Wall clock time and date at job start Tue Mar 31 2020 16:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47004 * 2 1 4 4 C 1.52996 * 109.47094 * 119.99954 * 2 1 3 5 5 H 1.09002 * 109.47195 * 300.00152 * 4 2 1 6 6 C 1.52997 * 109.47005 * 180.02562 * 4 2 1 7 7 O 1.42902 * 109.47208 * 304.99721 * 6 4 2 8 8 O 1.42901 * 109.47226 * 60.00001 * 4 2 1 9 9 N 1.41598 * 114.00198 * 189.39745 * 8 4 2 10 10 C 1.34768 * 120.00268 * 185.02223 * 9 8 4 11 11 O 1.21674 * 119.99900 * 4.51102 * 10 9 8 12 12 C 1.46890 * 120.00433 * 184.51135 * 10 9 8 13 13 C 1.36120 * 125.44212 * 185.46465 * 12 10 9 14 14 C 1.41699 * 107.75355 * 180.24142 * 13 12 10 15 15 C 1.40019 * 133.35237 * 179.82103 * 14 13 12 16 16 C 1.36584 * 119.82887 * 179.97438 * 15 14 13 17 17 C 1.38854 * 120.60108 * 359.97438 * 16 15 14 18 18 C 1.37852 * 120.63152 * 359.97438 * 17 16 15 19 19 C 1.39087 * 119.81333 * 0.02562 * 18 17 16 20 20 N 1.37841 * 133.15884 * 180.02562 * 19 18 17 21 21 C 1.36884 * 125.61969 * 359.94604 * 20 19 18 22 22 H 1.08001 * 120.00059 * 125.85189 * 21 20 19 23 23 C 1.39010 * 120.00068 * 305.84603 * 21 20 19 24 24 N 1.31346 * 119.99991 * 3.52857 * 23 21 20 25 25 Si 1.86803 * 119.99933 * 183.24998 * 23 21 20 26 26 H 1.48501 * 109.47153 * 185.27763 * 25 23 21 27 27 H 1.48500 * 109.47358 * 305.28123 * 25 23 21 28 28 H 1.48505 * 109.46830 * 65.28254 * 25 23 21 29 29 H 1.09000 * 109.46618 * 300.00342 * 1 2 3 30 30 H 1.09003 * 109.46569 * 60.00075 * 1 2 3 31 31 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46722 * 240.00204 * 2 1 3 33 33 H 1.09003 * 109.46833 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47178 * 299.99824 * 3 2 1 35 35 H 1.09002 * 109.47555 * 59.99810 * 3 2 1 36 36 H 1.08998 * 109.47640 * 64.99972 * 6 4 2 37 37 H 1.09007 * 109.47206 * 185.00080 * 6 4 2 38 38 H 0.96704 * 113.99719 * 179.97438 * 7 6 4 39 39 H 0.97000 * 119.99538 * 5.02794 * 9 8 4 40 40 H 1.08003 * 126.12034 * 0.02562 * 13 12 10 41 41 H 1.07993 * 120.08487 * 359.93779 * 15 14 13 42 42 H 1.07994 * 119.69628 * 180.02562 * 16 15 14 43 43 H 1.07991 * 119.68420 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.08831 * 180.02562 * 18 17 16 45 45 H 0.96995 * 119.99890 * 354.19393 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 8 4.0468 -1.2897 0.0285 8 8 1.5637 -2.0685 1.2492 9 7 1.8009 -2.7632 2.4601 10 6 1.4930 -4.0716 2.5577 11 8 1.0883 -4.6758 1.5822 12 6 1.6459 -4.7684 3.8418 13 6 1.4698 -6.1033 4.0414 14 6 1.7051 -6.3698 5.4131 15 6 1.6692 -7.5372 6.1853 16 6 1.9516 -7.4776 7.5203 17 6 2.2752 -6.2683 8.1211 18 6 2.3181 -5.1058 7.3813 19 6 2.0343 -5.1415 6.0202 20 7 1.9960 -4.1737 5.0394 21 6 2.2549 -2.8422 5.2227 22 1 2.9973 -2.3476 4.6138 23 6 1.5623 -2.1265 6.1924 24 7 0.7097 -2.7422 6.9794 25 14 1.8498 -0.2904 6.3816 26 1 1.0942 0.2104 7.5578 27 1 3.2992 -0.0340 6.5785 28 1 1.3844 0.4120 5.1587 29 1 -0.3632 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 3.9330 0.3032 1.3393 37 1 3.9334 -1.3101 2.0914 38 1 5.0109 -1.3213 -0.0406 39 1 2.1849 -2.2973 3.2193 40 1 1.1960 -6.8288 3.2896 41 1 1.4183 -8.4822 5.7267 42 1 1.9237 -8.3794 8.1139 43 1 2.4963 -6.2383 9.1777 44 1 2.5712 -4.1701 7.8575 45 1 0.5002 -3.6774 6.8301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836898048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:02 Heat of formation + Delta-G solvation = -50.074343 kcal Electronic energy + Delta-G solvation = -29422.002989 eV Core-core repulsion = 25406.115258 eV Total energy + Delta-G solvation = -4015.887731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.51151 -40.50706 -39.51322 -37.81882 -37.20808 -36.06337 -35.60258 -33.18314 -32.37072 -30.75433 -29.96138 -29.56356 -27.86344 -26.69792 -25.14098 -24.02257 -22.81758 -22.14292 -21.69738 -20.95268 -20.21663 -19.14255 -18.34891 -18.21568 -17.55087 -17.06908 -16.64303 -16.55395 -16.29591 -15.94194 -15.76784 -15.50223 -15.11165 -14.89553 -14.78311 -14.63336 -14.39766 -14.17924 -13.87536 -13.66398 -13.63560 -13.25119 -13.01930 -12.75395 -12.55042 -12.48681 -12.21004 -12.14146 -12.10959 -12.00381 -11.70761 -11.61505 -11.55360 -11.32479 -11.03954 -11.02205 -10.58396 -9.99894 -9.47086 -8.86857 -8.46731 -6.82797 -0.08902 0.83901 0.91453 1.18923 1.44901 1.50873 1.70182 2.14891 2.35733 2.57582 2.74687 3.13090 3.17724 3.43599 3.54663 3.70336 3.75084 4.03144 4.04284 4.25257 4.29310 4.30269 4.36208 4.39382 4.46170 4.59075 4.64460 4.71838 4.75707 4.79829 4.92091 4.96078 4.99208 5.09138 5.15653 5.21403 5.33508 5.35023 5.36876 5.65046 5.71762 5.73361 5.78975 5.92795 5.98136 6.27145 6.40685 6.77419 6.78936 7.15648 7.21739 8.18431 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.004265 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.095273 B = 6564.124194 C = 7824.891323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C -0.138 4.138 4 C 0.049 3.951 5 H 0.090 0.910 6 C 0.050 3.950 7 O -0.576 6.576 8 O -0.157 6.157 9 N -0.580 5.580 10 C 0.601 3.399 11 O -0.571 6.571 12 C -0.030 4.030 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.079 4.079 16 C -0.150 4.150 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.061 3.939 20 N -0.296 5.296 21 C -0.465 4.465 22 H 0.104 0.896 23 C -0.004 4.004 24 N -0.860 5.860 25 Si 1.114 2.886 26 H -0.276 1.276 27 H -0.250 1.250 28 H -0.251 1.251 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.394 0.606 39 H 0.421 0.579 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.101 0.899 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 7.468 -3.800 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.195 4.195 4 C -0.009 4.009 5 H 0.107 0.893 6 C -0.028 4.028 7 O -0.384 6.384 8 O -0.161 6.161 9 N -0.289 5.289 10 C 0.391 3.609 11 O -0.451 6.451 12 C -0.143 4.143 13 C -0.186 4.186 14 C -0.154 4.154 15 C -0.098 4.098 16 C -0.169 4.169 17 C -0.132 4.132 18 C -0.137 4.137 19 C -0.053 4.053 20 N 0.037 4.963 21 C -0.591 4.591 22 H 0.121 0.879 23 C -0.214 4.214 24 N -0.489 5.489 25 Si 0.929 3.071 26 H -0.201 1.201 27 H -0.174 1.174 28 H -0.175 1.175 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.244 0.756 39 H 0.274 0.726 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.172 0.828 43 H 0.163 0.837 44 H 0.119 0.881 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.505 8.642 -3.837 10.474 hybrid contribution 1.009 -1.140 -0.435 1.583 sum 5.514 7.502 -4.273 10.244 Atomic orbital electron populations 1.21848 0.94661 1.01233 1.02906 1.20994 0.96197 0.96913 0.95108 1.21841 1.01824 0.92312 1.03519 1.23257 0.93816 0.82001 1.01794 0.89257 1.22826 0.93893 0.99269 0.86859 1.86516 1.28247 1.85387 1.38263 1.90553 1.80743 1.26188 1.18639 1.48270 1.65520 1.08076 1.07001 1.17219 0.77245 0.79868 0.86596 1.90707 1.49368 1.67020 1.38008 1.20302 1.13261 0.94162 0.86601 1.20746 1.08827 0.93295 0.95756 1.18403 1.09409 0.94205 0.93391 1.20598 0.99109 0.96043 0.94006 1.20867 1.03164 0.98367 0.94498 1.21132 1.00480 0.91542 1.00054 1.20237 1.03935 0.99046 0.90509 1.19058 1.05479 0.88416 0.92317 1.40220 1.45719 1.06130 1.04254 1.20626 1.26876 0.83164 1.28414 0.87913 1.28404 0.91349 1.11063 0.90587 1.70709 1.29700 1.14836 1.33621 0.83024 0.78662 0.66697 0.78723 1.20095 1.17356 1.17504 0.92150 0.90283 0.94770 0.90728 0.91306 0.90286 0.91482 0.88550 0.94658 0.75609 0.72586 0.83226 0.84028 0.82752 0.83729 0.88068 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.05 71.98 0.65 -3.05 16 2 C -0.07 -1.76 2.52 -10.79 -0.03 -1.79 16 3 C -0.14 -2.25 8.84 71.98 0.64 -1.62 16 4 C 0.05 1.45 2.24 30.59 0.07 1.52 16 5 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 6 C 0.05 1.23 6.27 71.98 0.45 1.68 16 7 O -0.58 -14.84 12.75 -144.39 -1.84 -16.68 16 8 O -0.16 -6.43 10.10 -16.53 -0.17 -6.59 16 9 N -0.58 -25.68 5.85 -176.25 -1.03 -26.71 16 10 C 0.60 30.30 7.92 86.51 0.68 30.98 16 11 O -0.57 -31.26 17.26 13.03 0.22 -31.04 16 12 C -0.03 -1.51 6.77 39.91 0.27 -1.24 16 13 C -0.16 -7.45 10.55 22.63 0.24 -7.21 16 14 C -0.15 -6.73 6.16 -21.34 -0.13 -6.87 16 15 C -0.08 -2.85 10.06 22.31 0.22 -2.63 16 16 C -0.15 -4.82 9.97 22.03 0.22 -4.60 16 17 C -0.11 -3.99 10.02 22.33 0.22 -3.77 16 18 C -0.12 -5.21 8.32 22.38 0.19 -5.02 16 19 C 0.06 2.95 5.24 39.06 0.20 3.15 16 20 N -0.30 -14.97 2.62 -331.35 -0.87 -15.83 16 21 C -0.46 -22.34 7.68 84.09 0.65 -21.69 16 22 H 0.10 4.56 6.28 -2.91 -0.02 4.54 16 23 C 0.00 -0.20 5.18 84.95 0.44 0.24 16 24 N -0.86 -45.27 12.46 21.67 0.27 -45.00 16 25 Si 1.11 38.69 29.92 68.60 2.05 40.74 16 26 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.25 -7.66 7.11 99.48 0.71 -6.95 16 28 H -0.25 -7.67 7.11 99.48 0.71 -6.96 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.03 1.05 7.68 -2.39 -0.02 1.03 16 32 H 0.07 2.06 7.56 -2.39 -0.02 2.04 16 33 H 0.07 1.00 6.55 -2.39 -0.02 0.99 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.64 6.71 -2.39 -0.02 1.63 16 37 H 0.04 0.97 7.58 -2.38 -0.02 0.95 16 38 H 0.39 6.28 9.12 -74.05 -0.68 5.60 16 39 H 0.42 17.61 4.15 -92.71 -0.38 17.22 16 40 H 0.15 6.46 8.06 -2.91 -0.02 6.44 16 41 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 42 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.10 4.77 7.29 -2.91 -0.02 4.75 16 45 H 0.28 15.44 5.61 -92.71 -0.52 14.92 16 Total: -1.00 -70.75 370.51 3.85 -66.89 By element: Atomic # 1 Polarization: 55.90 SS G_CDS: 0.22 Total: 56.12 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.99 Total: -21.90 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.63 Total: -87.54 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -1.78 Total: -54.31 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.05 Total: 40.74 kcal Total: -70.75 3.85 -66.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836898048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.820 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds