1.51355 1.99010 2.17356 2.42037 2.80290 2.81332 3.13922 3.25948 3.46933 3.53061 3.85461 3.97644 4.07795 4.18271 4.28098 4.30805 4.38764 4.41810 4.53064 4.57264 4.58763 4.64908 4.70698 4.86927 4.98855 4.99186 5.00673 5.09237 5.17930 5.22775 5.24134 5.26687 5.30839 5.32963 5.51344 5.60184 5.63734 5.83187 5.99993 6.11402 6.22756 6.58481 6.77644 6.97036 7.75063 8.75050 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.001962 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.525859 B =14267.594882 C =15439.285925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.134 4.134 4 H 0.109 0.891 5 C -0.171 4.171 6 C -0.171 4.171 7 H 0.121 0.879 8 C 0.149 3.851 9 N -0.681 5.681 10 C 0.517 3.483 11 O -0.539 6.539 12 C 0.507 3.493 13 O -0.515 6.515 14 N -0.635 5.635 15 C 0.177 3.823 16 C -0.194 4.194 17 C -0.048 4.048 18 C -0.206 4.206 19 C 0.134 3.866 20 O -0.224 6.224 21 C -0.415 4.415 22 H 0.101 0.899 23 C -0.019 4.019 24 N -0.916 5.916 25 Si 1.015 2.985 26 H -0.257 1.257 27 H -0.272 1.272 28 H -0.259 1.259 29 C -0.256 4.256 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.422 0.578 40 H 0.426 0.574 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.123 0.877 44 H 0.273 0.727 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.353 -17.326 -4.913 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.153 4.153 4 H 0.127 0.873 5 C -0.207 4.207 6 C -0.189 4.189 7 H 0.139 0.861 8 C 0.026 3.974 9 N -0.334 5.334 10 C 0.297 3.703 11 O -0.416 6.416 12 C 0.290 3.710 13 O -0.390 6.390 14 N -0.282 5.282 15 C 0.084 3.916 16 C -0.215 4.215 17 C -0.066 4.066 18 C -0.226 4.226 19 C 0.083 3.917 20 O -0.130 6.130 21 C -0.491 4.491 22 H 0.119 0.881 23 C -0.217 4.217 24 N -0.554 5.554 25 Si 0.835 3.165 26 H -0.181 1.181 27 H -0.196 1.196 28 H -0.183 1.183 29 C -0.278 4.278 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.260 0.740 40 H 0.265 0.735 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.141 0.859 44 H 0.082 0.918 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -25.029 -17.180 -4.926 30.755 hybrid contribution 0.122 1.125 -0.074 1.134 sum -24.906 -16.055 -5.000 30.052 Atomic orbital electron populations 1.21747 0.95051 1.02001 1.01974 1.21153 0.96348 0.93391 1.02364 1.22562 0.91773 0.98979 1.01945 0.87283 1.23360 1.03013 1.03018 0.91350 1.22497 0.96687 0.98985 1.00782 0.86092 1.21140 0.77207 0.98004 1.01007 1.45722 1.08758 1.25465 1.53451 1.19655 0.87167 0.83351 0.80121 1.90785 1.68341 1.35508 1.46991 1.20416 0.89130 0.82640 0.78837 1.90774 1.68579 1.34865 1.44767 1.43125 1.06277 1.24365 1.54402 1.17439 0.81934 0.93997 0.98268 1.20893 0.95645 0.96061 1.08860 1.20963 0.92578 0.97805 0.95294 1.20561 1.00791 0.90076 1.11149 1.19603 0.90316 0.88277 0.93501 1.83986 1.35063 1.12488 1.81478 1.21739 0.92814 0.81444 1.53092 0.88133 1.26535 0.96632 1.02826 0.95720 1.70168 1.07381 1.29704 1.48144 0.84695 0.77517 0.74457 0.79878 1.18111 1.19625 1.18343 1.20852 0.93533 0.98526 1.14858 0.92224 0.92636 0.92613 0.91418 0.91398 0.88528 0.87747 0.90389 0.90864 0.74016 0.73487 0.84445 0.82136 0.85861 0.91785 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.87 71.98 0.71 -0.35 16 2 C -0.10 -0.72 6.22 30.60 0.19 -0.53 16 3 C -0.13 -1.15 5.46 -10.77 -0.06 -1.21 16 4 H 0.11 0.93 8.07 -2.39 -0.02 0.91 16 5 C -0.17 -1.52 9.83 30.62 0.30 -1.22 16 6 C -0.17 -1.65 5.57 -10.79 -0.06 -1.71 16 7 H 0.12 1.02 8.04 -2.39 -0.02 1.00 16 8 C 0.15 2.04 5.96 86.38 0.51 2.56 16 9 N -0.68 -11.75 5.55 -464.52 -2.58 -14.33 16 10 C 0.52 12.43 7.89 87.24 0.69 13.11 16 11 O -0.54 -15.17 16.48 -3.26 -0.05 -15.22 16 12 C 0.51 14.31 7.62 87.24 0.66 14.97 16 13 O -0.51 -15.89 14.18 -3.34 -0.05 -15.94 16 14 N -0.64 -19.48 5.32 -304.87 -1.62 -21.10 16 15 C 0.18 6.56 6.27 38.20 0.24 6.80 16 16 C -0.19 -6.71 8.65 22.43 0.19 -6.52 16 17 C -0.05 -1.63 10.03 22.23 0.22 -1.40 16 18 C -0.21 -8.61 9.99 22.42 0.22 -8.39 16 19 C 0.13 6.62 6.64 22.56 0.15 6.77 16 20 O -0.22 -13.28 9.76 -22.82 -0.22 -13.50 16 21 C -0.41 -23.82 9.44 67.92 0.64 -23.18 16 22 H 0.10 5.28 5.30 -2.91 -0.02 5.26 16 23 C -0.02 -1.07 5.49 84.83 0.47 -0.60 16 24 N -0.92 -55.62 13.67 21.61 0.30 -55.32 16 25 Si 1.02 42.51 29.55 68.60 2.03 44.54 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 29 C -0.26 -11.18 9.05 22.52 0.20 -10.98 16 30 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 0.48 7.88 -2.39 -0.02 0.46 16 34 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.10 0.89 8.03 -2.39 -0.02 0.88 16 36 H 0.10 0.80 8.03 -2.39 -0.02 0.79 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.08 7.88 -2.39 -0.02 1.06 16 39 H 0.42 6.18 7.87 -92.71 -0.73 5.45 16 40 H 0.43 11.81 8.30 -92.71 -0.77 11.04 16 41 H 0.14 4.32 6.43 -2.91 -0.02 4.30 16 42 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.13 5.56 5.71 -2.91 -0.02 5.55 16 Total: -1.00 -71.72 386.47 2.63 -69.09 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.46 Total: 33.66 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 5.29 Total: -11.88 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -3.90 Total: -90.76 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.32 Total: -44.66 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -71.72 2.63 -69.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835722008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.532 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds