Wall clock time and date at job start Tue Mar 31 2020 17:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47509 * 2 1 4 4 N 1.46496 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.35568 * 89.99978 * 4 3 2 6 6 C 1.54474 * 105.47642 * 163.00616 * 5 4 3 7 7 H 1.09000 * 110.96912 * 267.25574 * 6 5 4 8 8 C 1.50701 * 110.96902 * 143.53455 * 6 5 4 9 9 O 1.21285 * 120.00406 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00173 * 179.97438 * 8 6 5 11 11 C 1.39918 * 120.00315 * 175.48455 * 10 8 6 12 12 C 1.38964 * 120.03442 * 35.14609 * 11 10 8 13 13 C 1.38160 * 120.06639 * 179.72142 * 12 11 10 14 14 C 1.38169 * 120.13689 * 0.51156 * 13 12 11 15 15 C 1.38907 * 120.06969 * 359.48585 * 14 13 12 16 16 O 1.35758 * 120.03166 * 180.27494 * 15 14 13 17 17 C 1.34829 * 116.99779 * 174.66421 * 16 15 14 18 18 H 1.08001 * 120.00246 * 5.03996 * 17 16 15 19 19 C 1.38659 * 119.99578 * 185.03889 * 17 16 15 20 20 N 1.31561 * 119.99886 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00239 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46725 * 90.00219 * 21 19 17 23 23 H 1.48494 * 109.47254 * 210.00139 * 21 19 17 24 24 H 1.48501 * 109.47241 * 330.00221 * 21 19 17 25 25 C 1.38718 * 120.03804 * 215.12275 * 11 10 8 26 26 C 1.54625 * 101.76432 * 25.41435 * 6 5 4 27 27 C 1.34422 * 124.34631 * 270.02445 * 4 3 2 28 28 O 1.21285 * 124.94344 * 0.34717 * 27 4 3 29 29 H 1.09001 * 109.46973 * 300.00199 * 1 2 3 30 30 H 1.09001 * 109.46878 * 59.99844 * 1 2 3 31 31 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46973 * 239.99801 * 2 1 3 33 33 H 1.09001 * 109.46878 * 120.00156 * 2 1 3 34 34 H 1.09001 * 109.47166 * 59.99918 * 3 2 1 35 35 H 1.09001 * 109.47178 * 299.99973 * 3 2 1 36 36 H 1.08995 * 110.24454 * 44.00013 * 5 4 3 37 37 H 1.09006 * 110.24033 * 282.00921 * 5 4 3 38 38 H 0.97000 * 119.99741 * 355.49140 * 10 8 6 39 39 H 1.07992 * 119.96648 * 359.95631 * 12 11 10 40 40 H 1.07993 * 119.93006 * 180.25430 * 13 12 11 41 41 H 1.07996 * 119.96279 * 179.76518 * 14 13 12 42 42 H 0.96991 * 120.00267 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.06310 * 359.97438 * 25 11 10 44 44 H 1.09004 * 110.48707 * 93.88402 * 26 6 5 45 45 H 1.09007 * 110.48420 * 216.51959 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3327 1.4425 -1.2126 6 6 5.7409 1.8775 -0.7499 7 1 5.8674 2.9559 -0.8463 8 6 6.8110 1.1414 -1.5142 9 8 6.5021 0.3315 -2.3625 10 7 8.1114 1.3831 -1.2552 11 6 9.1036 0.6332 -1.8962 12 6 8.9204 0.2149 -3.2086 13 6 9.9022 -0.5207 -3.8441 14 6 11.0642 -0.8516 -3.1740 15 6 11.2534 -0.4363 -1.8620 16 8 12.3979 -0.7572 -1.2061 17 6 12.5665 -0.2311 0.0238 18 1 11.7747 0.3466 0.4773 19 6 13.7567 -0.4319 0.7064 20 7 13.9211 0.0810 1.9068 21 14 15.1260 -1.4317 -0.0776 22 1 16.0130 -0.5306 -0.8565 23 1 15.9152 -2.1075 0.9832 24 1 14.5382 -2.4515 -0.9830 25 6 10.2715 0.3070 -1.2225 26 6 5.7301 1.4515 0.7364 27 6 4.2639 1.4417 1.1089 28 8 3.8355 1.4350 2.2435 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9380 2.1530 -1.9388 37 1 4.3697 0.4422 -1.6441 38 1 8.3594 2.0768 -0.6242 39 1 8.0113 0.4682 -3.7336 40 1 9.7592 -0.8411 -4.8655 41 1 11.8282 -1.4299 -3.6722 42 1 14.7534 -0.0597 2.3844 43 1 10.4166 0.6317 -0.2027 44 1 6.1595 0.4561 0.8511 45 1 6.2735 2.1747 1.3446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840270911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:16 Heat of formation + Delta-G solvation = -69.166767 kcal Electronic energy + Delta-G solvation = -27641.781546 eV Core-core repulsion = 23625.065906 eV Total energy + Delta-G solvation = -4016.715641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.20724 -39.96998 -38.84893 -36.90762 -36.44241 -35.11521 -34.43185 -32.41403 -31.88848 -29.56331 -28.90377 -27.98718 -26.67047 -25.28636 -23.97893 -22.13166 -21.85688 -21.67840 -20.05806 -19.68460 -18.25840 -17.87154 -17.46213 -17.06238 -16.25473 -15.81870 -15.57039 -15.37391 -15.08741 -14.86426 -14.54446 -14.17409 -13.95567 -13.89457 -13.82438 -13.79949 -13.38016 -13.16200 -13.06131 -12.51706 -12.38284 -12.23559 -12.15279 -11.96992 -11.76300 -11.71474 -11.60679 -11.32058 -11.06904 -10.96194 -10.85363 -10.34119 -10.19167 -9.98728 -9.65356 -9.52769 -9.01793 -8.89976 -7.90689 -7.38200 -6.46794 -4.14388 1.76473 2.19846 2.30997 2.56130 2.58525 3.05523 3.19682 3.23101 3.37698 3.88527 4.01372 4.19781 4.36316 4.48274 4.50409 4.59884 4.63362 4.80097 4.81642 4.89265 5.04458 5.04648 5.12261 5.23785 5.24923 5.40314 5.42806 5.55652 5.56847 5.66677 5.74324 5.84665 5.88249 5.89765 6.07027 6.11438 6.22127 6.40907 6.77398 6.78891 6.81589 7.10369 7.13573 7.45337 7.57904 7.71164 7.87987 7.96376 8.08959 8.88445 9.49938 10.60694 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.002404 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.050237 B =11642.536270 C =12672.191676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.123 4.123 7 H 0.120 0.880 8 C 0.524 3.476 9 O -0.515 6.515 10 N -0.663 5.663 11 C 0.174 3.826 12 C -0.198 4.198 13 C -0.066 4.066 14 C -0.198 4.198 15 C 0.173 3.827 16 O -0.215 6.215 17 C -0.391 4.391 18 H 0.105 0.895 19 C 0.064 3.936 20 N -0.879 5.879 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.242 4.242 26 C -0.147 4.147 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.410 0.590 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.280 0.720 43 H 0.137 0.863 44 H 0.113 0.887 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.667 5.245 -7.042 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.005 3.995 4 N -0.355 5.355 5 C -0.006 4.006 6 C -0.145 4.145 7 H 0.138 0.862 8 C 0.310 3.690 9 O -0.390 6.390 10 N -0.307 5.307 11 C 0.081 3.919 12 C -0.218 4.218 13 C -0.085 4.085 14 C -0.217 4.217 15 C 0.120 3.880 16 O -0.120 6.120 17 C -0.466 4.466 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.263 4.263 26 C -0.187 4.187 27 C 0.309 3.691 28 O -0.404 6.404 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.246 0.754 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.155 0.845 44 H 0.131 0.869 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.896 4.559 -6.877 22.466 hybrid contribution 0.824 0.057 0.247 0.862 sum -20.071 4.615 -6.630 21.636 Atomic orbital electron populations 1.21689 0.94917 1.02155 1.01911 1.21933 0.96321 0.97048 1.02964 1.21459 0.77503 0.97282 1.03210 1.48339 1.06363 1.73568 1.07182 1.21989 0.87618 1.04026 0.86927 1.22228 0.94418 1.02400 0.95456 0.86170 1.20089 0.83010 0.82658 0.83237 1.90723 1.81742 1.34266 1.32284 1.43400 1.04891 1.37496 1.44868 1.17420 0.88117 0.94946 0.91391 1.20732 1.01061 1.06439 0.93585 1.20563 0.92434 0.96873 0.98667 1.20278 0.99927 1.08367 0.93176 1.18801 0.86261 0.92060 0.90893 1.83605 1.34087 1.63806 1.30467 1.20719 1.03362 1.33361 0.89197 0.87734 1.24466 0.97589 0.96841 0.95056 1.69637 1.27215 1.43293 1.11498 0.86181 0.80856 0.80753 0.79133 1.19856 1.20781 1.18311 1.20945 0.95344 1.08233 1.01823 1.22383 0.95690 1.05975 0.94674 1.20740 0.88840 0.75075 0.84429 1.90743 1.78478 1.50173 1.21004 0.92489 0.92540 0.92313 0.91485 0.91475 0.89915 0.90220 0.89614 0.88812 0.75430 0.85622 0.86408 0.86365 0.91002 0.84545 0.86931 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.14 -1.12 6.26 -26.73 -0.17 -1.28 16 3 C 0.13 0.98 5.93 -4.05 -0.02 0.95 16 4 N -0.62 -5.73 2.93 -172.43 -0.51 -6.23 16 5 C 0.12 0.95 6.71 -3.13 -0.02 0.93 16 6 C -0.12 -1.00 3.55 -90.14 -0.32 -1.32 16 7 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 8 C 0.52 6.27 6.90 -10.98 -0.08 6.20 16 9 O -0.52 -7.81 12.94 5.55 0.07 -7.74 16 10 N -0.66 -8.55 5.33 -9.88 -0.05 -8.61 16 11 C 0.17 3.00 6.29 -83.72 -0.53 2.47 16 12 C -0.20 -3.39 8.70 -39.34 -0.34 -3.73 16 13 C -0.07 -1.12 10.03 -39.63 -0.40 -1.52 16 14 C -0.20 -3.80 9.99 -39.36 -0.39 -4.19 16 15 C 0.17 3.83 6.65 -39.14 -0.26 3.57 16 16 O -0.21 -5.48 8.58 0.03 0.00 -5.48 16 17 C -0.39 -10.61 9.95 30.89 0.31 -10.30 16 18 H 0.11 2.86 5.43 -52.49 -0.29 2.58 16 19 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 20 N -0.88 -24.72 13.96 55.48 0.77 -23.94 16 21 Si 0.91 21.20 28.62 -169.99 -4.86 16.33 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.24 -4.88 9.08 -39.21 -0.36 -5.24 16 26 C -0.15 -1.36 6.41 -26.75 -0.17 -1.53 16 27 C 0.52 6.04 8.02 -10.86 -0.09 5.95 16 28 O -0.53 -8.14 17.60 5.55 0.10 -8.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.91 6.96 -51.93 -0.36 0.55 16 38 H 0.41 4.14 8.82 -40.82 -0.36 3.78 16 39 H 0.13 2.07 6.22 -52.49 -0.33 1.75 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.14 2.83 5.63 -52.49 -0.30 2.54 16 44 H 0.11 1.16 7.89 -51.93 -0.41 0.75 16 45 H 0.11 0.88 8.14 -51.92 -0.42 0.45 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -33.04 377.76 -7.58 -40.62 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.24 Total: 5.31 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -2.56 Total: -7.92 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.22 Total: -38.78 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.17 Total: -21.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.86 Total: 16.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.04 -7.58 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840270911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.543 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds