Wall clock time and date at job start Tue Mar 31 2020 17:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47263 * 2 1 4 4 N 1.46500 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.34923 * 90.00272 * 4 3 2 6 6 C 1.54486 * 105.47182 * 197.01088 * 5 4 3 7 7 H 1.09002 * 111.00109 * 92.71401 * 6 5 4 8 8 C 1.50694 * 110.96951 * 216.46156 * 6 5 4 9 9 O 1.21287 * 120.00541 * 353.83677 * 8 6 5 10 10 N 1.34775 * 119.99979 * 173.83018 * 8 6 5 11 11 C 1.39921 * 120.00419 * 174.80565 * 10 8 6 12 12 C 1.38970 * 120.03412 * 326.12281 * 11 10 8 13 13 C 1.38153 * 120.06779 * 179.74347 * 12 11 10 14 14 C 1.38171 * 120.13926 * 0.50471 * 13 12 11 15 15 C 1.38906 * 120.06801 * 359.77081 * 14 13 12 16 16 O 1.35754 * 120.03303 * 179.97438 * 15 14 13 17 17 C 1.34835 * 117.00200 * 185.89303 * 16 15 14 18 18 H 1.08000 * 119.99750 * 5.40648 * 17 16 15 19 19 C 1.38653 * 120.00012 * 185.40669 * 17 16 15 20 20 N 1.31553 * 119.99796 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99739 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46683 * 90.00072 * 21 19 17 23 23 H 1.48504 * 109.46811 * 209.99653 * 21 19 17 24 24 H 1.48494 * 109.47182 * 330.00182 * 21 19 17 25 25 C 1.38709 * 120.04164 * 146.39215 * 11 10 8 26 26 C 1.54627 * 101.76404 * 334.58478 * 6 5 4 27 27 C 1.34650 * 124.31394 * 269.86851 * 4 3 2 28 28 O 1.21289 * 125.07296 * 359.65638 * 27 4 3 29 29 H 1.08995 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47267 * 300.00728 * 1 2 3 31 31 H 1.09003 * 109.46443 * 60.00011 * 1 2 3 32 32 H 1.08997 * 109.47230 * 240.00020 * 2 1 3 33 33 H 1.09000 * 109.47111 * 119.99690 * 2 1 3 34 34 H 1.08997 * 109.46981 * 59.99867 * 3 2 1 35 35 H 1.09000 * 109.46804 * 299.99878 * 3 2 1 36 36 H 1.09000 * 110.25241 * 78.01179 * 5 4 3 37 37 H 1.09003 * 110.24676 * 316.00849 * 5 4 3 38 38 H 0.97003 * 120.00167 * 354.81372 * 10 8 6 39 39 H 1.08003 * 119.96129 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.93390 * 180.27479 * 13 12 11 41 41 H 1.08000 * 119.96755 * 179.74618 * 14 13 12 42 42 H 0.97006 * 120.00010 * 180.02562 * 20 19 17 43 43 H 1.08007 * 120.06681 * 0.02562 * 25 11 10 44 44 H 1.08994 * 110.48542 * 143.47798 * 26 6 5 45 45 H 1.09001 * 110.48501 * 265.98834 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.3326 1.4427 -1.2126 6 6 5.7408 1.0069 -0.7503 7 1 5.8673 -0.0714 -0.8465 8 6 6.8111 1.7429 -1.5142 9 8 6.5071 2.4686 -2.4373 10 7 8.1061 1.5950 -1.1717 11 6 9.1073 2.1906 -1.9467 12 6 8.9461 2.3059 -3.3222 13 6 9.9318 2.8987 -4.0874 14 6 11.0852 3.3692 -3.4896 15 6 11.2549 3.2518 -2.1159 16 8 12.3886 3.7139 -1.5294 17 6 12.5446 3.4603 -0.2143 18 1 11.8301 2.8381 0.3041 19 6 13.6224 3.9982 0.4724 20 7 14.4924 4.7565 -0.1591 21 14 13.8389 3.6462 2.2941 22 1 14.6588 2.4203 2.4672 23 1 14.5222 4.7944 2.9423 24 1 12.5079 3.4441 2.9208 25 6 10.2643 2.6616 -1.3438 26 6 5.7301 1.4323 0.7363 27 6 4.2646 1.4448 1.1112 28 8 3.8381 1.4532 2.2466 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 4.3700 2.4431 -1.6438 37 1 3.9377 0.7325 -1.9392 38 1 8.3442 1.0754 -0.3879 39 1 8.0475 1.9351 -3.7929 40 1 9.8023 2.9912 -5.1556 41 1 11.8558 3.8285 -4.0910 42 1 15.2466 5.1326 0.3212 43 1 10.3941 2.5689 -0.2755 44 1 6.2732 0.7086 1.3441 45 1 6.1619 2.4265 0.8517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840270912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:21 Heat of formation + Delta-G solvation = -72.319258 kcal Electronic energy + Delta-G solvation = -27588.067122 eV Core-core repulsion = 23571.214779 eV Total energy + Delta-G solvation = -4016.852343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20361 -39.92184 -38.70155 -36.85128 -36.39265 -35.14266 -34.37920 -32.30956 -31.90869 -29.45073 -28.67415 -28.00674 -26.68900 -25.36737 -23.95947 -22.17808 -21.89698 -21.62810 -20.01971 -19.73982 -18.18144 -17.92974 -17.31549 -17.13195 -16.24364 -15.76715 -15.49177 -15.29430 -15.04147 -14.89292 -14.42926 -14.30358 -14.08471 -14.02934 -13.84394 -13.65345 -13.28500 -13.15422 -13.00742 -12.54036 -12.41486 -12.26426 -11.97545 -11.83785 -11.77550 -11.66212 -11.57955 -11.21449 -11.13282 -10.99706 -10.87791 -10.49094 -10.24800 -9.97044 -9.71651 -9.48086 -9.04208 -8.85393 -7.82443 -7.23041 -6.49082 -4.09090 1.82950 2.26438 2.29601 2.55955 2.65187 3.05969 3.09718 3.10735 3.15045 3.85193 3.92345 3.97879 4.38398 4.46841 4.53604 4.55763 4.59156 4.81168 4.83685 5.00805 5.05597 5.12177 5.18923 5.22047 5.22847 5.35527 5.38294 5.54800 5.60127 5.63978 5.68054 5.81460 5.90883 5.98532 6.15617 6.18491 6.20584 6.55449 6.74389 6.86320 6.89912 7.05409 7.23631 7.35912 7.54842 7.72425 7.84218 7.94360 8.11542 8.96137 9.65579 10.68716 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002496 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.679371 B =11216.098956 C =12814.298423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.621 5.621 5 C 0.119 3.881 6 C -0.122 4.122 7 H 0.122 0.878 8 C 0.523 3.477 9 O -0.513 6.513 10 N -0.664 5.664 11 C 0.177 3.823 12 C -0.206 4.206 13 C -0.063 4.063 14 C -0.199 4.199 15 C 0.168 3.832 16 O -0.175 6.175 17 C -0.393 4.393 18 H 0.090 0.910 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.255 4.255 26 C -0.150 4.150 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.408 0.592 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.270 0.730 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.533 -10.395 -1.214 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.355 5.355 5 C -0.004 4.004 6 C -0.144 4.144 7 H 0.140 0.860 8 C 0.309 3.691 9 O -0.388 6.388 10 N -0.308 5.308 11 C 0.085 3.915 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.218 4.218 15 C 0.113 3.887 16 O -0.078 6.078 17 C -0.469 4.469 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.276 4.276 26 C -0.191 4.191 27 C 0.310 3.690 28 O -0.404 6.404 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.243 0.757 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.132 0.868 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.686 -9.618 -1.294 23.759 hybrid contribution 0.275 -0.476 1.316 1.426 sum -21.411 -10.095 0.023 23.671 Atomic orbital electron populations 1.21694 0.94895 1.02114 1.02065 1.21919 0.96366 0.97028 1.02699 1.21468 0.77554 0.97192 1.03431 1.48396 1.06354 1.73604 1.07153 1.21972 0.87602 1.03971 0.86903 1.22245 0.94486 1.02435 0.95268 0.86028 1.20072 0.82971 0.81670 0.84402 1.90751 1.81651 1.36923 1.29448 1.43435 1.05054 1.52303 1.29989 1.17384 0.87881 0.96125 0.90135 1.20508 1.01145 1.09332 0.91651 1.20530 0.92518 0.96540 0.98615 1.20269 0.99922 1.09328 0.92325 1.19089 0.86274 0.91394 0.91921 1.84025 1.32098 1.66656 1.25028 1.21260 1.11532 1.31741 0.82359 0.89229 1.25287 0.95179 0.95791 1.00222 1.70033 1.12485 1.30295 1.36697 0.85727 0.78934 0.78330 0.80516 1.19860 1.20235 1.19238 1.20820 0.95844 1.10302 1.00640 1.22411 0.95831 1.05887 0.94933 1.20781 0.88808 0.75034 0.84424 1.90742 1.78592 1.50197 1.20873 0.92337 0.92427 0.92475 0.91647 0.91534 0.89881 0.90113 0.88869 0.89579 0.75666 0.86381 0.86572 0.86341 0.91961 0.85178 0.86846 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.14 -0.94 6.26 -26.73 -0.17 -1.11 16 3 C 0.13 0.95 5.94 -4.04 -0.02 0.92 16 4 N -0.62 -5.62 2.94 -172.34 -0.51 -6.12 16 5 C 0.12 0.96 6.66 -3.12 -0.02 0.94 16 6 C -0.12 -0.99 3.55 -90.14 -0.32 -1.31 16 7 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 8 C 0.52 6.35 6.81 -10.99 -0.07 6.27 16 9 O -0.51 -8.02 13.29 5.55 0.07 -7.95 16 10 N -0.66 -8.65 5.30 -9.88 -0.05 -8.70 16 11 C 0.18 3.13 6.27 -83.72 -0.52 2.61 16 12 C -0.21 -3.66 8.65 -39.34 -0.34 -4.00 16 13 C -0.06 -1.13 10.03 -39.64 -0.40 -1.53 16 14 C -0.20 -4.11 9.99 -39.36 -0.39 -4.50 16 15 C 0.17 3.92 6.64 -39.14 -0.26 3.66 16 16 O -0.17 -4.85 9.76 0.02 0.00 -4.85 16 17 C -0.39 -10.60 9.44 30.89 0.29 -10.31 16 18 H 0.09 2.21 5.30 -52.49 -0.28 1.93 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 21 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.25 -5.23 9.04 -39.21 -0.35 -5.58 16 26 C -0.15 -1.30 6.30 -26.74 -0.17 -1.46 16 27 C 0.52 5.83 8.03 -10.76 -0.09 5.75 16 28 O -0.53 -7.89 17.60 5.55 0.10 -7.79 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.90 7.06 -51.93 -0.37 0.53 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.41 4.06 8.75 -40.82 -0.36 3.70 16 39 H 0.12 2.00 6.45 -52.48 -0.34 1.67 16 40 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.13 2.62 5.71 -52.48 -0.30 2.32 16 44 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.11 1.05 7.89 -51.93 -0.41 0.65 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -34.21 379.25 -7.75 -41.97 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.25 Total: 5.89 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.57 Total: -9.10 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.20 Total: -38.83 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.17 Total: -20.59 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.21 -7.75 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840270912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.354 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds