Wall clock time and date at job start Tue Mar 31 2020 17:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00389 * 2 1 4 4 H 1.09000 * 109.99126 * 358.91768 * 3 2 1 5 5 O 1.43743 * 109.87828 * 237.83514 * 3 2 1 6 6 C 1.44384 * 106.97564 * 214.06521 * 5 3 2 7 7 C 1.54996 * 103.49085 * 40.05492 * 6 5 3 8 8 C 1.54096 * 109.87887 * 120.00257 * 3 2 1 9 9 H 1.09001 * 110.49034 * 2.64559 * 8 3 2 10 10 N 1.46506 * 110.48804 * 240.13303 * 8 3 2 11 11 C 1.34767 * 120.00230 * 155.00304 * 10 8 3 12 12 O 1.21592 * 120.00264 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00249 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00320 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47297 * 179.97438 * 14 13 11 16 16 C 1.38300 * 119.93635 * 269.73075 * 15 14 13 17 17 C 1.38103 * 120.07234 * 179.72037 * 16 15 14 18 18 C 1.38881 * 119.92859 * 0.57458 * 17 16 15 19 19 O 1.35743 * 120.07033 * 179.67702 * 18 17 16 20 20 C 1.34829 * 117.00323 * 174.48588 * 19 18 17 21 21 H 1.08000 * 119.99772 * 5.06302 * 20 19 18 22 22 C 1.38655 * 120.00285 * 185.06067 * 20 19 18 23 23 N 1.31556 * 119.99986 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99817 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47223 * 90.00094 * 24 22 20 26 26 H 1.48499 * 109.47046 * 209.99924 * 24 22 20 27 27 H 1.48492 * 109.47326 * 329.99691 * 24 22 20 28 28 C 1.38884 * 119.86117 * 359.69916 * 18 17 16 29 29 C 1.38100 * 119.93126 * 0.02562 * 28 18 17 30 30 H 1.07995 * 120.00648 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99590 * 359.97438 * 1 2 3 32 32 H 1.08004 * 119.99590 * 180.02562 * 2 1 3 33 33 H 1.08994 * 110.62199 * 158.55770 * 6 5 3 34 34 H 1.09001 * 110.61303 * 281.56177 * 6 5 3 35 35 H 1.08996 * 110.90777 * 204.78477 * 7 6 5 36 36 H 1.08999 * 110.90383 * 81.17948 * 7 6 5 37 37 H 0.97000 * 119.99264 * 334.99303 * 10 8 3 38 38 H 0.97007 * 119.99682 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.46907 * 60.00398 * 14 13 11 40 40 H 1.08999 * 109.47251 * 300.00301 * 14 13 11 41 41 H 1.08004 * 119.96372 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.03412 * 180.27287 * 17 16 15 43 43 H 0.97002 * 119.99992 * 180.02562 * 23 22 20 44 44 H 1.08004 * 120.03270 * 180.02562 * 28 18 17 45 45 H 1.08003 * 119.96708 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3630 2.1399 -0.0193 5 8 2.9312 1.3685 -1.1443 6 6 4.1113 2.0948 -0.7388 7 6 4.3854 1.5689 0.6932 8 6 2.9531 1.3965 1.2550 9 1 2.8793 0.4813 1.8425 10 7 2.5774 2.5569 2.0664 11 6 2.8354 2.5663 3.3891 12 8 3.3797 1.6115 3.9092 13 7 2.4902 3.6341 4.1355 14 6 2.7702 3.6441 5.5735 15 6 2.2898 4.9420 6.1698 16 6 3.1427 6.0287 6.2360 17 6 2.7036 7.2212 6.7766 18 6 1.4077 7.3249 7.2651 19 8 0.9751 8.4937 7.8031 20 6 -0.3251 8.5623 8.1533 21 1 -0.9516 7.6859 8.0779 22 6 -0.8579 9.7581 8.6103 23 7 -0.0948 10.8258 8.7018 24 14 -2.6591 9.8528 9.0962 25 1 -2.8008 9.5256 10.5377 26 1 -3.1672 11.2259 8.8480 27 1 -3.4412 8.8823 8.2891 28 6 0.5553 6.2302 7.2024 29 6 0.9986 5.0422 6.6554 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 4.9484 1.8661 -1.3984 34 1 3.9155 3.1670 -0.7230 35 1 4.9461 2.3001 1.2754 36 1 4.9091 0.6134 0.6630 37 1 2.1430 3.3186 1.6515 38 1 2.0563 4.3961 3.7206 39 1 3.8436 3.5458 5.7353 40 1 2.2531 2.8114 6.0501 41 1 4.1521 5.9458 5.8607 42 1 3.3688 8.0707 6.8240 43 1 -0.4675 11.6623 9.0219 44 1 -0.4532 6.3079 7.5811 45 1 0.3364 4.1904 6.6067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836271843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:07 Heat of formation + Delta-G solvation = -52.596686 kcal Electronic energy + Delta-G solvation = -27006.412859 eV Core-core repulsion = 22990.415751 eV Total energy + Delta-G solvation = -4015.997108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.68794 -39.47754 -38.99222 -36.93105 -34.87571 -34.37906 -34.16211 -32.40788 -31.21085 -30.30786 -29.72075 -28.19291 -25.88064 -24.70346 -23.30935 -22.17590 -22.07652 -20.88622 -20.65226 -20.34226 -18.51140 -18.09483 -17.35413 -16.95150 -16.80730 -15.78893 -15.58639 -15.38365 -14.83725 -14.70881 -14.51730 -14.41125 -14.24489 -13.87633 -13.73249 -13.53371 -13.40147 -12.92880 -12.81378 -12.79714 -12.40699 -12.08443 -11.75216 -11.68158 -11.54603 -11.44564 -11.40952 -10.99276 -10.82247 -10.71506 -10.51567 -10.34072 -10.15535 -9.98083 -9.45879 -9.35817 -8.94157 -8.84428 -8.31630 -7.36371 -6.55766 -4.14709 1.75437 1.97875 2.10049 2.70034 3.06682 3.07443 3.12255 3.13506 3.62231 3.87915 4.16471 4.18616 4.22405 4.49079 4.53149 4.62212 4.78926 4.86820 4.99175 5.02557 5.12897 5.20176 5.29973 5.37723 5.41329 5.50013 5.59619 5.62457 5.63916 5.78723 5.89413 6.09158 6.15921 6.17394 6.25755 6.32274 6.48569 6.52252 6.57709 6.76506 6.80645 6.94914 7.12393 7.24660 7.32284 7.68378 7.88868 7.95214 8.54018 8.89548 9.57518 10.61671 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.001959 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.564166 B =14286.301200 C =14895.601599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.155 4.155 3 C 0.100 3.900 4 H 0.077 0.923 5 O -0.366 6.366 6 C 0.044 3.956 7 C -0.166 4.166 8 C 0.140 3.860 9 H 0.108 0.892 10 N -0.743 5.743 11 C 0.703 3.297 12 O -0.594 6.594 13 N -0.736 5.736 14 C 0.198 3.802 15 C -0.215 4.215 16 C -0.053 4.053 17 C -0.196 4.196 18 C 0.161 3.839 19 O -0.173 6.173 20 C -0.394 4.394 21 H 0.094 0.906 22 C 0.040 3.960 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.237 4.237 29 C -0.050 4.050 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.396 0.604 38 H 0.398 0.602 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -16.447 -16.491 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.041 3.959 4 H 0.095 0.905 5 O -0.285 6.285 6 C -0.033 4.033 7 C -0.205 4.205 8 C 0.033 3.967 9 H 0.126 0.874 10 N -0.399 5.399 11 C 0.403 3.597 12 O -0.472 6.472 13 N -0.391 5.391 14 C 0.075 3.925 15 C -0.217 4.217 16 C -0.072 4.072 17 C -0.215 4.215 18 C 0.106 3.894 19 O -0.075 6.075 20 C -0.470 4.470 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.493 5.493 24 Si 0.767 3.233 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.257 4.257 29 C -0.068 4.068 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.146 0.854 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.411 -16.940 -16.044 23.745 hybrid contribution -1.310 0.938 0.121 1.616 sum 3.101 -16.002 -15.922 22.786 Atomic orbital electron populations 1.23925 0.95647 1.02460 0.98447 1.22757 0.95801 0.97392 1.01378 1.22070 0.92139 0.96527 0.85138 0.90481 1.88970 1.30385 1.76421 1.32701 1.23631 0.88227 0.96072 0.95339 1.23586 0.97272 1.03238 0.96418 1.22078 0.92813 0.90319 0.91481 0.87382 1.45176 1.66650 1.20929 1.07149 1.15993 0.79362 0.83479 0.80879 1.90916 1.48838 1.35563 1.71900 1.45531 1.65073 1.18960 1.09556 1.19836 0.99951 0.95125 0.77555 1.19213 0.95831 0.95541 1.11084 1.20534 0.98022 0.91705 0.96955 1.20220 0.95124 0.98732 1.07448 1.19444 0.92883 0.86811 0.90284 1.83976 1.28049 1.28957 1.66556 1.21356 0.83029 0.97876 1.44707 0.88912 1.25325 1.00356 0.94153 0.96646 1.70035 1.36122 1.00815 1.42332 0.85690 0.80221 0.78245 0.79173 1.19774 1.20172 1.19140 1.21162 1.01609 0.93636 1.09259 1.20650 0.94309 0.96414 0.95475 0.87639 0.88287 0.86435 0.88585 0.91942 0.89404 0.89504 0.77001 0.76854 0.91707 0.91735 0.86969 0.86385 0.91855 0.85425 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 14.32 29.01 0.42 -0.75 16 2 C -0.15 -1.22 8.94 -36.03 -0.32 -1.54 16 3 C 0.10 0.81 3.57 -27.31 -0.10 0.72 16 4 H 0.08 0.57 7.31 -51.93 -0.38 0.19 16 5 O -0.37 -3.39 11.17 -35.23 -0.39 -3.78 16 6 C 0.04 0.31 7.72 38.21 0.29 0.61 16 7 C -0.17 -1.33 6.88 -24.72 -0.17 -1.50 16 8 C 0.14 1.25 3.03 -66.40 -0.20 1.05 16 9 H 0.11 1.16 7.10 -51.93 -0.37 0.79 16 10 N -0.74 -6.85 5.08 -57.18 -0.29 -7.14 16 11 C 0.70 8.95 8.57 -86.93 -0.74 8.21 16 12 O -0.59 -9.85 15.99 5.28 0.08 -9.76 16 13 N -0.74 -8.81 5.55 -66.42 -0.37 -9.17 16 14 C 0.20 2.70 5.80 -5.20 -0.03 2.67 16 15 C -0.22 -3.34 5.25 -104.58 -0.55 -3.89 16 16 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 17 C -0.20 -3.87 9.99 -39.39 -0.39 -4.26 16 18 C 0.16 3.67 6.65 -39.10 -0.26 3.41 16 19 O -0.17 -4.74 9.76 0.07 0.00 -4.73 16 20 C -0.39 -10.58 9.49 30.89 0.29 -10.29 16 21 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.44 13.67 55.48 0.76 -23.68 16 24 Si 0.94 19.82 29.55 -169.99 -5.02 14.79 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 27 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 28 C -0.24 -4.82 9.17 -39.39 -0.36 -5.18 16 29 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 30 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.10 0.63 7.85 -52.48 -0.41 0.22 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.73 8.36 -40.82 -0.34 2.39 16 38 H 0.40 4.13 8.48 -40.82 -0.35 3.79 16 39 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 42 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.13 2.62 5.64 -52.48 -0.30 2.32 16 45 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -31.96 383.54 -8.63 -40.59 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.19 Total: 9.37 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.99 Total: -12.26 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.10 Total: -39.99 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.31 Total: -18.28 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.96 -8.63 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836271843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.007 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds