Wall clock time and date at job start Tue Mar 31 2020 16:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46954 * 2 1 4 4 C 1.52993 * 109.47011 * 120.00148 * 2 1 3 5 5 H 1.09011 * 115.56152 * 274.31546 * 4 2 1 6 6 C 1.52994 * 117.49970 * 128.62387 * 4 2 1 7 7 C 1.53001 * 60.00346 * 252.50660 * 6 4 2 8 8 H 1.08999 * 117.49868 * 107.50685 * 7 6 4 9 9 N 1.46494 * 117.50306 * 252.51190 * 7 6 4 10 10 C 1.34774 * 120.00065 * 223.60439 * 9 7 6 11 11 O 1.21362 * 119.99859 * 0.02562 * 10 9 7 12 12 C 1.49357 * 120.00149 * 179.72041 * 10 9 7 13 13 O 1.21372 * 119.99943 * 0.27692 * 12 10 9 14 14 N 1.34772 * 119.99888 * 180.27506 * 12 10 9 15 15 C 1.39726 * 119.99862 * 174.79150 * 14 12 10 16 16 C 1.39024 * 120.04227 * 146.38342 * 15 14 12 17 17 C 1.38134 * 120.06240 * 180.02562 * 16 15 14 18 18 C 1.38177 * 120.14619 * 359.97438 * 17 16 15 19 19 C 1.38923 * 120.08052 * 0.02562 * 18 17 16 20 20 O 1.35748 * 120.02935 * 180.02562 * 19 18 17 21 21 C 1.34833 * 117.00174 * 5.90938 * 20 19 18 22 22 H 1.08001 * 119.99704 * 5.41845 * 21 20 19 23 23 C 1.38653 * 120.00349 * 185.41525 * 21 20 19 24 24 N 1.31564 * 119.99586 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00310 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47068 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47356 * 119.99916 * 25 23 21 28 28 H 1.48502 * 109.47054 * 239.99682 * 25 23 21 29 29 C 1.38755 * 119.93847 * 359.73030 * 19 18 17 30 30 H 1.08998 * 109.47090 * 300.00020 * 1 2 3 31 31 H 1.09005 * 109.46716 * 60.00155 * 1 2 3 32 32 H 1.08995 * 109.46704 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47090 * 239.99980 * 2 1 3 34 34 H 1.09001 * 109.47208 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47469 * 300.00352 * 3 2 1 36 36 H 1.09007 * 109.46802 * 59.99700 * 3 2 1 37 37 H 1.09003 * 117.50170 * 145.02308 * 6 4 2 38 38 H 1.08999 * 117.52144 * 359.97438 * 6 4 2 39 39 H 0.97001 * 120.00494 * 43.59997 * 9 7 6 40 40 H 0.97003 * 120.00444 * 354.79613 * 14 12 10 41 41 H 1.08002 * 119.96566 * 0.02562 * 16 15 14 42 42 H 1.08006 * 119.92687 * 180.02562 * 17 16 15 43 43 H 1.07998 * 119.96142 * 180.02562 * 18 17 16 44 44 H 0.97002 * 119.99503 * 180.02562 * 24 23 21 45 45 H 1.08003 * 120.07549 * 180.27662 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1270 -0.1061 2.1449 6 6 3.0742 -1.8313 1.0513 7 6 1.6358 -2.1853 1.4343 8 1 1.0066 -2.6349 0.6661 9 7 1.3953 -2.6530 2.8015 10 6 0.5845 -3.7071 3.0204 11 8 0.0541 -4.2692 2.0847 12 6 0.3443 -4.1879 4.4139 13 8 0.8752 -3.6261 5.3497 14 7 -0.4620 -5.2455 4.6322 15 6 -0.6013 -5.7631 5.9226 16 6 -1.8168 -6.3021 6.3288 17 6 -1.9551 -6.8135 7.6045 18 6 -0.8867 -6.7917 8.4805 19 6 0.3305 -6.2545 8.0809 20 8 1.3796 -6.2341 8.9421 21 6 1.2128 -6.8593 10.1250 22 1 0.3101 -7.4205 10.3166 23 6 2.2001 -6.7820 11.0955 24 7 3.2995 -6.0981 10.8622 25 14 1.9693 -7.6488 12.7340 26 1 0.6568 -8.3433 12.7460 27 1 3.0568 -8.6414 12.9264 28 1 2.0105 -6.6502 13.8324 29 6 0.4748 -5.7445 6.7985 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4426 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.8416 -1.9465 1.8168 38 1 3.3912 -2.0483 0.0313 39 1 1.8196 -2.2040 3.5495 40 1 -0.9457 -5.6474 3.8936 41 1 -2.6536 -6.3209 5.6463 42 1 -2.9002 -7.2320 7.9177 43 1 -0.9981 -7.1927 9.4771 44 1 3.9904 -6.0443 11.5410 45 1 1.4214 -5.3305 6.4840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839588573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:49 Heat of formation + Delta-G solvation = -71.426230 kcal Electronic energy + Delta-G solvation = -27099.893573 eV Core-core repulsion = 23083.079955 eV Total energy + Delta-G solvation = -4016.813618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20766 -40.90648 -40.09537 -39.04257 -38.30322 -36.01891 -35.26791 -34.26853 -33.10241 -31.32625 -30.29399 -28.01414 -27.43290 -26.63971 -24.10855 -23.78380 -23.19667 -22.46206 -21.70404 -20.82473 -20.14773 -19.63186 -18.88590 -18.16402 -17.18214 -17.14442 -16.96567 -16.78481 -16.11260 -16.00793 -15.76670 -15.58351 -15.40481 -15.18651 -15.06358 -14.42419 -14.32015 -14.01045 -13.82019 -13.62098 -13.53938 -13.27453 -13.14772 -13.03929 -12.75335 -12.70200 -12.41321 -12.39635 -12.18436 -12.08300 -11.90438 -11.60440 -11.45629 -11.36729 -11.05882 -10.80097 -10.75516 -9.93343 -9.42960 -8.94915 -8.47267 -6.16501 -0.10133 0.58759 0.67880 1.07554 1.35875 1.44651 1.55076 1.92551 2.16503 2.38920 2.79458 2.82087 3.12287 3.16888 3.52758 3.60592 3.72060 3.91493 4.08933 4.09845 4.33295 4.36507 4.36732 4.41567 4.56862 4.61203 4.67406 4.69435 4.84034 4.89189 4.92344 4.98496 5.06167 5.10275 5.15707 5.18925 5.26996 5.27236 5.32602 5.43369 5.51060 5.59437 5.69896 5.80085 6.01596 6.10594 6.18870 6.58741 6.77155 6.96740 7.77560 8.76499 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002159 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.804047 B =12964.450230 C =14116.187044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.137 4.137 5 H 0.111 0.889 6 C -0.173 4.173 7 C 0.057 3.943 8 H 0.137 0.863 9 N -0.662 5.662 10 C 0.526 3.474 11 O -0.530 6.530 12 C 0.499 3.501 13 O -0.524 6.524 14 N -0.626 5.626 15 C 0.176 3.824 16 C -0.199 4.199 17 C -0.046 4.046 18 C -0.248 4.248 19 C 0.129 3.871 20 O -0.232 6.232 21 C -0.412 4.412 22 H 0.108 0.892 23 C -0.027 4.027 24 N -0.923 5.923 25 Si 1.023 2.977 26 H -0.246 1.246 27 H -0.269 1.269 28 H -0.270 1.270 29 C -0.208 4.208 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.418 0.582 40 H 0.435 0.565 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.127 0.873 44 H 0.272 0.728 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 9.057 -21.502 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.201 4.201 4 C -0.156 4.156 5 H 0.129 0.871 6 C -0.211 4.211 7 C -0.047 4.047 8 H 0.155 0.845 9 N -0.312 5.312 10 C 0.306 3.694 11 O -0.407 6.407 12 C 0.281 3.719 13 O -0.399 6.399 14 N -0.274 5.274 15 C 0.083 3.917 16 C -0.220 4.220 17 C -0.064 4.064 18 C -0.268 4.268 19 C 0.077 3.923 20 O -0.138 6.138 21 C -0.488 4.488 22 H 0.125 0.875 23 C -0.224 4.224 24 N -0.561 5.561 25 Si 0.842 3.158 26 H -0.170 1.170 27 H -0.194 1.194 28 H -0.195 1.195 29 C -0.230 4.230 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.256 0.744 40 H 0.275 0.725 41 H 0.181 0.819 42 H 0.181 0.819 43 H 0.144 0.856 44 H 0.081 0.919 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.027 9.231 -21.493 24.424 hybrid contribution 0.534 -0.180 1.071 1.210 sum -6.493 9.051 -20.422 23.262 Atomic orbital electron populations 1.21835 0.95042 1.01611 1.02027 1.20737 0.95567 0.96500 0.95367 1.21796 1.01335 0.94778 1.02146 1.23017 1.01840 0.89731 1.01051 0.87095 1.23728 0.91726 1.01308 1.04384 1.21976 1.00439 0.98692 0.83617 0.84531 1.45145 1.45869 1.30163 1.10051 1.19541 0.80387 0.81557 0.87879 1.90745 1.49766 1.56409 1.43769 1.20572 0.80092 0.81174 0.90039 1.90874 1.48066 1.56037 1.44911 1.42945 1.45137 1.30076 1.09247 1.17279 0.93413 0.96931 0.84125 1.20911 0.95502 1.07317 0.98238 1.21052 0.98064 0.95415 0.91881 1.21388 0.93546 1.09361 1.02467 1.19600 0.88414 0.93970 0.90276 1.83967 1.35059 1.68218 1.26578 1.21938 1.06802 1.29950 0.90090 0.87512 1.26696 0.94233 0.98007 1.03472 1.70225 1.08233 1.41175 1.36443 0.84470 0.79560 0.77507 0.74273 1.16951 1.19445 1.19492 1.20017 0.99520 1.10317 0.93122 0.93142 0.91616 0.93301 0.90030 0.92176 0.91775 0.92871 0.88083 0.86098 0.74421 0.72472 0.81935 0.81944 0.85557 0.91872 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.03 71.98 0.65 -1.09 16 2 C -0.06 -0.66 3.07 -10.79 -0.03 -0.70 16 3 C -0.14 -1.32 9.18 71.98 0.66 -0.66 16 4 C -0.14 -1.73 5.07 -10.80 -0.05 -1.79 16 5 H 0.11 1.43 8.11 -2.38 -0.02 1.41 16 6 C -0.17 -2.20 10.10 30.59 0.31 -1.89 16 7 C 0.06 0.96 5.64 44.99 0.25 1.21 16 8 H 0.14 2.45 6.87 -2.39 -0.02 2.44 16 9 N -0.66 -14.15 5.56 -443.96 -2.47 -16.62 16 10 C 0.53 13.82 7.89 87.24 0.69 14.51 16 11 O -0.53 -14.71 16.05 -3.28 -0.05 -14.76 16 12 C 0.50 15.79 7.62 87.24 0.66 16.46 16 13 O -0.52 -20.55 14.19 -3.32 -0.05 -20.59 16 14 N -0.63 -18.45 5.32 -304.89 -1.62 -20.07 16 15 C 0.18 6.35 6.26 38.20 0.24 6.59 16 16 C -0.20 -5.94 9.96 22.43 0.22 -5.71 16 17 C -0.05 -1.46 10.03 22.23 0.22 -1.24 16 18 C -0.25 -10.61 9.13 22.42 0.20 -10.41 16 19 C 0.13 6.66 6.64 22.56 0.15 6.81 16 20 O -0.23 -14.45 9.75 -22.74 -0.22 -14.68 16 21 C -0.41 -24.27 9.44 67.92 0.64 -23.63 16 22 H 0.11 5.67 5.29 -2.91 -0.02 5.65 16 23 C -0.03 -1.56 5.49 84.83 0.47 -1.09 16 24 N -0.92 -57.98 13.67 21.61 0.30 -57.69 16 25 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 26 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 29 C -0.21 -9.77 8.59 22.52 0.19 -9.57 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.66 7.29 -2.39 -0.02 0.65 16 33 H 0.08 0.75 7.90 -2.39 -0.02 0.73 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.12 1.19 8.05 -2.39 -0.02 1.17 16 39 H 0.42 8.64 8.30 -92.71 -0.77 7.87 16 40 H 0.43 9.82 8.30 -92.71 -0.77 9.05 16 41 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 42 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 43 H 0.13 5.40 5.71 -2.91 -0.02 5.38 16 44 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.10 5.24 6.45 -2.91 -0.02 5.23 16 Total: -1.00 -78.05 384.12 2.90 -75.16 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.49 Total: 36.28 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 5.48 Total: -12.21 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -3.79 Total: -94.38 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.32 Total: -50.03 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -78.05 2.90 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839588573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.730 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds