Wall clock time and date at job start Tue Mar 31 2020 16:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46954 * 2 1 4 4 C 1.52993 * 109.47011 * 120.00148 * 2 1 3 5 5 H 1.09011 * 115.56152 * 274.31546 * 4 2 1 6 6 C 1.52994 * 117.49970 * 128.62387 * 4 2 1 7 7 C 1.53001 * 60.00346 * 252.50660 * 6 4 2 8 8 H 1.08999 * 117.49868 * 107.50685 * 7 6 4 9 9 N 1.46494 * 117.50306 * 252.51190 * 7 6 4 10 10 C 1.34774 * 120.00065 * 223.60439 * 9 7 6 11 11 O 1.21362 * 119.99859 * 0.02562 * 10 9 7 12 12 C 1.49357 * 120.00149 * 179.72041 * 10 9 7 13 13 O 1.21372 * 119.99943 * 0.27692 * 12 10 9 14 14 N 1.34772 * 119.99888 * 180.27506 * 12 10 9 15 15 C 1.39726 * 119.99862 * 174.79150 * 14 12 10 16 16 C 1.39024 * 120.04227 * 146.38342 * 15 14 12 17 17 C 1.38134 * 120.06240 * 180.02562 * 16 15 14 18 18 C 1.38177 * 120.14619 * 359.97438 * 17 16 15 19 19 C 1.38923 * 120.08052 * 0.02562 * 18 17 16 20 20 O 1.35748 * 120.02935 * 180.02562 * 19 18 17 21 21 C 1.34833 * 117.00174 * 5.90938 * 20 19 18 22 22 H 1.08001 * 119.99704 * 5.41845 * 21 20 19 23 23 C 1.38653 * 120.00349 * 185.41525 * 21 20 19 24 24 N 1.31564 * 119.99586 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00310 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47068 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47356 * 119.99916 * 25 23 21 28 28 H 1.48502 * 109.47054 * 239.99682 * 25 23 21 29 29 C 1.38755 * 119.93847 * 359.73030 * 19 18 17 30 30 H 1.08998 * 109.47090 * 300.00020 * 1 2 3 31 31 H 1.09005 * 109.46716 * 60.00155 * 1 2 3 32 32 H 1.08995 * 109.46704 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47090 * 239.99980 * 2 1 3 34 34 H 1.09001 * 109.47208 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47469 * 300.00352 * 3 2 1 36 36 H 1.09007 * 109.46802 * 59.99700 * 3 2 1 37 37 H 1.09003 * 117.50170 * 145.02308 * 6 4 2 38 38 H 1.08999 * 117.52144 * 359.97438 * 6 4 2 39 39 H 0.97001 * 120.00494 * 43.59997 * 9 7 6 40 40 H 0.97003 * 120.00444 * 354.79613 * 14 12 10 41 41 H 1.08002 * 119.96566 * 0.02562 * 16 15 14 42 42 H 1.08006 * 119.92687 * 180.02562 * 17 16 15 43 43 H 1.07998 * 119.96142 * 180.02562 * 18 17 16 44 44 H 0.97002 * 119.99503 * 180.02562 * 24 23 21 45 45 H 1.08003 * 120.07549 * 180.27662 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1270 -0.1061 2.1449 6 6 3.0742 -1.8313 1.0513 7 6 1.6358 -2.1853 1.4343 8 1 1.0066 -2.6349 0.6661 9 7 1.3953 -2.6530 2.8015 10 6 0.5845 -3.7071 3.0204 11 8 0.0541 -4.2692 2.0847 12 6 0.3443 -4.1879 4.4139 13 8 0.8752 -3.6261 5.3497 14 7 -0.4620 -5.2455 4.6322 15 6 -0.6013 -5.7631 5.9226 16 6 -1.8168 -6.3021 6.3288 17 6 -1.9551 -6.8135 7.6045 18 6 -0.8867 -6.7917 8.4805 19 6 0.3305 -6.2545 8.0809 20 8 1.3796 -6.2341 8.9421 21 6 1.2128 -6.8593 10.1250 22 1 0.3101 -7.4205 10.3166 23 6 2.2001 -6.7820 11.0955 24 7 3.2995 -6.0981 10.8622 25 14 1.9693 -7.6488 12.7340 26 1 0.6568 -8.3433 12.7460 27 1 3.0568 -8.6414 12.9264 28 1 2.0105 -6.6502 13.8324 29 6 0.4748 -5.7445 6.7985 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4426 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.8416 -1.9465 1.8168 38 1 3.3912 -2.0483 0.0313 39 1 1.8196 -2.2040 3.5495 40 1 -0.9457 -5.6474 3.8936 41 1 -2.6536 -6.3209 5.6463 42 1 -2.9002 -7.2320 7.9177 43 1 -0.9981 -7.1927 9.4771 44 1 3.9904 -6.0443 11.5410 45 1 1.4214 -5.3305 6.4840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839588573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:50 Heat of formation + Delta-G solvation = -48.847221 kcal Electronic energy + Delta-G solvation = -27098.914474 eV Core-core repulsion = 23083.079955 eV Total energy + Delta-G solvation = -4015.834519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95377 -39.60512 -38.70755 -38.05257 -36.64931 -34.94685 -34.10278 -32.33743 -32.26667 -29.67899 -28.68751 -27.52820 -25.70665 -25.15296 -23.36529 -22.62867 -21.75499 -21.25762 -20.66341 -19.97069 -18.71259 -18.11969 -17.17027 -17.03847 -16.11506 -15.86867 -15.54278 -15.16851 -15.11152 -14.65872 -14.52369 -14.32065 -14.05038 -13.78211 -13.57113 -13.46986 -13.15067 -12.98772 -12.83249 -12.60298 -12.55756 -11.86155 -11.73711 -11.69652 -11.64592 -11.59122 -11.31854 -11.15426 -11.08631 -11.03225 -10.81674 -10.45166 -10.44360 -9.92368 -9.69923 -9.28376 -9.11631 -8.84981 -7.79706 -7.24625 -6.45390 -4.04566 1.18822 2.05386 2.24699 2.30692 3.09230 3.13271 3.14869 3.19465 3.47580 3.50681 3.95825 4.22422 4.31361 4.36906 4.49960 4.54136 4.64988 4.89414 4.96551 5.09812 5.18084 5.25659 5.30374 5.35123 5.47998 5.51923 5.53213 5.57406 5.68559 5.76287 5.77121 5.92817 5.97397 6.02443 6.06441 6.11918 6.27977 6.52070 6.65654 6.92029 6.96415 7.02917 7.29688 7.39882 7.42356 7.63760 7.72114 7.98948 8.03824 8.99606 9.69660 10.72442 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002159 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.804047 B =12964.450230 C =14116.187044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.150 4.150 5 H 0.111 0.889 6 C -0.184 4.184 7 C 0.079 3.921 8 H 0.141 0.859 9 N -0.673 5.673 10 C 0.519 3.481 11 O -0.520 6.520 12 C 0.500 3.500 13 O -0.489 6.489 14 N -0.637 5.637 15 C 0.171 3.829 16 C -0.229 4.229 17 C -0.057 4.057 18 C -0.240 4.240 19 C 0.167 3.833 20 O -0.173 6.173 21 C -0.391 4.391 22 H 0.094 0.906 23 C 0.039 3.961 24 N -0.859 5.859 25 Si 0.942 3.058 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.186 4.186 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.416 0.584 40 H 0.418 0.582 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.270 0.730 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 9.398 -19.848 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.202 4.202 4 C -0.170 4.170 5 H 0.129 0.871 6 C -0.222 4.222 7 C -0.026 4.026 8 H 0.159 0.841 9 N -0.324 5.324 10 C 0.300 3.700 11 O -0.395 6.395 12 C 0.281 3.719 13 O -0.362 6.362 14 N -0.283 5.283 15 C 0.078 3.922 16 C -0.250 4.250 17 C -0.076 4.076 18 C -0.260 4.260 19 C 0.112 3.888 20 O -0.075 6.075 21 C -0.468 4.468 22 H 0.111 0.889 23 C -0.166 4.166 24 N -0.494 5.494 25 Si 0.767 3.233 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.201 1.201 29 C -0.207 4.207 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.253 0.747 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.080 0.920 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.263 9.562 -19.751 22.354 hybrid contribution -0.123 -0.377 0.893 0.977 sum -4.387 9.185 -18.857 21.429 Atomic orbital electron populations 1.21845 0.94716 1.02173 1.01846 1.20710 0.95888 0.96078 0.95653 1.21810 1.01150 0.95338 1.01909 1.22969 1.02756 0.90675 1.00559 0.87140 1.23649 0.92826 1.02183 1.03581 1.21795 0.98822 0.96975 0.85054 0.84121 1.45108 1.47178 1.31328 1.08834 1.20085 0.79648 0.80856 0.89454 1.90747 1.48841 1.55754 1.44162 1.20037 0.81106 0.81600 0.89198 1.90875 1.46939 1.54889 1.43449 1.43015 1.45080 1.30297 1.09900 1.17151 0.93832 0.97711 0.83525 1.20293 0.95404 1.11321 0.98022 1.20525 0.97588 0.96967 0.92503 1.21223 0.93576 1.09574 1.01633 1.19081 0.87595 0.92150 0.89943 1.84004 1.32478 1.65717 1.25341 1.21397 1.06019 1.29422 0.89920 0.88889 1.25322 0.94871 0.97203 0.99207 1.70065 1.06653 1.38077 1.34610 0.85629 0.78742 0.78726 0.80211 1.19043 1.20144 1.20140 1.19994 0.98927 1.09152 0.92637 0.92489 0.92590 0.92404 0.90870 0.92481 0.92541 0.92526 0.88034 0.87662 0.74697 0.74503 0.87035 0.86775 0.85263 0.92027 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.03 37.16 0.34 -0.64 16 2 C -0.06 -0.40 3.07 -90.62 -0.28 -0.68 16 3 C -0.14 -0.80 9.18 37.16 0.34 -0.46 16 4 C -0.15 -1.05 5.07 -90.62 -0.46 -1.51 16 5 H 0.11 0.78 8.11 -51.92 -0.42 0.35 16 6 C -0.18 -1.31 10.10 -26.73 -0.27 -1.58 16 7 C 0.08 0.70 5.64 -67.93 -0.38 0.32 16 8 H 0.14 1.34 6.87 -51.93 -0.36 0.98 16 9 N -0.67 -7.32 5.56 -54.27 -0.30 -7.63 16 10 C 0.52 6.96 7.89 -11.63 -0.09 6.86 16 11 O -0.52 -7.53 16.05 5.49 0.09 -7.45 16 12 C 0.50 7.92 7.62 -11.63 -0.09 7.83 16 13 O -0.49 -9.24 14.19 5.48 0.08 -9.16 16 14 N -0.64 -9.85 5.32 -10.31 -0.05 -9.91 16 15 C 0.17 3.19 6.26 -83.77 -0.52 2.67 16 16 C -0.23 -3.91 9.96 -39.33 -0.39 -4.31 16 17 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 18 C -0.24 -5.20 9.13 -39.35 -0.36 -5.56 16 19 C 0.17 4.14 6.64 -39.14 -0.26 3.88 16 20 O -0.17 -5.01 9.75 0.05 0.00 -5.01 16 21 C -0.39 -10.97 9.44 30.89 0.29 -10.68 16 22 H 0.09 2.39 5.29 -52.49 -0.28 2.11 16 23 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 24 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 25 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 29 C -0.19 -4.19 8.59 -39.19 -0.34 -4.53 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 33 H 0.07 0.42 7.90 -51.93 -0.41 0.01 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 39 H 0.42 4.27 8.30 -40.82 -0.34 3.93 16 40 H 0.42 5.30 8.30 -40.82 -0.34 4.96 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 3.04 6.45 -52.48 -0.34 2.70 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -32.81 384.12 -7.73 -40.54 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.09 Total: 10.81 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.97 Total: -8.83 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.40 Total: -42.19 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.17 Total: -21.61 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.81 -7.73 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839588573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.303 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds