Wall clock time and date at job start Tue Mar 31 2020 16:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47278 * 2 1 4 4 C 1.52997 * 109.47279 * 120.00148 * 2 1 3 5 5 H 1.08999 * 109.46897 * 299.99609 * 4 2 1 6 6 C 1.52997 * 109.47016 * 59.99645 * 4 2 1 7 7 O 1.42902 * 109.47008 * 55.00605 * 6 4 2 8 8 O 1.42896 * 109.47038 * 179.97438 * 4 2 1 9 9 N 1.41608 * 113.99980 * 157.51302 * 8 4 2 10 10 C 1.34775 * 120.00025 * 184.97369 * 9 8 4 11 11 O 1.21671 * 119.99987 * 3.97650 * 10 9 8 12 12 C 1.46886 * 120.00199 * 183.97185 * 10 9 8 13 13 C 1.36118 * 125.44148 * 174.35231 * 12 10 9 14 14 C 1.41700 * 107.75205 * 179.84651 * 13 12 10 15 15 C 1.40018 * 133.35088 * 180.10835 * 14 13 12 16 16 C 1.36581 * 119.82830 * 180.33155 * 15 14 13 17 17 C 1.38855 * 120.59992 * 359.97438 * 16 15 14 18 18 C 1.37841 * 120.63546 * 0.02562 * 17 16 15 19 19 C 1.39087 * 119.81326 * 0.02562 * 18 17 16 20 20 N 1.37834 * 133.16547 * 180.02562 * 19 18 17 21 21 C 1.36892 * 125.61833 * 0.02562 * 20 19 18 22 22 H 1.07994 * 119.99966 * 134.04054 * 21 20 19 23 23 C 1.39009 * 120.00185 * 314.04490 * 21 20 19 24 24 N 1.31355 * 119.99896 * 0.27308 * 23 21 20 25 25 Si 1.86794 * 120.00401 * 180.27543 * 23 21 20 26 26 H 1.48502 * 109.47044 * 65.00406 * 25 23 21 27 27 H 1.48496 * 109.47537 * 185.00947 * 25 23 21 28 28 H 1.48505 * 109.47198 * 305.01013 * 25 23 21 29 29 H 1.08999 * 109.46837 * 300.00206 * 1 2 3 30 30 H 1.08998 * 109.47221 * 59.99745 * 1 2 3 31 31 H 1.08993 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46940 * 240.00290 * 2 1 3 33 33 H 1.08996 * 109.47071 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46945 * 300.00220 * 3 2 1 35 35 H 1.09002 * 109.46637 * 59.99975 * 3 2 1 36 36 H 1.09005 * 109.46854 * 175.00125 * 6 4 2 37 37 H 1.08996 * 109.47558 * 294.99726 * 6 4 2 38 38 H 0.96701 * 113.99744 * 180.02562 * 7 6 4 39 39 H 0.97001 * 119.99603 * 4.97606 * 9 8 4 40 40 H 1.08009 * 126.11892 * 359.96261 * 13 12 10 41 41 H 1.08000 * 120.08494 * 0.35434 * 15 14 13 42 42 H 1.07998 * 119.69944 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.68258 * 180.02562 * 17 16 15 44 44 H 1.07998 * 120.09600 * 179.97438 * 18 17 16 45 45 H 0.97003 * 120.00132 * 185.01800 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2492 7 8 1.9081 -2.8026 0.0281 8 8 3.4690 -0.7218 1.2488 9 7 4.0452 -0.8909 2.5313 10 6 5.3816 -0.8097 2.6856 11 8 6.0870 -0.5196 1.7376 12 6 5.9866 -1.0713 3.9983 13 6 7.3223 -1.1273 4.2548 14 6 7.4860 -1.3970 5.6362 15 6 8.6084 -1.5600 6.4573 16 6 8.4446 -1.8257 7.7869 17 6 7.1732 -1.9357 8.3344 18 6 6.0532 -1.7792 7.5463 19 6 6.1947 -1.5092 6.1893 20 7 5.2905 -1.3060 5.1690 21 6 3.9276 -1.3304 5.2949 22 1 3.3294 -0.5544 4.8408 23 6 3.3136 -2.3540 6.0075 24 7 4.0416 -3.2948 6.5645 25 14 1.4534 -2.3916 6.1728 26 1 0.8416 -2.5961 4.8352 27 1 1.0588 -3.5046 7.0731 28 1 0.9808 -1.1037 6.7415 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9646 -2.7028 2.0910 37 1 0.4437 -2.1650 1.3388 38 1 1.6168 -3.7221 -0.0412 39 1 3.4780 -1.0653 3.2986 40 1 8.1152 -0.9889 3.5346 41 1 9.6011 -1.4755 6.0403 42 1 9.3117 -1.9507 8.4184 43 1 7.0609 -2.1457 9.3878 44 1 5.0685 -1.8670 7.9812 45 1 3.6112 -4.0477 6.9991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836898051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:10 Heat of formation + Delta-G solvation = -26.466720 kcal Electronic energy + Delta-G solvation = -29360.167787 eV Core-core repulsion = 25345.303759 eV Total energy + Delta-G solvation = -4014.864028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.52850 -38.95947 -37.90928 -35.99004 -35.88741 -34.82095 -33.76386 -31.52181 -30.72516 -29.04520 -28.64905 -27.86399 -26.92695 -25.15805 -23.50361 -22.69351 -21.09790 -20.45552 -20.08201 -19.20090 -18.43016 -17.70103 -16.91173 -16.60747 -15.71545 -15.61197 -15.14417 -14.97515 -14.66882 -14.64360 -14.22583 -13.82568 -13.53179 -13.26069 -13.09511 -12.95299 -12.86965 -12.73367 -12.55507 -12.21683 -12.17453 -11.99784 -11.82039 -11.65844 -11.42911 -11.25418 -11.11702 -10.89439 -10.73558 -10.66501 -10.39363 -10.19529 -9.98356 -9.82245 -9.44530 -9.39770 -8.68743 -8.29280 -7.28290 -6.94294 -6.66742 -4.86562 1.80299 2.44384 2.66808 2.79419 2.81634 2.83753 3.12900 3.53871 4.17722 4.21635 4.42761 4.49244 4.62638 4.75083 4.78491 5.03157 5.04397 5.26479 5.31643 5.40049 5.51602 5.59412 5.65289 5.77972 5.79293 5.82593 5.88520 5.94037 6.03394 6.11447 6.32500 6.37206 6.39245 6.53381 6.63659 6.67097 6.85313 7.05393 7.09372 7.34673 7.36700 7.53151 7.60895 7.62093 7.83195 7.86930 8.04441 8.20935 8.56925 8.99019 9.14680 9.98997 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.004297 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.882099 B = 6514.911744 C = 7922.693600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.149 4.149 4 C 0.069 3.931 5 H 0.083 0.917 6 C 0.048 3.952 7 O -0.557 6.557 8 O -0.135 6.135 9 N -0.595 5.595 10 C 0.607 3.393 11 O -0.539 6.539 12 C -0.010 4.010 13 C -0.155 4.155 14 C -0.135 4.135 15 C -0.086 4.086 16 C -0.159 4.159 17 C -0.147 4.147 18 C -0.050 4.050 19 C 0.113 3.887 20 N -0.268 5.268 21 C -0.380 4.380 22 H 0.103 0.897 23 C 0.060 3.940 24 N -0.813 5.813 25 Si 0.922 3.078 26 H -0.266 1.266 27 H -0.271 1.271 28 H -0.260 1.260 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.375 0.625 39 H 0.418 0.582 40 H 0.136 0.864 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 1.671 -3.264 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.207 4.207 4 C 0.010 3.990 5 H 0.101 0.899 6 C -0.030 4.030 7 O -0.362 6.362 8 O -0.138 6.138 9 N -0.307 5.307 10 C 0.397 3.603 11 O -0.416 6.416 12 C -0.124 4.124 13 C -0.183 4.183 14 C -0.139 4.139 15 C -0.105 4.105 16 C -0.178 4.178 17 C -0.168 4.168 18 C -0.069 4.069 19 C -0.002 4.002 20 N 0.067 4.933 21 C -0.507 4.507 22 H 0.121 0.879 23 C -0.155 4.155 24 N -0.441 5.441 25 Si 0.745 3.255 26 H -0.190 1.190 27 H -0.196 1.196 28 H -0.185 1.185 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.221 0.779 39 H 0.270 0.730 40 H 0.153 0.847 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.137 0.863 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.705 2.302 -4.071 9.014 hybrid contribution -1.775 -1.045 0.751 2.192 sum -9.480 1.257 -3.319 10.123 Atomic orbital electron populations 1.21856 0.94203 1.02026 1.02085 1.21003 0.95375 0.96227 0.97465 1.21842 1.02523 0.94926 1.01364 1.22695 0.82196 0.94073 1.00039 0.89900 1.22839 0.98284 0.94336 0.87569 1.86540 1.81625 1.29686 1.38341 1.90565 1.18100 1.95105 1.10049 1.48639 1.06773 1.75043 1.00261 1.17194 0.79519 0.76467 0.87122 1.90747 1.61380 1.49062 1.40383 1.19841 0.91974 1.15399 0.85216 1.20394 0.93246 1.09958 0.94671 1.18029 0.93047 1.09292 0.93575 1.20055 0.96187 1.01159 0.93095 1.20288 0.96435 1.06179 0.94934 1.20602 0.92302 1.05412 0.98478 1.20142 0.98296 0.97823 0.90663 1.18251 0.87610 1.04240 0.90069 1.39905 1.04333 1.46062 1.02996 1.19419 0.79720 1.12078 1.39449 0.87948 1.25720 1.01305 0.94375 0.94078 1.69922 1.37074 1.08686 1.28402 0.86052 0.80485 0.79474 0.79462 1.19042 1.19555 1.18464 0.92618 0.91946 0.92287 0.89135 0.91426 0.92581 0.92894 0.92849 0.92634 0.77894 0.72963 0.84666 0.87653 0.87881 0.87673 0.86294 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.84 37.16 0.33 -1.08 16 2 C -0.08 -1.03 2.52 -90.62 -0.23 -1.26 16 3 C -0.15 -1.86 9.05 37.16 0.34 -1.52 16 4 C 0.07 1.04 2.18 -26.73 -0.06 0.98 16 5 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 6 C 0.05 0.66 6.40 37.16 0.24 0.90 16 7 O -0.56 -7.71 12.75 -40.14 -0.51 -8.22 16 8 O -0.14 -2.67 10.04 -34.80 -0.35 -3.01 16 9 N -0.60 -12.60 6.30 30.31 0.19 -12.41 16 10 C 0.61 14.53 7.92 -12.76 -0.10 14.43 16 11 O -0.54 -14.01 17.26 -12.88 -0.22 -14.23 16 12 C -0.01 -0.24 6.77 -82.25 -0.56 -0.79 16 13 C -0.15 -3.61 10.55 -39.02 -0.41 -4.02 16 14 C -0.13 -3.12 6.16 -106.89 -0.66 -3.78 16 15 C -0.09 -1.73 10.06 -39.51 -0.40 -2.13 16 16 C -0.16 -3.00 9.97 -39.95 -0.40 -3.40 16 17 C -0.15 -2.91 10.02 -39.50 -0.40 -3.31 16 18 C -0.05 -1.12 8.48 -39.41 -0.33 -1.46 16 19 C 0.11 2.75 6.03 -83.84 -0.51 2.25 16 20 N -0.27 -6.56 2.82 -56.08 -0.16 -6.71 16 21 C -0.38 -8.70 7.71 -15.01 -0.12 -8.82 16 22 H 0.10 2.18 6.38 -52.49 -0.34 1.84 16 23 C 0.06 1.32 5.04 -17.47 -0.09 1.23 16 24 N -0.81 -19.13 10.24 55.50 0.57 -18.56 16 25 Si 0.92 16.27 29.56 -169.99 -5.02 11.24 16 26 H -0.27 -4.41 7.11 56.52 0.40 -4.00 16 27 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 28 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 6.55 -51.93 -0.34 0.21 16 32 H 0.09 1.28 7.56 -51.93 -0.39 0.88 16 33 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.61 6.71 -51.93 -0.35 0.26 16 38 H 0.37 3.45 9.12 45.56 0.42 3.86 16 39 H 0.42 8.42 4.32 -40.82 -0.18 8.25 16 40 H 0.14 2.91 8.06 -52.48 -0.42 2.49 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.12 2.74 6.58 -52.49 -0.35 2.39 16 45 H 0.29 6.26 8.31 -40.82 -0.34 5.92 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -29.77 372.17 -8.52 -38.29 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -5.28 Total: 19.79 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.35 Total: -11.78 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.60 Total: -37.69 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.08 Total: -25.47 kcal Atomic # 14 Polarization: 16.27 SS G_CDS: -5.02 Total: 11.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.77 -8.52 -38.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836898051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.828 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds