Wall clock time and date at job start Tue Mar 31 2020 17:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31750 * 1 3 3 O 1.35638 * 120.00295 * 2 1 4 4 C 1.35926 * 118.00371 * 174.63144 * 3 2 1 5 5 C 1.38782 * 119.98677 * 185.90306 * 4 3 2 6 6 C 1.38041 * 120.01890 * 179.72527 * 5 4 3 7 7 C 1.38926 * 119.98206 * 0.57510 * 6 5 4 8 8 N 1.39852 * 120.01658 * 179.68133 * 7 6 5 9 9 C 1.34777 * 120.00139 * 36.64748 * 8 7 6 10 10 O 1.21383 * 119.99871 * 356.89284 * 9 8 7 11 11 C 1.49332 * 119.99842 * 176.88825 * 9 8 7 12 12 O 1.21362 * 119.99888 * 0.22674 * 11 9 8 13 13 N 1.34772 * 119.99826 * 180.22776 * 11 9 8 14 14 C 1.46501 * 119.99851 * 1.69641 * 13 11 9 15 15 C 1.50704 * 109.47572 * 81.87521 * 14 13 11 16 16 H 1.08000 * 119.99211 * 359.97438 * 15 14 13 17 17 C 1.37867 * 120.00187 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99943 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00113 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47055 * 90.00380 * 19 17 15 21 21 H 1.48501 * 109.47412 * 210.00332 * 19 17 15 22 22 H 1.48495 * 109.47346 * 330.00267 * 19 17 15 23 23 C 1.46501 * 120.00115 * 181.69348 * 13 11 9 24 24 C 1.52997 * 109.47157 * 122.32699 * 23 13 11 25 25 C 1.52997 * 109.47387 * 242.33029 * 23 13 11 26 26 C 1.38932 * 119.96438 * 359.70018 * 7 6 5 27 27 C 1.38037 * 119.98444 * 0.02562 * 26 7 6 28 28 H 1.07995 * 120.00406 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99994 * 179.97438 * 2 1 3 31 31 H 1.08002 * 119.98648 * 0.02562 * 5 4 3 32 32 H 1.08002 * 120.01096 * 180.27728 * 6 5 4 33 33 H 0.97001 * 119.99322 * 216.64833 * 8 7 6 34 34 H 1.09007 * 109.46669 * 201.87308 * 14 13 11 35 35 H 1.08995 * 109.47349 * 321.87113 * 14 13 11 36 36 H 0.96997 * 119.99976 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.46751 * 2.32808 * 23 13 11 38 38 H 1.09003 * 109.47201 * 60.00385 * 24 23 13 39 39 H 1.08999 * 109.46826 * 180.02562 * 24 23 13 40 40 H 1.08997 * 109.47191 * 300.00674 * 24 23 13 41 41 H 1.09000 * 109.47064 * 59.99336 * 25 23 13 42 42 H 1.08999 * 109.47479 * 179.97438 * 25 23 13 43 43 H 1.09009 * 109.47065 * 300.00340 * 25 23 13 44 44 H 1.07999 * 120.00706 * 179.97438 * 26 7 6 45 45 H 1.07990 * 119.99702 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9958 1.1746 0.0000 4 6 3.3496 1.1298 0.1123 5 6 4.0743 2.3065 0.2401 6 6 5.4488 2.2615 0.3599 7 6 6.1077 1.0385 0.3404 8 7 7.5008 0.9925 0.4550 9 6 8.1396 1.8620 1.2627 10 8 7.5120 2.7212 1.8469 11 6 9.6195 1.7683 1.4388 12 8 10.2475 0.9118 0.8515 13 7 10.2578 2.6349 2.2500 14 6 9.4952 3.6451 2.9878 15 6 8.9153 3.0263 4.2336 16 1 9.0964 1.9845 4.4534 17 6 8.1529 3.7897 5.0918 18 7 7.6473 3.2497 6.1792 19 14 7.8391 5.5913 4.7110 20 1 6.6027 5.7174 3.8982 21 1 7.6760 6.3445 5.9804 22 1 8.9892 6.1444 3.9517 23 6 11.7141 2.5668 2.3941 24 6 12.3286 3.9130 2.0059 25 6 12.0683 2.2445 3.8472 26 6 5.3820 -0.1386 0.2067 27 6 4.0071 -0.0923 0.0927 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8575 -0.9354 0.0004 31 1 3.5623 3.2574 0.2508 32 1 6.0123 3.1770 0.4639 33 1 8.0071 0.3347 -0.0468 34 1 10.1545 4.4680 3.2640 35 1 8.6879 4.0215 2.3595 36 1 7.1112 3.7869 6.7833 37 1 12.1074 1.7864 1.7426 38 1 11.9352 4.6934 2.6575 39 1 13.4121 3.8621 2.1127 40 1 12.0762 4.1427 0.9707 41 1 11.6304 1.2854 4.1238 42 1 13.1518 2.1933 3.9544 43 1 11.6748 3.0248 4.4988 44 1 5.8936 -1.0896 0.1910 45 1 3.4429 -1.0071 -0.0117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839524240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:33 Heat of formation + Delta-G solvation = -23.196017 kcal Electronic energy + Delta-G solvation = -28670.727502 eV Core-core repulsion = 24656.005303 eV Total energy + Delta-G solvation = -4014.722199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90373 -40.30246 -38.83405 -37.35273 -36.27665 -34.33945 -32.75799 -32.13286 -31.44247 -31.00912 -28.82417 -27.87796 -26.79541 -24.88670 -23.74107 -22.61749 -22.32771 -21.20505 -20.07828 -18.99959 -18.89998 -17.60055 -16.98303 -16.88419 -16.33301 -15.97785 -15.49782 -15.30975 -15.00340 -14.70342 -14.23731 -13.94991 -13.86102 -13.70465 -13.55238 -13.39207 -13.23659 -12.73529 -12.61088 -12.51376 -12.30606 -11.98600 -11.88472 -11.83736 -11.75356 -11.13324 -10.96697 -10.91771 -10.76123 -10.45931 -10.28331 -10.18309 -10.10962 -9.48101 -9.21506 -9.06150 -8.76315 -8.47694 -7.94593 -7.66045 -6.06109 -4.03388 1.12367 1.30617 1.97572 2.20766 2.73530 3.01919 3.31003 3.35663 3.39178 3.63674 3.89014 3.96795 4.41957 4.42551 4.71917 4.83851 4.89233 5.21552 5.26754 5.30827 5.35208 5.48203 5.49310 5.61746 5.63660 5.72217 5.93399 5.94620 6.00810 6.02436 6.17527 6.18796 6.26515 6.29812 6.33786 6.43917 6.52980 6.54493 6.84169 6.89674 7.01538 7.13937 7.42659 7.51142 7.57985 7.89239 8.20244 8.45257 8.58180 8.94972 9.54492 11.07165 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.003547 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.007322 B = 7892.029598 C = 9317.039504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.020 3.980 3 O -0.254 6.254 4 C 0.094 3.906 5 C -0.119 4.119 6 C -0.079 4.079 7 C 0.131 3.869 8 N -0.659 5.659 9 C 0.498 3.502 10 O -0.447 6.447 11 C 0.512 3.488 12 O -0.558 6.558 13 N -0.548 5.548 14 C 0.190 3.810 15 C -0.514 4.514 16 H 0.072 0.928 17 C 0.080 3.920 18 N -0.897 5.897 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.267 1.267 23 C 0.132 3.868 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.105 4.105 27 C -0.182 4.182 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.417 0.583 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.263 0.737 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 -4.631 -13.714 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.041 4.041 3 O -0.164 6.164 4 C 0.050 3.950 5 C -0.138 4.138 6 C -0.099 4.099 7 C 0.036 3.964 8 N -0.308 5.308 9 C 0.281 3.719 10 O -0.316 6.316 11 C 0.295 3.705 12 O -0.439 6.439 13 N -0.278 5.278 14 C 0.070 3.930 15 C -0.553 4.553 16 H 0.090 0.910 17 C -0.122 4.122 18 N -0.536 5.536 19 Si 0.700 3.300 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.192 1.192 23 C 0.028 3.972 24 C -0.218 4.218 25 C -0.212 4.212 26 C -0.125 4.125 27 C -0.201 4.201 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.254 0.746 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.150 0.850 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.907 -4.141 -13.360 14.523 hybrid contribution -0.095 0.314 -0.023 0.329 sum -4.002 -3.827 -13.383 14.483 Atomic orbital electron populations 1.23519 0.93330 1.03343 1.08106 1.22582 0.93418 0.88053 1.00040 1.84351 1.17340 1.31126 1.83557 1.18977 0.80969 0.94600 1.00456 1.20329 0.93027 0.96695 1.03738 1.21127 0.93338 0.97996 0.97488 1.17671 0.82889 0.93753 1.02055 1.43169 1.04774 1.37153 1.45662 1.20365 0.89422 0.82624 0.79535 1.90848 1.67027 1.31689 1.41987 1.19654 0.87498 0.82499 0.80894 1.90655 1.67766 1.35854 1.49653 1.48034 1.07125 1.31902 1.40757 1.20443 0.91868 0.87193 0.93476 1.21087 1.31608 0.98745 1.03827 0.91011 1.24724 0.94766 0.98074 0.94674 1.69886 1.34702 1.36462 1.12538 0.86911 0.79554 0.85717 0.77821 1.19771 1.21429 1.19231 1.21087 0.79518 0.98255 0.98291 1.22149 1.00451 0.97578 1.01621 1.22069 0.99885 1.03521 0.95700 1.20707 0.93076 0.97077 1.01665 1.20923 0.94778 0.96902 1.07474 0.85670 0.87627 0.85357 0.84627 0.83473 0.74591 0.95043 0.91796 0.92687 0.88946 0.91595 0.91651 0.92743 0.92369 0.92714 0.90520 0.85016 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -2.17 14.63 28.85 0.42 -1.75 16 2 C 0.02 0.20 10.00 28.85 0.29 0.49 16 3 O -0.25 -3.32 10.01 -2.89 -0.03 -3.35 16 4 C 0.09 1.27 6.66 -39.18 -0.26 1.01 16 5 C -0.12 -1.71 9.98 -39.45 -0.39 -2.10 16 6 C -0.08 -1.25 8.67 -39.40 -0.34 -1.59 16 7 C 0.13 1.98 6.26 -83.69 -0.52 1.45 16 8 N -0.66 -10.32 5.32 -10.27 -0.05 -10.37 16 9 C 0.50 9.67 7.57 -11.64 -0.09 9.59 16 10 O -0.45 -9.93 9.89 5.47 0.05 -9.87 16 11 C 0.51 10.24 7.66 -11.64 -0.09 10.15 16 12 O -0.56 -11.12 15.81 5.49 0.09 -11.03 16 13 N -0.55 -11.07 2.38 -168.02 -0.40 -11.47 16 14 C 0.19 4.32 3.08 -5.19 -0.02 4.31 16 15 C -0.51 -13.88 7.95 -34.44 -0.27 -14.15 16 16 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 18 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 19 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 23 C 0.13 2.25 3.24 -67.93 -0.22 2.03 16 24 C -0.16 -2.29 9.15 37.16 0.34 -1.95 16 25 C -0.15 -2.62 8.90 37.16 0.33 -2.29 16 26 C -0.10 -1.33 9.96 -39.40 -0.39 -1.72 16 27 C -0.18 -2.18 9.19 -39.45 -0.36 -2.54 16 28 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.11 0.97 8.06 -52.48 -0.42 0.54 16 30 H 0.13 1.02 5.58 -52.48 -0.29 0.73 16 31 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.15 2.47 6.39 -52.49 -0.34 2.13 16 33 H 0.42 5.53 8.30 -40.82 -0.34 5.20 16 34 H 0.03 0.70 5.39 -51.93 -0.28 0.42 16 35 H 0.06 1.51 4.89 -51.93 -0.25 1.25 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 37 H 0.09 1.55 6.91 -51.93 -0.36 1.20 16 38 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.46 7.35 -51.92 -0.38 1.08 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.13 1.20 5.72 -52.49 -0.30 0.90 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -32.29 372.22 -6.16 -38.45 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.85 Total: 8.77 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.68 Total: 3.09 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.32 Total: -48.18 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.11 Total: -24.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.29 -6.16 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839524240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.252 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds