Wall clock time and date at job start Tue Mar 31 2020 16:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47004 * 2 1 4 4 C 1.52996 * 109.47094 * 119.99954 * 2 1 3 5 5 H 1.09002 * 109.47195 * 300.00152 * 4 2 1 6 6 C 1.52997 * 109.47005 * 180.02562 * 4 2 1 7 7 O 1.42902 * 109.47208 * 304.99721 * 6 4 2 8 8 O 1.42901 * 109.47226 * 60.00001 * 4 2 1 9 9 N 1.41598 * 114.00198 * 189.39745 * 8 4 2 10 10 C 1.34768 * 120.00268 * 185.02223 * 9 8 4 11 11 O 1.21674 * 119.99900 * 4.51102 * 10 9 8 12 12 C 1.46890 * 120.00433 * 184.51135 * 10 9 8 13 13 C 1.36120 * 125.44212 * 185.46465 * 12 10 9 14 14 C 1.41699 * 107.75355 * 180.24142 * 13 12 10 15 15 C 1.40019 * 133.35237 * 179.82103 * 14 13 12 16 16 C 1.36584 * 119.82887 * 179.97438 * 15 14 13 17 17 C 1.38854 * 120.60108 * 359.97438 * 16 15 14 18 18 C 1.37852 * 120.63152 * 359.97438 * 17 16 15 19 19 C 1.39087 * 119.81333 * 0.02562 * 18 17 16 20 20 N 1.37841 * 133.15884 * 180.02562 * 19 18 17 21 21 C 1.36884 * 125.61969 * 359.94604 * 20 19 18 22 22 H 1.08001 * 120.00059 * 125.85189 * 21 20 19 23 23 C 1.39010 * 120.00068 * 305.84603 * 21 20 19 24 24 N 1.31346 * 119.99991 * 3.52857 * 23 21 20 25 25 Si 1.86803 * 119.99933 * 183.24998 * 23 21 20 26 26 H 1.48501 * 109.47153 * 185.27763 * 25 23 21 27 27 H 1.48500 * 109.47358 * 305.28123 * 25 23 21 28 28 H 1.48505 * 109.46830 * 65.28254 * 25 23 21 29 29 H 1.09000 * 109.46618 * 300.00342 * 1 2 3 30 30 H 1.09003 * 109.46569 * 60.00075 * 1 2 3 31 31 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46722 * 240.00204 * 2 1 3 33 33 H 1.09003 * 109.46833 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47178 * 299.99824 * 3 2 1 35 35 H 1.09002 * 109.47555 * 59.99810 * 3 2 1 36 36 H 1.08998 * 109.47640 * 64.99972 * 6 4 2 37 37 H 1.09007 * 109.47206 * 185.00080 * 6 4 2 38 38 H 0.96704 * 113.99719 * 179.97438 * 7 6 4 39 39 H 0.97000 * 119.99538 * 5.02794 * 9 8 4 40 40 H 1.08003 * 126.12034 * 0.02562 * 13 12 10 41 41 H 1.07993 * 120.08487 * 359.93779 * 15 14 13 42 42 H 1.07994 * 119.69628 * 180.02562 * 16 15 14 43 43 H 1.07991 * 119.68420 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.08831 * 180.02562 * 18 17 16 45 45 H 0.96995 * 119.99890 * 354.19393 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 8 4.0468 -1.2897 0.0285 8 8 1.5637 -2.0685 1.2492 9 7 1.8009 -2.7632 2.4601 10 6 1.4930 -4.0716 2.5577 11 8 1.0883 -4.6758 1.5822 12 6 1.6459 -4.7684 3.8418 13 6 1.4698 -6.1033 4.0414 14 6 1.7051 -6.3698 5.4131 15 6 1.6692 -7.5372 6.1853 16 6 1.9516 -7.4776 7.5203 17 6 2.2752 -6.2683 8.1211 18 6 2.3181 -5.1058 7.3813 19 6 2.0343 -5.1415 6.0202 20 7 1.9960 -4.1737 5.0394 21 6 2.2549 -2.8422 5.2227 22 1 2.9973 -2.3476 4.6138 23 6 1.5623 -2.1265 6.1924 24 7 0.7097 -2.7422 6.9794 25 14 1.8498 -0.2904 6.3816 26 1 1.0942 0.2104 7.5578 27 1 3.2992 -0.0340 6.5785 28 1 1.3844 0.4120 5.1587 29 1 -0.3632 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 3.9330 0.3032 1.3393 37 1 3.9334 -1.3101 2.0914 38 1 5.0109 -1.3213 -0.0406 39 1 2.1849 -2.2973 3.2193 40 1 1.1960 -6.8288 3.2896 41 1 1.4183 -8.4822 5.7267 42 1 1.9237 -8.3794 8.1139 43 1 2.4963 -6.2383 9.1777 44 1 2.5712 -4.1701 7.8575 45 1 0.5002 -3.6774 6.8301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836898048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:03 Heat of formation + Delta-G solvation = -31.643991 kcal Electronic energy + Delta-G solvation = -29421.203789 eV Core-core repulsion = 25406.115258 eV Total energy + Delta-G solvation = -4015.088531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.79858 -39.03478 -37.98994 -36.19514 -35.92870 -34.87674 -33.88184 -31.53644 -30.68013 -29.16111 -28.69781 -28.01584 -26.94530 -24.93120 -23.64813 -22.74748 -21.13583 -20.54880 -20.26776 -19.42631 -18.61663 -17.76530 -17.01652 -16.67931 -15.82312 -15.72034 -15.16910 -14.99220 -14.86155 -14.54627 -14.27070 -13.95691 -13.66859 -13.55719 -13.26133 -13.18486 -12.95333 -12.76707 -12.55774 -12.28533 -12.21095 -12.16295 -11.97283 -11.36006 -11.24830 -11.13319 -10.99597 -10.67380 -10.66994 -10.48190 -10.43311 -10.39486 -10.03561 -10.00431 -9.51676 -9.35197 -8.89834 -8.32918 -7.69843 -7.13841 -6.75338 -4.99209 1.60024 2.40127 2.49640 2.90155 2.93524 2.96250 3.12636 3.69962 4.14788 4.17473 4.27515 4.49229 4.59897 4.70770 4.74610 4.77110 5.01831 5.23332 5.30896 5.34618 5.39858 5.57883 5.60891 5.62992 5.72475 5.75654 5.79783 5.87402 5.92239 6.02364 6.18031 6.29529 6.32268 6.37078 6.41828 6.61351 6.75595 6.84389 7.09129 7.24187 7.30321 7.35188 7.49328 7.56515 7.61355 7.69041 7.94249 8.11614 8.52749 8.91797 8.98274 10.04466 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.004265 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.095273 B = 6564.124194 C = 7824.891323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.144 4.144 4 C 0.067 3.933 5 H 0.083 0.917 6 C 0.047 3.953 7 O -0.556 6.556 8 O -0.136 6.136 9 N -0.590 5.590 10 C 0.607 3.393 11 O -0.538 6.538 12 C 0.000 4.000 13 C -0.154 4.154 14 C -0.130 4.130 15 C -0.077 4.077 16 C -0.160 4.160 17 C -0.128 4.128 18 C -0.087 4.087 19 C 0.083 3.917 20 N -0.280 5.280 21 C -0.455 4.455 22 H 0.094 0.906 23 C 0.030 3.970 24 N -0.831 5.831 25 Si 1.075 2.925 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.275 1.275 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.375 0.625 39 H 0.418 0.582 40 H 0.139 0.861 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 6.595 -4.478 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.202 4.202 4 C 0.008 3.992 5 H 0.101 0.899 6 C -0.031 4.031 7 O -0.361 6.361 8 O -0.139 6.139 9 N -0.301 5.301 10 C 0.396 3.604 11 O -0.414 6.414 12 C -0.114 4.114 13 C -0.182 4.182 14 C -0.135 4.135 15 C -0.096 4.096 16 C -0.179 4.179 17 C -0.149 4.149 18 C -0.107 4.107 19 C -0.030 4.030 20 N 0.053 4.947 21 C -0.582 4.582 22 H 0.112 0.888 23 C -0.186 4.186 24 N -0.459 5.459 25 Si 0.897 3.103 26 H -0.191 1.191 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.221 0.779 39 H 0.270 0.730 40 H 0.157 0.843 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.437 7.755 -4.507 9.606 hybrid contribution 1.295 -0.778 -0.253 1.532 sum 4.732 6.977 -4.761 9.682 Atomic orbital electron populations 1.21847 0.94421 1.02942 1.01499 1.20951 0.96377 0.95285 0.97100 1.21858 1.01224 0.94882 1.02205 1.22747 0.91979 0.84223 1.00277 0.89941 1.22846 0.95447 0.97402 0.87440 1.86563 1.26175 1.85089 1.38259 1.90549 1.79959 1.23705 1.19727 1.48514 1.66886 1.08579 1.06084 1.17116 0.77337 0.79137 0.86825 1.90756 1.47448 1.66161 1.37049 1.20111 1.11578 0.93370 0.86324 1.20479 1.09379 0.93365 0.94948 1.18044 1.08714 0.93232 0.93478 1.20157 1.00081 0.95961 0.93429 1.20365 1.05518 0.97254 0.94755 1.20652 1.03282 0.92262 0.98660 1.20187 1.01386 0.98338 0.90771 1.18622 1.04924 0.87864 0.91608 1.40061 1.44890 1.05649 1.04066 1.20280 1.26739 0.82947 1.28241 0.88846 1.26927 0.92603 1.07652 0.91452 1.70599 1.27569 1.15781 1.31981 0.83411 0.77382 0.71283 0.78199 1.19071 1.19919 1.20072 0.92703 0.92543 0.91535 0.89152 0.92282 0.91884 0.92485 0.92389 0.93261 0.77898 0.73014 0.84314 0.87182 0.87329 0.87030 0.86291 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.05 37.16 0.34 -1.56 16 2 C -0.08 -0.99 2.52 -90.62 -0.23 -1.22 16 3 C -0.14 -1.40 8.84 37.16 0.33 -1.07 16 4 C 0.07 1.00 2.24 -26.73 -0.06 0.94 16 5 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 6 C 0.05 0.62 6.27 37.16 0.23 0.85 16 7 O -0.56 -7.43 12.75 -40.03 -0.51 -7.94 16 8 O -0.14 -2.71 10.10 -34.74 -0.35 -3.06 16 9 N -0.59 -12.61 5.85 30.31 0.18 -12.43 16 10 C 0.61 14.59 7.92 -12.76 -0.10 14.49 16 11 O -0.54 -14.03 17.26 -12.87 -0.22 -14.25 16 12 C 0.00 0.00 6.77 -82.25 -0.56 -0.55 16 13 C -0.15 -3.52 10.55 -39.02 -0.41 -3.93 16 14 C -0.13 -2.91 6.16 -106.89 -0.66 -3.56 16 15 C -0.08 -1.48 10.06 -39.51 -0.40 -1.88 16 16 C -0.16 -2.85 9.97 -39.95 -0.40 -3.24 16 17 C -0.13 -2.42 10.02 -39.49 -0.40 -2.82 16 18 C -0.09 -1.91 8.32 -39.41 -0.33 -2.24 16 19 C 0.08 1.98 5.24 -83.83 -0.44 1.54 16 20 N -0.28 -6.82 2.62 -56.08 -0.15 -6.97 16 21 C -0.46 -10.65 7.68 -15.01 -0.12 -10.76 16 22 H 0.09 2.03 6.28 -52.49 -0.33 1.70 16 23 C 0.03 0.70 5.18 -17.47 -0.09 0.61 16 24 N -0.83 -21.21 12.46 55.50 0.69 -20.52 16 25 Si 1.07 19.58 29.92 -169.99 -5.09 14.49 16 26 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 27 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 28 H -0.28 -4.62 7.11 56.52 0.40 -4.22 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 32 H 0.09 1.27 7.56 -51.93 -0.39 0.88 16 33 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.59 6.71 -51.93 -0.35 0.24 16 37 H 0.05 0.69 7.58 -51.93 -0.39 0.29 16 38 H 0.37 3.23 9.12 45.56 0.42 3.65 16 39 H 0.42 8.49 4.15 -40.82 -0.17 8.32 16 40 H 0.14 2.90 8.06 -52.48 -0.42 2.48 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.12 2.70 7.29 -52.49 -0.38 2.32 16 45 H 0.29 7.88 5.61 -40.82 -0.23 7.65 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -30.62 370.51 -8.32 -38.94 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -5.17 Total: 20.57 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.28 Total: -14.40 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.72 Total: -39.92 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.08 Total: -25.26 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.09 Total: 14.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.62 -8.32 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836898048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.294 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds