Wall clock time and date at job start Tue Mar 31 2020 16:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47278 * 2 1 4 4 C 1.52997 * 109.47279 * 120.00148 * 2 1 3 5 5 H 1.08999 * 109.46897 * 299.99609 * 4 2 1 6 6 C 1.52997 * 109.47016 * 59.99645 * 4 2 1 7 7 O 1.42902 * 109.47008 * 55.00605 * 6 4 2 8 8 O 1.42896 * 109.47038 * 179.97438 * 4 2 1 9 9 N 1.41608 * 113.99980 * 157.51302 * 8 4 2 10 10 C 1.34775 * 120.00025 * 184.97369 * 9 8 4 11 11 O 1.21671 * 119.99987 * 3.97650 * 10 9 8 12 12 C 1.46886 * 120.00199 * 183.97185 * 10 9 8 13 13 C 1.36118 * 125.44148 * 174.35231 * 12 10 9 14 14 C 1.41700 * 107.75205 * 179.84651 * 13 12 10 15 15 C 1.40018 * 133.35088 * 180.10835 * 14 13 12 16 16 C 1.36581 * 119.82830 * 180.33155 * 15 14 13 17 17 C 1.38855 * 120.59992 * 359.97438 * 16 15 14 18 18 C 1.37841 * 120.63546 * 0.02562 * 17 16 15 19 19 C 1.39087 * 119.81326 * 0.02562 * 18 17 16 20 20 N 1.37834 * 133.16547 * 180.02562 * 19 18 17 21 21 C 1.36892 * 125.61833 * 0.02562 * 20 19 18 22 22 H 1.07994 * 119.99966 * 134.04054 * 21 20 19 23 23 C 1.39009 * 120.00185 * 314.04490 * 21 20 19 24 24 N 1.31355 * 119.99896 * 0.27308 * 23 21 20 25 25 Si 1.86794 * 120.00401 * 180.27543 * 23 21 20 26 26 H 1.48502 * 109.47044 * 65.00406 * 25 23 21 27 27 H 1.48496 * 109.47537 * 185.00947 * 25 23 21 28 28 H 1.48505 * 109.47198 * 305.01013 * 25 23 21 29 29 H 1.08999 * 109.46837 * 300.00206 * 1 2 3 30 30 H 1.08998 * 109.47221 * 59.99745 * 1 2 3 31 31 H 1.08993 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46940 * 240.00290 * 2 1 3 33 33 H 1.08996 * 109.47071 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46945 * 300.00220 * 3 2 1 35 35 H 1.09002 * 109.46637 * 59.99975 * 3 2 1 36 36 H 1.09005 * 109.46854 * 175.00125 * 6 4 2 37 37 H 1.08996 * 109.47558 * 294.99726 * 6 4 2 38 38 H 0.96701 * 113.99744 * 180.02562 * 7 6 4 39 39 H 0.97001 * 119.99603 * 4.97606 * 9 8 4 40 40 H 1.08009 * 126.11892 * 359.96261 * 13 12 10 41 41 H 1.08000 * 120.08494 * 0.35434 * 15 14 13 42 42 H 1.07998 * 119.69944 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.68258 * 180.02562 * 17 16 15 44 44 H 1.07998 * 120.09600 * 179.97438 * 18 17 16 45 45 H 0.97003 * 120.00132 * 185.01800 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2492 7 8 1.9081 -2.8026 0.0281 8 8 3.4690 -0.7218 1.2488 9 7 4.0452 -0.8909 2.5313 10 6 5.3816 -0.8097 2.6856 11 8 6.0870 -0.5196 1.7376 12 6 5.9866 -1.0713 3.9983 13 6 7.3223 -1.1273 4.2548 14 6 7.4860 -1.3970 5.6362 15 6 8.6084 -1.5600 6.4573 16 6 8.4446 -1.8257 7.7869 17 6 7.1732 -1.9357 8.3344 18 6 6.0532 -1.7792 7.5463 19 6 6.1947 -1.5092 6.1893 20 7 5.2905 -1.3060 5.1690 21 6 3.9276 -1.3304 5.2949 22 1 3.3294 -0.5544 4.8408 23 6 3.3136 -2.3540 6.0075 24 7 4.0416 -3.2948 6.5645 25 14 1.4534 -2.3916 6.1728 26 1 0.8416 -2.5961 4.8352 27 1 1.0588 -3.5046 7.0731 28 1 0.9808 -1.1037 6.7415 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9646 -2.7028 2.0910 37 1 0.4437 -2.1650 1.3388 38 1 1.6168 -3.7221 -0.0412 39 1 3.4780 -1.0653 3.2986 40 1 8.1152 -0.9889 3.5346 41 1 9.6011 -1.4755 6.0403 42 1 9.3117 -1.9507 8.4184 43 1 7.0609 -2.1457 9.3878 44 1 5.0685 -1.8670 7.9812 45 1 3.6112 -4.0477 6.9991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836898051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:07 Heat of formation + Delta-G solvation = -44.080395 kcal Electronic energy + Delta-G solvation = -29360.931573 eV Core-core repulsion = 25345.303759 eV Total energy + Delta-G solvation = -4015.627814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.25812 -40.41696 -39.45254 -37.62333 -37.20817 -36.00097 -35.44804 -33.15868 -32.43374 -30.64106 -29.93018 -29.43969 -27.85062 -26.88608 -24.98416 -24.01973 -22.78211 -21.98992 -21.55338 -20.75296 -20.03098 -19.10818 -18.28253 -18.14136 -17.42917 -16.90026 -16.54104 -16.48679 -16.21756 -16.00268 -15.83017 -15.29269 -14.88472 -14.75533 -14.61385 -14.54490 -14.36068 -14.11166 -13.64247 -13.61324 -13.46654 -13.30576 -13.19697 -13.01618 -12.77348 -12.61655 -12.34905 -12.23528 -12.11244 -11.94810 -11.71184 -11.48729 -11.43077 -11.28182 -11.04811 -11.00707 -10.40512 -9.94927 -8.97005 -8.65774 -8.36305 -6.62040 0.07530 0.89056 1.11110 1.32802 1.35957 1.39278 1.46884 2.03919 2.43228 2.70230 2.76325 3.19709 3.35861 3.46743 3.56387 3.73351 3.85304 4.05343 4.22147 4.24417 4.33287 4.41952 4.44862 4.46566 4.52528 4.73467 4.74064 4.76123 4.82659 4.93145 4.96349 4.96986 5.00198 5.16618 5.17794 5.33994 5.35301 5.38247 5.45261 5.67420 5.77322 5.90125 5.97655 6.14728 6.18971 6.34142 6.53554 6.79085 6.84394 7.23220 7.41184 8.33068 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.004297 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.882099 B = 6514.911744 C = 7922.693600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.148 4.148 4 C 0.052 3.948 5 H 0.096 0.904 6 C 0.050 3.950 7 O -0.576 6.576 8 O -0.156 6.156 9 N -0.585 5.585 10 C 0.603 3.397 11 O -0.573 6.573 12 C -0.038 4.038 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.151 4.151 17 C -0.136 4.136 18 C -0.076 4.076 19 C 0.084 3.916 20 N -0.277 5.277 21 C -0.401 4.401 22 H 0.112 0.888 23 C 0.024 3.976 24 N -0.845 5.845 25 Si 0.986 3.014 26 H -0.245 1.245 27 H -0.272 1.272 28 H -0.254 1.254 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.092 0.908 38 H 0.394 0.606 39 H 0.422 0.578 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 1.539 -2.347 10.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 C -0.205 4.205 4 C -0.006 4.006 5 H 0.113 0.887 6 C -0.028 4.028 7 O -0.384 6.384 8 O -0.160 6.160 9 N -0.294 5.294 10 C 0.393 3.607 11 O -0.452 6.452 12 C -0.152 4.152 13 C -0.194 4.194 14 C -0.160 4.160 15 C -0.110 4.110 16 C -0.170 4.170 17 C -0.157 4.157 18 C -0.096 4.096 19 C -0.031 4.031 20 N 0.057 4.943 21 C -0.527 4.527 22 H 0.129 0.871 23 C -0.187 4.187 24 N -0.473 5.473 25 Si 0.804 3.196 26 H -0.169 1.169 27 H -0.196 1.196 28 H -0.177 1.177 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.243 0.757 39 H 0.275 0.725 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.124 0.876 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.347 2.159 -3.154 10.099 hybrid contribution -1.237 -1.028 0.520 1.690 sum -10.585 1.131 -2.634 10.966 Atomic orbital electron populations 1.21837 0.91217 1.02975 1.03491 1.21031 0.97586 0.95522 0.95403 1.21832 1.00389 0.95405 1.02878 1.23209 0.79716 0.95836 1.01810 0.88651 1.22822 1.00140 0.93017 0.86815 1.86499 1.82211 1.31394 1.38268 1.90569 1.21267 1.95284 1.08831 1.48400 1.06159 1.73528 1.01362 1.17243 0.80246 0.76379 0.86805 1.90699 1.62252 1.51013 1.41284 1.20058 0.92678 1.16859 0.85645 1.20623 0.93367 1.10078 0.95351 1.18392 0.93906 1.10047 0.93665 1.20464 0.96572 1.00429 0.93575 1.20758 0.97437 1.04004 0.94815 1.21049 0.91903 1.02938 0.99771 1.20216 0.98898 1.00031 0.90468 1.18713 0.88267 1.05212 0.90867 1.40120 1.04961 1.46149 1.03022 1.19848 0.79611 1.13002 1.40248 0.87116 1.26640 1.05846 0.93366 0.92880 1.70038 1.39076 1.09267 1.28909 0.85106 0.74600 0.79535 0.80331 1.16869 1.19593 1.17739 0.91431 0.90361 0.91553 0.90839 0.94731 0.90411 0.92044 0.94857 0.88969 0.75679 0.72489 0.83843 0.84821 0.83585 0.84483 0.87555 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.84 71.98 0.64 -1.63 16 2 C -0.08 -1.83 2.52 -10.79 -0.03 -1.86 16 3 C -0.15 -3.58 9.05 71.98 0.65 -2.93 16 4 C 0.05 1.54 2.18 30.59 0.07 1.60 16 5 H 0.10 2.52 8.04 -2.39 -0.02 2.51 16 6 C 0.05 1.31 6.40 71.98 0.46 1.77 16 7 O -0.58 -15.39 12.75 -144.29 -1.84 -17.22 16 8 O -0.16 -6.31 10.04 -16.50 -0.17 -6.47 16 9 N -0.58 -25.65 6.30 -176.25 -1.11 -26.76 16 10 C 0.60 30.31 7.92 86.51 0.68 31.00 16 11 O -0.57 -31.30 17.26 13.05 0.23 -31.08 16 12 C -0.04 -1.94 6.77 39.91 0.27 -1.67 16 13 C -0.17 -8.05 10.55 22.63 0.24 -7.81 16 14 C -0.16 -7.32 6.16 -21.34 -0.13 -7.45 16 15 C -0.09 -3.55 10.06 22.31 0.22 -3.33 16 16 C -0.15 -5.26 9.97 22.03 0.22 -5.04 16 17 C -0.14 -5.13 10.02 22.32 0.22 -4.90 16 18 C -0.08 -3.47 8.48 22.38 0.19 -3.28 16 19 C 0.08 4.19 6.03 39.06 0.24 4.43 16 20 N -0.28 -14.08 2.82 -331.35 -0.93 -15.01 16 21 C -0.40 -18.83 7.71 84.09 0.65 -18.18 16 22 H 0.11 4.81 6.38 -2.91 -0.02 4.79 16 23 C 0.02 1.07 5.04 84.95 0.43 1.50 16 24 N -0.84 -40.44 10.24 21.67 0.22 -40.22 16 25 Si 0.99 32.47 29.56 68.60 2.03 34.50 16 26 H -0.25 -7.22 7.11 99.48 0.71 -6.51 16 27 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 28 H -0.25 -8.03 7.11 99.48 0.71 -7.33 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.00 6.55 -2.39 -0.02 0.99 16 32 H 0.07 2.04 7.56 -2.39 -0.02 2.02 16 33 H 0.03 1.05 7.68 -2.39 -0.02 1.03 16 34 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 1.72 6.71 -2.39 -0.02 1.71 16 38 H 0.39 6.73 9.12 -74.06 -0.68 6.06 16 39 H 0.42 17.46 4.32 -92.71 -0.40 17.06 16 40 H 0.14 6.45 8.06 -2.91 -0.02 6.43 16 41 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.11 5.01 6.58 -2.91 -0.02 4.99 16 45 H 0.29 12.79 8.31 -92.71 -0.77 12.02 16 Total: -1.00 -67.80 372.17 3.40 -64.40 By element: Atomic # 1 Polarization: 55.70 SS G_CDS: -0.04 Total: 55.66 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 5.02 Total: -17.79 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -1.82 Total: -81.99 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.78 Total: -54.78 kcal Atomic # 14 Polarization: 32.47 SS G_CDS: 2.03 Total: 34.50 kcal Total: -67.80 3.40 -64.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836898051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.316 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds