Wall clock time and date at job start Tue Mar 31 2020 17:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47263 * 2 1 4 4 N 1.46500 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.34923 * 90.00272 * 4 3 2 6 6 C 1.54486 * 105.47182 * 197.01088 * 5 4 3 7 7 H 1.09002 * 111.00109 * 92.71401 * 6 5 4 8 8 C 1.50694 * 110.96951 * 216.46156 * 6 5 4 9 9 O 1.21287 * 120.00541 * 353.83677 * 8 6 5 10 10 N 1.34775 * 119.99979 * 173.83018 * 8 6 5 11 11 C 1.39921 * 120.00419 * 174.80565 * 10 8 6 12 12 C 1.38970 * 120.03412 * 326.12281 * 11 10 8 13 13 C 1.38153 * 120.06779 * 179.74347 * 12 11 10 14 14 C 1.38171 * 120.13926 * 0.50471 * 13 12 11 15 15 C 1.38906 * 120.06801 * 359.77081 * 14 13 12 16 16 O 1.35754 * 120.03303 * 179.97438 * 15 14 13 17 17 C 1.34835 * 117.00200 * 185.89303 * 16 15 14 18 18 H 1.08000 * 119.99750 * 5.40648 * 17 16 15 19 19 C 1.38653 * 120.00012 * 185.40669 * 17 16 15 20 20 N 1.31553 * 119.99796 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99739 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46683 * 90.00072 * 21 19 17 23 23 H 1.48504 * 109.46811 * 209.99653 * 21 19 17 24 24 H 1.48494 * 109.47182 * 330.00182 * 21 19 17 25 25 C 1.38709 * 120.04164 * 146.39215 * 11 10 8 26 26 C 1.54627 * 101.76404 * 334.58478 * 6 5 4 27 27 C 1.34650 * 124.31394 * 269.86851 * 4 3 2 28 28 O 1.21289 * 125.07296 * 359.65638 * 27 4 3 29 29 H 1.08995 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47267 * 300.00728 * 1 2 3 31 31 H 1.09003 * 109.46443 * 60.00011 * 1 2 3 32 32 H 1.08997 * 109.47230 * 240.00020 * 2 1 3 33 33 H 1.09000 * 109.47111 * 119.99690 * 2 1 3 34 34 H 1.08997 * 109.46981 * 59.99867 * 3 2 1 35 35 H 1.09000 * 109.46804 * 299.99878 * 3 2 1 36 36 H 1.09000 * 110.25241 * 78.01179 * 5 4 3 37 37 H 1.09003 * 110.24676 * 316.00849 * 5 4 3 38 38 H 0.97003 * 120.00167 * 354.81372 * 10 8 6 39 39 H 1.08003 * 119.96129 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.93390 * 180.27479 * 13 12 11 41 41 H 1.08000 * 119.96755 * 179.74618 * 14 13 12 42 42 H 0.97006 * 120.00010 * 180.02562 * 20 19 17 43 43 H 1.08007 * 120.06681 * 0.02562 * 25 11 10 44 44 H 1.08994 * 110.48542 * 143.47798 * 26 6 5 45 45 H 1.09001 * 110.48501 * 265.98834 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.3326 1.4427 -1.2126 6 6 5.7408 1.0069 -0.7503 7 1 5.8673 -0.0714 -0.8465 8 6 6.8111 1.7429 -1.5142 9 8 6.5071 2.4686 -2.4373 10 7 8.1061 1.5950 -1.1717 11 6 9.1073 2.1906 -1.9467 12 6 8.9461 2.3059 -3.3222 13 6 9.9318 2.8987 -4.0874 14 6 11.0852 3.3692 -3.4896 15 6 11.2549 3.2518 -2.1159 16 8 12.3886 3.7139 -1.5294 17 6 12.5446 3.4603 -0.2143 18 1 11.8301 2.8381 0.3041 19 6 13.6224 3.9982 0.4724 20 7 14.4924 4.7565 -0.1591 21 14 13.8389 3.6462 2.2941 22 1 14.6588 2.4203 2.4672 23 1 14.5222 4.7944 2.9423 24 1 12.5079 3.4441 2.9208 25 6 10.2643 2.6616 -1.3438 26 6 5.7301 1.4323 0.7363 27 6 4.2646 1.4448 1.1112 28 8 3.8381 1.4532 2.2466 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 4.3700 2.4431 -1.6438 37 1 3.9377 0.7325 -1.9392 38 1 8.3442 1.0754 -0.3879 39 1 8.0475 1.9351 -3.7929 40 1 9.8023 2.9912 -5.1556 41 1 11.8558 3.8285 -4.0910 42 1 15.2466 5.1326 0.3212 43 1 10.3941 2.5689 -0.2755 44 1 6.2732 0.7086 1.3441 45 1 6.1619 2.4265 0.8517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840270912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:20 Heat of formation + Delta-G solvation = -94.926141 kcal Electronic energy + Delta-G solvation = -27589.047430 eV Core-core repulsion = 23571.214779 eV Total energy + Delta-G solvation = -4017.832651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12060 -41.10683 -40.20948 -38.22212 -37.47157 -35.83780 -35.62172 -34.21657 -32.64291 -30.94138 -30.17738 -28.78671 -27.46275 -27.15513 -24.91487 -23.49055 -22.86535 -22.72503 -21.22268 -20.51461 -19.79431 -19.30315 -18.47327 -18.02321 -17.15955 -17.05679 -16.79521 -16.48374 -16.27347 -15.86735 -15.78591 -15.54788 -15.46717 -15.04390 -14.82425 -14.68019 -14.52536 -14.41228 -13.92855 -13.72416 -13.54816 -13.23251 -13.09309 -12.86725 -12.77484 -12.65753 -12.50171 -12.47766 -12.39843 -12.20481 -12.11639 -11.66467 -11.45811 -11.29419 -11.12070 -10.80838 -10.68867 -9.78117 -9.34217 -8.85865 -8.45084 -6.13497 0.39954 0.71846 1.37377 1.42240 1.45403 1.53973 1.54327 1.77164 2.10369 2.18925 2.85330 3.08441 3.18729 3.26128 3.51445 3.65295 3.80876 3.99289 4.03364 4.07277 4.18259 4.33548 4.35691 4.46487 4.48223 4.52077 4.59946 4.65409 4.67228 4.74310 4.76945 4.86069 4.93736 5.05269 5.12696 5.14964 5.18685 5.32560 5.40063 5.47988 5.54092 5.68226 5.69803 6.00020 6.03187 6.18365 6.43467 6.99541 7.02178 7.06827 7.79836 8.77895 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002496 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.679371 B =11216.098956 C =12814.298423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.616 5.616 5 C 0.119 3.881 6 C -0.104 4.104 7 H 0.160 0.840 8 C 0.528 3.472 9 O -0.545 6.545 10 N -0.657 5.657 11 C 0.187 3.813 12 C -0.196 4.196 13 C -0.053 4.053 14 C -0.215 4.215 15 C 0.132 3.868 16 O -0.228 6.228 17 C -0.410 4.410 18 H 0.105 0.895 19 C -0.024 4.024 20 N -0.920 5.920 21 Si 1.017 2.983 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.250 1.250 25 C -0.259 4.259 26 C -0.146 4.146 27 C 0.513 3.487 28 O -0.574 6.574 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.425 0.575 39 H 0.137 0.863 40 H 0.154 0.846 41 H 0.116 0.884 42 H 0.272 0.728 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.138 -12.618 -1.523 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.348 5.348 5 C -0.004 4.004 6 C -0.125 4.125 7 H 0.178 0.822 8 C 0.316 3.684 9 O -0.422 6.422 10 N -0.303 5.303 11 C 0.093 3.907 12 C -0.217 4.217 13 C -0.071 4.071 14 C -0.235 4.235 15 C 0.081 3.919 16 O -0.135 6.135 17 C -0.486 4.486 18 H 0.122 0.878 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.836 3.164 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.174 1.174 25 C -0.281 4.281 26 C -0.186 4.186 27 C 0.302 3.698 28 O -0.454 6.454 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.263 0.737 39 H 0.155 0.845 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.362 -11.887 -1.638 27.156 hybrid contribution 0.788 0.159 1.174 1.423 sum -23.574 -11.728 -0.464 26.334 Atomic orbital electron populations 1.21686 0.93945 1.02575 1.02386 1.21843 0.97146 0.96017 1.02258 1.21628 0.76851 0.98066 1.03669 1.48525 1.07021 1.72262 1.07010 1.22057 0.87553 1.04048 0.86743 1.22215 0.92673 1.03826 0.93799 0.82217 1.20697 0.82901 0.80872 0.83924 1.90746 1.82051 1.38236 1.31139 1.43431 1.04622 1.52011 1.30193 1.17406 0.87801 0.94824 0.90678 1.20879 1.01295 1.07772 0.91735 1.20935 0.90965 0.94693 1.00531 1.20494 1.01266 1.10182 0.91569 1.19637 0.86435 0.92607 0.93259 1.83989 1.34697 1.69163 1.25613 1.21790 1.12100 1.32064 0.82631 0.87786 1.26577 0.94609 0.95466 1.05481 1.70187 1.13785 1.32857 1.38986 0.84606 0.79612 0.78305 0.73848 1.18749 1.20105 1.17388 1.20862 0.96397 1.10311 1.00524 1.22420 0.94330 1.06250 0.95607 1.21198 0.89998 0.74445 0.84154 1.90718 1.79498 1.52527 1.22693 0.91814 0.93001 0.91295 0.90423 0.93504 0.91503 0.88043 0.90306 0.86830 0.73673 0.84535 0.82871 0.86580 0.91930 0.85283 0.84550 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 71.98 0.71 -0.58 16 2 C -0.13 -1.50 6.26 30.60 0.19 -1.31 16 3 C 0.12 1.58 5.94 86.38 0.51 2.10 16 4 N -0.62 -9.73 2.94 -817.62 -2.40 -12.13 16 5 C 0.12 1.49 6.66 86.83 0.58 2.07 16 6 C -0.10 -1.24 3.55 -10.48 -0.04 -1.28 16 7 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 8 C 0.53 10.92 6.81 87.66 0.60 11.52 16 9 O -0.55 -15.30 13.29 -3.05 -0.04 -15.34 16 10 N -0.66 -15.01 5.30 -303.56 -1.61 -16.62 16 11 C 0.19 6.20 6.27 38.14 0.24 6.44 16 12 C -0.20 -6.41 8.65 22.43 0.19 -6.22 16 13 C -0.05 -1.77 10.03 22.23 0.22 -1.55 16 14 C -0.22 -8.97 9.99 22.41 0.22 -8.74 16 15 C 0.13 6.34 6.64 22.56 0.15 6.49 16 16 O -0.23 -13.33 9.76 -22.84 -0.22 -13.56 16 17 C -0.41 -22.93 9.44 67.92 0.64 -22.29 16 18 H 0.10 5.22 5.30 -2.91 -0.02 5.20 16 19 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 20 N -0.92 -55.57 13.67 21.61 0.30 -55.28 16 21 Si 1.02 41.54 29.55 68.60 2.03 43.57 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 25 C -0.26 -10.58 9.04 22.51 0.20 -10.37 16 26 C -0.15 -2.10 6.30 30.59 0.19 -1.91 16 27 C 0.51 10.65 8.03 87.86 0.71 11.36 16 28 O -0.57 -17.01 17.60 -3.06 -0.05 -17.06 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.30 7.06 -2.39 -0.02 1.28 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.42 6.95 8.75 -92.71 -0.81 6.14 16 39 H 0.14 4.07 6.45 -2.91 -0.02 4.05 16 40 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 43 H 0.13 5.19 5.71 -2.91 -0.02 5.17 16 44 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 1.73 7.89 -2.39 -0.02 1.72 16 Total: -1.00 -79.63 379.25 4.00 -75.63 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.21 Total: 25.91 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.80 Total: -15.13 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.71 Total: -84.03 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.32 Total: -45.96 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -79.63 4.00 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840270912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.293 kcal (2) G-P(sol) polarization free energy of solvation -79.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds