Wall clock time and date at job start Tue Mar 31 2020 16:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31754 * 1 3 3 O 1.35643 * 119.99983 * 2 1 4 4 C 1.35932 * 117.99572 * 174.96993 * 3 2 1 5 5 C 1.38777 * 119.98013 * 184.96469 * 4 3 2 6 6 C 1.38041 * 120.01838 * 179.72582 * 5 4 3 7 7 C 1.38931 * 119.97907 * 0.55269 * 6 5 4 8 8 N 1.39854 * 120.01457 * 179.70539 * 7 6 5 9 9 C 1.34770 * 120.00258 * 35.13845 * 8 7 6 10 10 O 1.21392 * 120.00085 * 355.45353 * 9 8 7 11 11 C 1.49333 * 120.00029 * 175.45895 * 9 8 7 12 12 O 1.21362 * 119.99890 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00245 * 179.97438 * 11 9 8 14 14 C 1.46500 * 120.00030 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46861 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46965 * 299.99685 * 15 14 13 17 17 C 1.52998 * 109.47227 * 59.99874 * 15 14 13 18 18 C 1.50700 * 109.46987 * 179.97438 * 15 14 13 19 19 H 1.08005 * 120.00022 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00192 * 180.02562 * 18 15 14 21 21 N 1.31517 * 119.99521 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99991 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47259 * 120.00132 * 22 20 18 25 25 H 1.48504 * 109.47010 * 239.99406 * 22 20 18 26 26 C 1.38923 * 119.96783 * 359.71683 * 7 6 5 27 27 C 1.38045 * 119.98197 * 0.02562 * 26 7 6 28 28 H 1.08002 * 120.00504 * 180.02562 * 1 2 3 29 29 H 1.08008 * 119.99780 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99763 * 179.97438 * 2 1 3 31 31 H 1.08001 * 119.99510 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.01365 * 180.24898 * 6 5 4 33 33 H 0.96998 * 119.99604 * 215.13359 * 8 7 6 34 34 H 0.96997 * 119.99395 * 359.97438 * 13 11 9 35 35 H 1.09004 * 109.46942 * 299.99427 * 14 13 11 36 36 H 1.08993 * 109.47301 * 59.99579 * 14 13 11 37 37 H 1.08997 * 109.47303 * 60.00470 * 16 15 14 38 38 H 1.08995 * 109.46967 * 180.02562 * 16 15 14 39 39 H 1.08995 * 109.47144 * 299.99694 * 16 15 14 40 40 H 1.08996 * 109.47076 * 59.99832 * 17 15 14 41 41 H 1.09002 * 109.47079 * 180.02562 * 17 15 14 42 42 H 1.09006 * 109.47148 * 299.99906 * 17 15 14 43 43 H 0.96996 * 119.99503 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.01225 * 179.97438 * 26 7 6 45 45 H 1.08001 * 119.99531 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9957 1.1747 0.0000 4 6 3.3502 1.1295 0.1052 5 6 4.0771 2.3067 0.2133 6 6 5.4522 2.2615 0.3259 7 6 6.1093 1.0374 0.3195 8 7 7.5029 0.9910 0.4273 9 6 8.1497 1.8897 1.1958 10 8 7.5323 2.7891 1.7281 11 6 9.6259 1.7790 1.3923 12 8 10.2431 0.8795 0.8604 13 7 10.2728 2.6779 2.1604 14 6 11.7210 2.5696 2.3527 15 6 12.2014 3.7049 3.2590 16 6 11.8725 5.0503 2.6091 17 6 11.4982 3.6077 4.6144 18 6 13.6911 3.5931 3.4574 19 1 14.2404 2.7927 2.9840 20 6 14.3529 4.5127 4.2432 21 7 13.6840 5.4876 4.8192 22 14 16.1995 4.3745 4.4885 23 1 16.7119 3.1996 3.7387 24 1 16.8589 5.6075 3.9883 25 1 16.4957 4.2064 5.9339 26 6 5.3815 -0.1404 0.2057 27 6 4.0060 -0.0937 0.0985 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8575 -0.9353 0.0004 31 1 3.5665 3.2584 0.2133 32 1 6.0174 3.1775 0.4140 33 1 8.0040 0.3120 -0.0509 34 1 9.7795 3.3970 2.5852 35 1 11.9554 1.6109 2.8154 36 1 12.2220 2.6392 1.3872 37 1 10.7949 5.1309 2.4660 38 1 12.2151 5.8590 3.2545 39 1 12.3735 5.1195 1.6436 40 1 11.7326 2.6492 5.0774 41 1 11.8401 4.4168 5.2599 42 1 10.4206 3.6883 4.4713 43 1 14.1496 6.1347 5.3718 44 1 5.8916 -1.0923 0.2002 45 1 3.4399 -1.0092 0.0096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839579464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:16 Heat of formation + Delta-G solvation = -62.306797 kcal Electronic energy + Delta-G solvation = -27256.323249 eV Core-core repulsion = 23239.905079 eV Total energy + Delta-G solvation = -4016.418170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.22950 -41.45347 -40.20253 -38.71636 -38.22399 -35.96260 -34.95249 -32.98052 -32.76342 -32.06417 -30.06098 -27.89838 -27.58714 -27.21353 -25.44924 -24.63235 -23.28230 -22.04579 -21.10651 -20.70513 -19.92691 -19.81352 -18.45555 -17.98226 -17.44117 -17.23879 -16.85733 -16.63230 -16.45973 -16.23265 -15.88650 -15.45911 -15.21226 -14.92792 -14.78287 -14.62697 -14.37929 -14.21156 -14.04964 -13.81537 -13.54502 -13.22108 -13.13780 -12.88651 -12.71414 -12.68493 -12.55251 -12.28287 -12.11709 -11.91534 -11.50976 -11.45139 -11.29563 -10.79142 -10.66846 -10.41560 -10.18310 -10.14696 -10.08374 -8.79388 -8.01481 -6.17749 -0.14748 0.24154 0.44804 1.20629 1.39966 1.43363 1.48028 1.56890 2.02931 2.11876 2.44607 2.60890 2.68628 3.22735 3.34035 3.64422 3.74358 3.98712 4.16126 4.29824 4.33467 4.45980 4.47333 4.65068 4.67816 4.91987 4.92997 4.96318 5.03891 5.04317 5.10194 5.15695 5.17263 5.19434 5.23224 5.27436 5.47794 5.50241 5.64818 5.68222 5.72355 5.89285 6.11505 6.18839 6.31822 6.41266 6.60721 6.66133 6.84328 6.90345 7.50397 8.97925 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037036 B = 0.001880 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.836820 B =14890.563903 C =15301.256511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 O -0.271 6.271 4 C 0.097 3.903 5 C -0.134 4.134 6 C -0.094 4.094 7 C 0.093 3.907 8 N -0.629 5.629 9 C 0.514 3.486 10 O -0.519 6.519 11 C 0.503 3.497 12 O -0.546 6.546 13 N -0.679 5.679 14 C 0.143 3.857 15 C 0.048 3.952 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.524 4.524 19 H 0.052 0.948 20 C 0.026 3.974 21 N -0.901 5.901 22 Si 0.948 3.052 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.090 4.090 27 C -0.177 4.177 28 H 0.153 0.847 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.432 0.568 34 H 0.414 0.586 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.259 0.741 44 H 0.163 0.837 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.750 -12.088 -10.342 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.069 4.069 3 O -0.182 6.182 4 C 0.053 3.947 5 C -0.153 4.153 6 C -0.114 4.114 7 C 0.000 4.000 8 N -0.277 5.277 9 C 0.296 3.704 10 O -0.394 6.394 11 C 0.283 3.717 12 O -0.425 6.425 13 N -0.331 5.331 14 C 0.021 3.979 15 C 0.047 3.953 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.562 4.562 19 H 0.071 0.929 20 C -0.174 4.174 21 N -0.540 5.540 22 Si 0.775 3.225 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.109 4.109 27 C -0.196 4.196 28 H 0.170 0.830 29 H 0.116 0.884 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.272 0.728 34 H 0.252 0.748 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.180 0.820 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -22.739 -11.735 -10.204 27.549 hybrid contribution 1.315 0.264 0.327 1.380 sum -21.425 -11.471 -9.877 26.233 Atomic orbital electron populations 1.23891 0.93191 1.04379 1.05395 1.23025 0.93918 0.88040 1.01904 1.84351 1.17041 1.33011 1.83785 1.19185 0.81534 0.94941 0.99029 1.20437 0.92710 0.97674 1.04468 1.21124 0.93859 0.97863 0.98513 1.17900 0.81988 0.94827 1.05281 1.42963 1.05556 1.33213 1.45957 1.20177 0.88165 0.82643 0.79397 1.90769 1.68043 1.32816 1.47821 1.19999 0.87891 0.83081 0.80697 1.90737 1.68588 1.34086 1.49071 1.46067 1.10187 1.29396 1.47420 1.21576 0.76811 0.99920 0.99631 1.18416 0.94573 0.90761 0.91549 1.21698 0.96962 1.00557 0.98911 1.21703 0.96332 1.00556 0.99544 1.21264 0.92735 1.12135 1.30082 0.92947 1.25494 1.01552 0.95021 0.95326 1.69934 1.36188 1.15342 1.32509 0.85662 0.81484 0.77811 0.77562 1.19566 1.20989 1.21003 1.21026 0.93284 0.97352 0.99280 1.21324 0.94722 0.97697 1.05853 0.82950 0.88403 0.82790 0.83968 0.84698 0.72779 0.74802 0.92493 0.92456 0.95102 0.91890 0.95692 0.95717 0.91871 0.95158 0.93095 0.81971 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.33 14.63 67.09 0.98 -1.35 16 2 C -0.01 -0.11 10.00 67.09 0.67 0.56 16 3 O -0.27 -4.96 10.01 -33.38 -0.33 -5.30 16 4 C 0.10 1.77 6.66 22.53 0.15 1.92 16 5 C -0.13 -2.72 9.98 22.35 0.22 -2.50 16 6 C -0.09 -2.12 8.69 22.39 0.19 -1.93 16 7 C 0.09 1.91 6.30 38.19 0.24 2.15 16 8 N -0.63 -13.59 5.32 -304.75 -1.62 -15.21 16 9 C 0.51 14.39 7.73 87.23 0.67 15.07 16 10 O -0.52 -16.37 13.91 -3.38 -0.05 -16.42 16 11 C 0.50 16.20 7.89 87.23 0.69 16.89 16 12 O -0.55 -19.18 16.48 -3.28 -0.05 -19.23 16 13 N -0.68 -23.57 4.95 -464.52 -2.30 -25.87 16 14 C 0.14 5.74 4.50 86.38 0.39 6.13 16 15 C 0.05 2.16 0.50 -52.93 -0.03 2.14 16 16 C -0.12 -5.51 8.08 71.98 0.58 -4.92 16 17 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 18 C -0.52 -26.80 8.01 25.60 0.21 -26.60 16 19 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 20 C 0.03 1.33 5.15 84.65 0.44 1.77 16 21 N -0.90 -47.89 9.35 21.45 0.20 -47.69 16 22 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C -0.09 -1.32 9.96 22.39 0.22 -1.09 16 27 C -0.18 -2.44 9.19 22.35 0.21 -2.23 16 28 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 29 H 0.10 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.16 0.96 5.57 -2.91 -0.02 0.95 16 31 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 32 H 0.14 3.44 6.22 -2.91 -0.02 3.42 16 33 H 0.43 7.59 8.30 -92.71 -0.77 6.82 16 34 H 0.41 14.03 5.63 -92.71 -0.52 13.51 16 35 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 38 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 39 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 42 H 0.03 1.18 6.86 -2.38 -0.02 1.16 16 43 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 44 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.17 1.17 5.71 -2.91 -0.02 1.15 16 Total: -1.00 -61.13 374.38 4.04 -57.09 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.25 Total: 27.66 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.42 Total: 1.06 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -3.72 Total: -88.77 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.44 Total: -40.95 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -61.13 4.04 -57.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839579464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.212 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds