Wall clock time and date at job start Tue Mar 31 2020 17:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47509 * 2 1 4 4 N 1.46496 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.35568 * 89.99978 * 4 3 2 6 6 C 1.54474 * 105.47642 * 163.00616 * 5 4 3 7 7 H 1.09000 * 110.96912 * 267.25574 * 6 5 4 8 8 C 1.50701 * 110.96902 * 143.53455 * 6 5 4 9 9 O 1.21285 * 120.00406 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00173 * 179.97438 * 8 6 5 11 11 C 1.39918 * 120.00315 * 175.48455 * 10 8 6 12 12 C 1.38964 * 120.03442 * 35.14609 * 11 10 8 13 13 C 1.38160 * 120.06639 * 179.72142 * 12 11 10 14 14 C 1.38169 * 120.13689 * 0.51156 * 13 12 11 15 15 C 1.38907 * 120.06969 * 359.48585 * 14 13 12 16 16 O 1.35758 * 120.03166 * 180.27494 * 15 14 13 17 17 C 1.34829 * 116.99779 * 174.66421 * 16 15 14 18 18 H 1.08001 * 120.00246 * 5.03996 * 17 16 15 19 19 C 1.38659 * 119.99578 * 185.03889 * 17 16 15 20 20 N 1.31561 * 119.99886 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00239 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46725 * 90.00219 * 21 19 17 23 23 H 1.48494 * 109.47254 * 210.00139 * 21 19 17 24 24 H 1.48501 * 109.47241 * 330.00221 * 21 19 17 25 25 C 1.38718 * 120.03804 * 215.12275 * 11 10 8 26 26 C 1.54625 * 101.76432 * 25.41435 * 6 5 4 27 27 C 1.34422 * 124.34631 * 270.02445 * 4 3 2 28 28 O 1.21285 * 124.94344 * 0.34717 * 27 4 3 29 29 H 1.09001 * 109.46973 * 300.00199 * 1 2 3 30 30 H 1.09001 * 109.46878 * 59.99844 * 1 2 3 31 31 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46973 * 239.99801 * 2 1 3 33 33 H 1.09001 * 109.46878 * 120.00156 * 2 1 3 34 34 H 1.09001 * 109.47166 * 59.99918 * 3 2 1 35 35 H 1.09001 * 109.47178 * 299.99973 * 3 2 1 36 36 H 1.08995 * 110.24454 * 44.00013 * 5 4 3 37 37 H 1.09006 * 110.24033 * 282.00921 * 5 4 3 38 38 H 0.97000 * 119.99741 * 355.49140 * 10 8 6 39 39 H 1.07992 * 119.96648 * 359.95631 * 12 11 10 40 40 H 1.07993 * 119.93006 * 180.25430 * 13 12 11 41 41 H 1.07996 * 119.96279 * 179.76518 * 14 13 12 42 42 H 0.96991 * 120.00267 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.06310 * 359.97438 * 25 11 10 44 44 H 1.09004 * 110.48707 * 93.88402 * 26 6 5 45 45 H 1.09007 * 110.48420 * 216.51959 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3327 1.4425 -1.2126 6 6 5.7409 1.8775 -0.7499 7 1 5.8674 2.9559 -0.8463 8 6 6.8110 1.1414 -1.5142 9 8 6.5021 0.3315 -2.3625 10 7 8.1114 1.3831 -1.2552 11 6 9.1036 0.6332 -1.8962 12 6 8.9204 0.2149 -3.2086 13 6 9.9022 -0.5207 -3.8441 14 6 11.0642 -0.8516 -3.1740 15 6 11.2534 -0.4363 -1.8620 16 8 12.3979 -0.7572 -1.2061 17 6 12.5665 -0.2311 0.0238 18 1 11.7747 0.3466 0.4773 19 6 13.7567 -0.4319 0.7064 20 7 13.9211 0.0810 1.9068 21 14 15.1260 -1.4317 -0.0776 22 1 16.0130 -0.5306 -0.8565 23 1 15.9152 -2.1075 0.9832 24 1 14.5382 -2.4515 -0.9830 25 6 10.2715 0.3070 -1.2225 26 6 5.7301 1.4515 0.7364 27 6 4.2639 1.4417 1.1089 28 8 3.8355 1.4350 2.2435 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9380 2.1530 -1.9388 37 1 4.3697 0.4422 -1.6441 38 1 8.3594 2.0768 -0.6242 39 1 8.0113 0.4682 -3.7336 40 1 9.7592 -0.8411 -4.8655 41 1 11.8282 -1.4299 -3.6722 42 1 14.7534 -0.0597 2.3844 43 1 10.4166 0.6317 -0.2027 44 1 6.1595 0.4561 0.8511 45 1 6.2735 2.1747 1.3446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840270911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:15 Heat of formation + Delta-G solvation = -90.442344 kcal Electronic energy + Delta-G solvation = -27642.704125 eV Core-core repulsion = 23625.065906 eV Total energy + Delta-G solvation = -4017.638219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14663 -41.17264 -40.30815 -38.30653 -37.48074 -35.84598 -35.65647 -34.38702 -32.65621 -31.02903 -30.34417 -28.80356 -27.43237 -27.09915 -24.94830 -23.39268 -22.93250 -22.73288 -21.22551 -20.51117 -19.88123 -19.37236 -18.63928 -17.89759 -17.23273 -17.11871 -16.86490 -16.50611 -16.28049 -16.02941 -15.66961 -15.61721 -15.41781 -15.05832 -14.86969 -14.69000 -14.54520 -14.36090 -14.16895 -13.93174 -13.77407 -13.28920 -13.09316 -12.86242 -12.78919 -12.71256 -12.56300 -12.50466 -12.39807 -12.22406 -12.08001 -11.68613 -11.50382 -11.27403 -11.13614 -10.86320 -10.73724 -9.79445 -9.38648 -8.93478 -8.48508 -6.20890 0.37506 0.67180 1.33726 1.36644 1.40298 1.48260 1.53771 1.77286 2.10006 2.29454 2.78853 3.05085 3.10847 3.15829 3.26694 3.64061 3.79204 3.97722 4.01784 4.05639 4.16439 4.31728 4.34399 4.44296 4.46873 4.50765 4.58895 4.62746 4.64213 4.71900 4.74566 4.84270 4.91949 4.94474 5.13150 5.15429 5.30677 5.35579 5.40509 5.48506 5.53472 5.65679 5.77963 5.90914 5.98851 6.22447 6.41094 6.86311 7.00829 7.04302 7.60137 8.62530 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.002404 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.050237 B =11642.536270 C =12672.191676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.614 5.614 5 C 0.118 3.882 6 C -0.105 4.105 7 H 0.161 0.839 8 C 0.529 3.471 9 O -0.543 6.543 10 N -0.658 5.658 11 C 0.180 3.820 12 C -0.189 4.189 13 C -0.056 4.056 14 C -0.202 4.202 15 C 0.136 3.864 16 O -0.242 6.242 17 C -0.396 4.396 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.966 3.034 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.263 1.263 25 C -0.254 4.254 26 C -0.144 4.144 27 C 0.513 3.487 28 O -0.575 6.575 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.424 0.576 39 H 0.142 0.858 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.284 0.716 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.311 6.030 -9.881 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.346 5.346 5 C -0.005 4.005 6 C -0.127 4.127 7 H 0.178 0.822 8 C 0.317 3.683 9 O -0.420 6.420 10 N -0.304 5.304 11 C 0.086 3.914 12 C -0.209 4.209 13 C -0.074 4.074 14 C -0.222 4.222 15 C 0.087 3.913 16 O -0.149 6.149 17 C -0.473 4.473 18 H 0.103 0.897 19 C -0.188 4.188 20 N -0.562 5.562 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.188 1.188 25 C -0.275 4.275 26 C -0.185 4.185 27 C 0.302 3.698 28 O -0.456 6.456 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.262 0.738 39 H 0.159 0.841 40 H 0.176 0.824 41 H 0.149 0.851 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.117 0.883 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.590 5.368 -9.759 25.187 hybrid contribution 1.014 -0.154 0.943 1.394 sum -21.576 5.214 -8.816 23.884 Atomic orbital electron populations 1.21666 0.93420 1.02473 1.02724 1.21889 0.97638 0.96900 1.01536 1.21644 0.76614 0.97320 1.04311 1.48464 1.07121 1.72040 1.06973 1.22103 0.87386 1.04243 0.86742 1.22218 0.92908 1.03998 0.93541 0.82188 1.20666 0.82890 0.82042 0.82742 1.90710 1.82068 1.35446 1.33781 1.43430 1.04648 1.37354 1.44920 1.17462 0.87906 0.94471 0.91576 1.21094 1.01401 1.05177 0.93268 1.21022 0.90901 0.95283 1.00190 1.20564 1.01261 1.08298 0.92067 1.19377 0.86028 0.93644 0.92288 1.83553 1.36044 1.65449 1.29902 1.20694 1.03148 1.33236 0.90185 0.89669 1.25232 0.99811 0.98121 0.95592 1.69716 1.28193 1.45440 1.12844 0.85269 0.78154 0.79267 0.78392 1.19016 1.19560 1.18772 1.20931 0.96494 1.08693 1.01387 1.22370 0.94398 1.05869 0.95841 1.21102 0.89916 0.74544 0.84242 1.90715 1.79369 1.52572 1.22895 0.92581 0.90788 0.92296 0.91407 0.94348 0.90870 0.86989 0.86305 0.90270 0.73788 0.84075 0.82372 0.85124 0.90658 0.86180 0.88299 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.14 -2.07 6.26 30.59 0.19 -1.88 16 3 C 0.12 1.65 5.93 86.38 0.51 2.17 16 4 N -0.61 -10.17 2.93 -818.02 -2.40 -12.57 16 5 C 0.12 1.52 6.71 86.83 0.58 2.11 16 6 C -0.11 -1.37 3.55 -10.48 -0.04 -1.41 16 7 H 0.16 0.94 8.14 -2.39 -0.02 0.93 16 8 C 0.53 11.23 6.90 87.66 0.60 11.83 16 9 O -0.54 -15.00 12.94 -3.04 -0.04 -15.04 16 10 N -0.66 -15.69 5.33 -303.56 -1.62 -17.31 16 11 C 0.18 5.95 6.29 38.14 0.24 6.19 16 12 C -0.19 -5.92 8.70 22.43 0.20 -5.73 16 13 C -0.06 -1.69 10.03 22.23 0.22 -1.47 16 14 C -0.20 -7.48 9.99 22.41 0.22 -7.26 16 15 C 0.14 6.13 6.65 22.56 0.15 6.27 16 16 O -0.24 -12.70 8.58 -22.82 -0.20 -12.90 16 17 C -0.40 -22.46 9.95 67.92 0.68 -21.78 16 18 H 0.09 4.97 5.43 -2.91 -0.02 4.96 16 19 C 0.01 0.62 5.49 84.83 0.47 1.09 16 20 N -0.92 -53.65 13.96 21.62 0.30 -53.35 16 21 Si 0.97 44.51 28.62 68.60 1.96 46.47 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.25 -10.38 9.08 22.51 0.20 -10.18 16 26 C -0.14 -2.46 6.41 30.58 0.20 -2.26 16 27 C 0.51 11.53 8.02 87.90 0.71 12.23 16 28 O -0.58 -18.10 17.60 -3.04 -0.05 -18.15 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.17 7.93 -2.39 -0.02 1.15 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.33 6.96 -2.38 -0.02 1.32 16 38 H 0.42 7.77 8.82 -92.71 -0.82 6.95 16 39 H 0.14 4.10 6.22 -2.91 -0.02 4.09 16 40 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.28 15.24 8.31 -92.72 -0.77 14.47 16 43 H 0.12 5.26 5.63 -2.91 -0.02 5.25 16 44 H 0.10 1.99 7.89 -2.38 -0.02 1.97 16 45 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -75.45 377.76 4.01 -71.44 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.21 Total: 22.32 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.85 Total: -10.90 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.72 Total: -83.24 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -0.29 Total: -46.10 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.96 Total: 46.47 kcal Total: -75.45 4.01 -71.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840270911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.006 kcal (2) G-P(sol) polarization free energy of solvation -75.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds