Wall clock time and date at job start Tue Mar 31 2020 17:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00389 * 2 1 4 4 H 1.09000 * 109.99126 * 358.91768 * 3 2 1 5 5 O 1.43743 * 109.87828 * 237.83514 * 3 2 1 6 6 C 1.44384 * 106.97564 * 214.06521 * 5 3 2 7 7 C 1.54996 * 103.49085 * 40.05492 * 6 5 3 8 8 C 1.54096 * 109.87887 * 120.00257 * 3 2 1 9 9 H 1.09001 * 110.49034 * 2.64559 * 8 3 2 10 10 N 1.46506 * 110.48804 * 240.13303 * 8 3 2 11 11 C 1.34767 * 120.00230 * 155.00304 * 10 8 3 12 12 O 1.21592 * 120.00264 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00249 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00320 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47297 * 179.97438 * 14 13 11 16 16 C 1.38300 * 119.93635 * 269.73075 * 15 14 13 17 17 C 1.38103 * 120.07234 * 179.72037 * 16 15 14 18 18 C 1.38881 * 119.92859 * 0.57458 * 17 16 15 19 19 O 1.35743 * 120.07033 * 179.67702 * 18 17 16 20 20 C 1.34829 * 117.00323 * 174.48588 * 19 18 17 21 21 H 1.08000 * 119.99772 * 5.06302 * 20 19 18 22 22 C 1.38655 * 120.00285 * 185.06067 * 20 19 18 23 23 N 1.31556 * 119.99986 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99817 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47223 * 90.00094 * 24 22 20 26 26 H 1.48499 * 109.47046 * 209.99924 * 24 22 20 27 27 H 1.48492 * 109.47326 * 329.99691 * 24 22 20 28 28 C 1.38884 * 119.86117 * 359.69916 * 18 17 16 29 29 C 1.38100 * 119.93126 * 0.02562 * 28 18 17 30 30 H 1.07995 * 120.00648 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99590 * 359.97438 * 1 2 3 32 32 H 1.08004 * 119.99590 * 180.02562 * 2 1 3 33 33 H 1.08994 * 110.62199 * 158.55770 * 6 5 3 34 34 H 1.09001 * 110.61303 * 281.56177 * 6 5 3 35 35 H 1.08996 * 110.90777 * 204.78477 * 7 6 5 36 36 H 1.08999 * 110.90383 * 81.17948 * 7 6 5 37 37 H 0.97000 * 119.99264 * 334.99303 * 10 8 3 38 38 H 0.97007 * 119.99682 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.46907 * 60.00398 * 14 13 11 40 40 H 1.08999 * 109.47251 * 300.00301 * 14 13 11 41 41 H 1.08004 * 119.96372 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.03412 * 180.27287 * 17 16 15 43 43 H 0.97002 * 119.99992 * 180.02562 * 23 22 20 44 44 H 1.08004 * 120.03270 * 180.02562 * 28 18 17 45 45 H 1.08003 * 119.96708 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3630 2.1399 -0.0193 5 8 2.9312 1.3685 -1.1443 6 6 4.1113 2.0948 -0.7388 7 6 4.3854 1.5689 0.6932 8 6 2.9531 1.3965 1.2550 9 1 2.8793 0.4813 1.8425 10 7 2.5774 2.5569 2.0664 11 6 2.8354 2.5663 3.3891 12 8 3.3797 1.6115 3.9092 13 7 2.4902 3.6341 4.1355 14 6 2.7702 3.6441 5.5735 15 6 2.2898 4.9420 6.1698 16 6 3.1427 6.0287 6.2360 17 6 2.7036 7.2212 6.7766 18 6 1.4077 7.3249 7.2651 19 8 0.9751 8.4937 7.8031 20 6 -0.3251 8.5623 8.1533 21 1 -0.9516 7.6859 8.0779 22 6 -0.8579 9.7581 8.6103 23 7 -0.0948 10.8258 8.7018 24 14 -2.6591 9.8528 9.0962 25 1 -2.8008 9.5256 10.5377 26 1 -3.1672 11.2259 8.8480 27 1 -3.4412 8.8823 8.2891 28 6 0.5553 6.2302 7.2024 29 6 0.9986 5.0422 6.6554 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 4.9484 1.8661 -1.3984 34 1 3.9155 3.1670 -0.7230 35 1 4.9461 2.3001 1.2754 36 1 4.9091 0.6134 0.6630 37 1 2.1430 3.3186 1.6515 38 1 2.0563 4.3961 3.7206 39 1 3.8436 3.5458 5.7353 40 1 2.2531 2.8114 6.0501 41 1 4.1521 5.9458 5.8607 42 1 3.3688 8.0707 6.8240 43 1 -0.4675 11.6623 9.0219 44 1 -0.4532 6.3079 7.5811 45 1 0.3364 4.1904 6.6067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836271843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:06 Heat of formation + Delta-G solvation = -74.743411 kcal Electronic energy + Delta-G solvation = -27007.373213 eV Core-core repulsion = 22990.415751 eV Total energy + Delta-G solvation = -4016.957462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.52625 -40.84004 -40.12019 -38.50811 -35.78443 -35.51594 -34.76867 -34.27277 -32.12808 -31.81366 -30.91995 -28.91296 -27.60901 -26.12231 -23.91810 -23.64037 -23.02674 -22.09818 -21.68106 -21.05274 -19.88495 -19.43653 -18.83392 -18.03046 -17.42981 -16.74473 -16.56305 -16.37917 -16.25148 -16.08999 -15.89549 -15.54455 -15.29860 -15.15913 -14.87092 -14.82528 -14.37649 -14.24614 -14.08895 -13.69984 -13.47071 -13.39013 -13.02676 -12.98564 -12.55262 -12.37095 -12.33653 -12.22226 -12.12517 -12.10818 -12.07897 -11.40016 -11.19764 -10.83173 -10.80110 -10.63653 -10.26696 -9.81996 -9.74914 -9.01624 -8.48353 -6.16512 0.52731 0.58397 1.19465 1.36067 1.43827 1.52963 1.74144 2.13741 2.17086 2.79093 3.00791 3.14393 3.42941 3.48882 3.53564 3.59580 3.86792 3.88946 4.02663 4.04282 4.18126 4.22029 4.26221 4.44313 4.47854 4.57502 4.69047 4.77066 4.81619 4.83874 4.89022 4.98233 5.02118 5.05068 5.14719 5.27265 5.41520 5.47727 5.53264 5.61831 5.69190 5.69569 5.76176 5.87242 5.97314 6.01574 6.16901 6.96553 7.06294 7.56687 7.75934 8.74390 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.001959 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.564166 B =14286.301200 C =14895.601599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.175 4.175 3 C 0.105 3.895 4 H 0.087 0.913 5 O -0.383 6.383 6 C 0.045 3.955 7 C -0.163 4.163 8 C 0.139 3.861 9 H 0.090 0.910 10 N -0.727 5.727 11 C 0.704 3.296 12 O -0.632 6.632 13 N -0.729 5.729 14 C 0.204 3.796 15 C -0.181 4.181 16 C -0.042 4.042 17 C -0.205 4.205 18 C 0.122 3.878 19 O -0.229 6.229 20 C -0.413 4.413 21 H 0.104 0.896 22 C -0.022 4.022 23 N -0.919 5.919 24 Si 1.018 2.982 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.252 1.252 28 C -0.244 4.244 29 C -0.044 4.044 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.410 0.590 38 H 0.408 0.592 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.147 0.853 42 H 0.115 0.885 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 -18.705 -18.199 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.193 4.193 3 C 0.046 3.954 4 H 0.105 0.895 5 O -0.302 6.302 6 C -0.031 4.031 7 C -0.202 4.202 8 C 0.033 3.967 9 H 0.108 0.892 10 N -0.383 5.383 11 C 0.404 3.596 12 O -0.513 6.513 13 N -0.385 5.385 14 C 0.081 3.919 15 C -0.182 4.182 16 C -0.060 4.060 17 C -0.224 4.224 18 C 0.071 3.929 19 O -0.135 6.135 20 C -0.489 4.489 21 H 0.121 0.879 22 C -0.220 4.220 23 N -0.557 5.557 24 Si 0.837 3.163 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.175 1.175 28 C -0.263 4.263 29 C -0.063 4.063 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.247 0.753 38 H 0.243 0.757 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.165 0.835 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.031 -19.234 -17.815 26.525 hybrid contribution -0.975 1.305 0.455 1.691 sum 3.056 -17.929 -17.359 25.142 Atomic orbital electron populations 1.24123 0.95423 1.03390 0.96977 1.22853 0.96305 0.97424 1.02736 1.22049 0.91940 0.97061 0.84309 0.89520 1.88959 1.31127 1.76867 1.33243 1.23742 0.88081 0.96418 0.94847 1.23542 0.96479 1.03262 0.96926 1.22080 0.93864 0.89325 0.91463 0.89234 1.45005 1.65831 1.21473 1.06014 1.16037 0.79011 0.82885 0.81662 1.90902 1.50597 1.36971 1.72866 1.45245 1.65114 1.19280 1.08833 1.19712 1.00290 0.93508 0.78397 1.19484 0.94810 0.95913 1.08023 1.20879 0.99631 0.90272 0.95259 1.20454 0.94136 1.00203 1.07639 1.20004 0.94540 0.86646 0.91670 1.83946 1.28477 1.31390 1.69698 1.21826 0.83550 0.98612 1.44907 0.87895 1.26579 1.05374 0.93504 0.96536 1.70178 1.38553 1.01653 1.45268 0.84596 0.74024 0.78581 0.79107 1.18946 1.19700 1.17539 1.21244 1.01126 0.94262 1.09685 1.20942 0.95305 0.95911 0.94131 0.86487 0.87646 0.86452 0.87198 0.90909 0.89933 0.89397 0.75348 0.75653 0.91127 0.91445 0.83488 0.86713 0.91812 0.86228 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 14.32 67.78 0.97 -0.96 16 2 C -0.17 -2.49 8.94 25.65 0.23 -2.26 16 3 C 0.10 1.51 3.57 30.22 0.11 1.61 16 4 H 0.09 1.06 7.31 -2.39 -0.02 1.04 16 5 O -0.38 -6.34 11.17 -148.98 -1.66 -8.00 16 6 C 0.05 0.54 7.72 72.67 0.56 1.10 16 7 C -0.16 -2.32 6.88 31.89 0.22 -2.10 16 8 C 0.14 2.25 3.03 45.98 0.14 2.39 16 9 H 0.09 1.83 7.10 -2.39 -0.02 1.82 16 10 N -0.73 -11.53 5.08 -453.09 -2.30 -13.83 16 11 C 0.70 15.99 8.57 179.06 1.53 17.52 16 12 O -0.63 -19.65 15.99 -4.01 -0.06 -19.71 16 13 N -0.73 -14.80 5.55 -482.31 -2.68 -17.48 16 14 C 0.20 4.78 5.80 85.63 0.50 5.27 16 15 C -0.18 -5.00 5.25 -19.83 -0.10 -5.10 16 16 C -0.04 -1.25 9.69 22.25 0.22 -1.04 16 17 C -0.21 -8.05 9.99 22.39 0.22 -7.82 16 18 C 0.12 5.73 6.65 22.58 0.15 5.88 16 19 O -0.23 -13.25 9.76 -22.66 -0.22 -13.47 16 20 C -0.41 -23.19 9.49 67.92 0.64 -22.54 16 21 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 22 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 23 N -0.92 -55.07 13.67 21.61 0.30 -54.78 16 24 Si 1.02 41.54 29.55 68.60 2.03 43.57 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 28 C -0.24 -9.83 9.17 22.39 0.21 -9.62 16 29 C -0.04 -1.37 9.69 22.25 0.22 -1.16 16 30 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 31 H 0.11 1.10 7.85 -2.91 -0.02 1.07 16 32 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.41 4.34 8.36 -92.71 -0.77 3.57 16 38 H 0.41 6.86 8.48 -92.70 -0.79 6.07 16 39 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 41 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 45 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -73.46 383.54 1.13 -72.32 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.53 Total: 30.98 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 6.27 Total: -19.59 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -4.69 Total: -86.08 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.95 Total: -41.19 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -73.46 1.13 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836271843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.421 kcal (2) G-P(sol) polarization free energy of solvation -73.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds