Wall clock time and date at job start Tue Mar 31 2020 17:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35710 * 116.99810 * 2 1 4 4 C 1.38828 * 119.84080 * 0.02562 * 3 2 1 5 5 C 1.38317 * 120.41569 * 180.27561 * 4 3 2 6 6 C 1.38763 * 119.80779 * 359.44577 * 5 4 3 7 7 C 1.41070 * 119.90706 * 0.52977 * 6 5 4 8 8 C 1.38349 * 119.88167 * 359.74570 * 7 6 5 9 9 C 1.47860 * 105.85529 * 179.74467 * 7 6 5 10 10 O 1.21448 * 125.74370 * 179.97438 * 9 7 6 11 11 N 1.34537 * 108.51718 * 0.02562 * 9 7 6 12 12 C 1.46499 * 124.44997 * 179.97438 * 11 9 7 13 13 N 1.46900 * 109.47404 * 89.99439 * 12 11 9 14 14 C 1.46899 * 110.99911 * 154.99997 * 13 12 11 15 15 C 1.50697 * 109.47018 * 284.09385 * 14 13 12 16 16 H 1.07998 * 120.00118 * 4.70096 * 15 14 13 17 17 C 1.37882 * 119.99927 * 184.70387 * 15 14 13 18 18 N 1.31514 * 119.99848 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47156 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47020 * 119.99492 * 19 17 15 22 22 H 1.48493 * 109.47153 * 239.99510 * 19 17 15 23 23 C 1.46897 * 110.99806 * 278.95430 * 13 12 11 24 24 C 1.53010 * 109.46986 * 169.13024 * 23 13 12 25 25 C 1.53004 * 109.47357 * 289.12696 * 23 13 12 26 26 C 1.34505 * 111.09311 * 359.97438 * 11 9 7 27 27 O 1.21483 * 125.66716 * 179.97438 * 26 11 9 28 28 H 1.09001 * 109.46823 * 299.99575 * 1 2 3 29 29 H 1.09000 * 109.47385 * 59.99618 * 1 2 3 30 30 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.79006 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.09684 * 179.72518 * 5 4 3 33 33 H 1.07997 * 120.16883 * 180.02562 * 8 7 6 34 34 H 1.08998 * 109.46759 * 209.99610 * 12 11 9 35 35 H 1.09005 * 109.47254 * 329.99372 * 12 11 9 36 36 H 1.09001 * 109.47202 * 44.09652 * 14 13 12 37 37 H 1.09002 * 109.46762 * 164.09263 * 14 13 12 38 38 H 0.97005 * 119.99437 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47844 * 49.13131 * 23 13 12 40 40 H 1.09001 * 109.46621 * 60.08014 * 24 23 13 41 41 H 1.08997 * 109.46874 * 180.08262 * 24 23 13 42 42 H 1.09003 * 109.46755 * 300.08002 * 24 23 13 43 43 H 1.08996 * 109.46403 * 60.00116 * 25 23 13 44 44 H 1.09003 * 109.47187 * 180.02562 * 25 23 13 45 45 H 1.08999 * 109.46688 * 300.00510 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2858 2.3714 0.0005 5 6 1.9012 3.6100 -0.0052 6 6 3.2864 3.6920 0.0001 7 6 4.0608 2.5129 0.0000 8 6 3.4365 1.2782 0.0000 9 6 5.4715 2.9560 0.0000 10 8 6.4437 2.2282 0.0004 11 7 5.4968 4.3011 0.0007 12 6 6.7202 5.1069 0.0014 13 7 7.1297 5.3769 -1.3834 14 6 7.9361 6.6020 -1.4645 15 6 7.0360 7.8047 -1.3446 16 1 5.9829 7.6732 -1.1446 17 6 7.5569 9.0730 -1.4902 18 7 8.8395 9.2331 -1.7333 19 14 6.4411 10.5637 -1.3422 20 1 5.0518 10.1168 -1.0675 21 1 6.9122 11.4261 -0.2288 22 1 6.4723 11.3334 -2.6117 23 6 7.8535 4.2316 -1.9510 24 6 8.0250 4.4328 -3.4581 25 6 9.2297 4.1203 -1.2915 26 6 4.2512 4.8087 0.0005 27 8 3.9677 5.9900 0.0015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2077 2.3079 0.0005 32 1 1.3055 4.5108 -0.0092 33 1 4.0248 0.3726 0.0003 34 1 6.5339 6.0498 0.5155 35 1 7.5131 4.5634 0.5153 36 1 8.6651 6.6115 -0.6543 37 1 8.4565 6.6317 -2.4219 38 1 9.2060 10.1254 -1.8353 39 1 7.2882 3.3177 -1.7685 40 1 8.5916 5.3459 -3.6405 41 1 8.5608 3.5823 -3.8795 42 1 7.0446 4.5135 -3.9277 43 1 9.1075 3.9770 -0.2180 44 1 9.7670 3.2707 -1.7131 45 1 9.7950 5.0342 -1.4741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844686631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:00 Heat of formation + Delta-G solvation = -37.928703 kcal Electronic energy + Delta-G solvation = -29096.637625 eV Core-core repulsion = 25081.276569 eV Total energy + Delta-G solvation = -4015.361057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13968 -40.19482 -38.35553 -37.86670 -37.03993 -35.28891 -32.75747 -31.87011 -31.40579 -30.14508 -27.88459 -27.31313 -26.50764 -25.26635 -24.67123 -22.90667 -22.39407 -21.87766 -20.00953 -18.71058 -18.41915 -17.38756 -17.08591 -16.82251 -16.30936 -16.10688 -15.94679 -15.32680 -15.01530 -14.68115 -14.52701 -14.20959 -13.98869 -13.92064 -13.68068 -13.34545 -13.27485 -12.94408 -12.76274 -12.55485 -12.30783 -11.89857 -11.73479 -11.56708 -11.51770 -11.17890 -11.05250 -10.84682 -10.60213 -10.51252 -10.32482 -10.24992 -10.07226 -9.81951 -9.53091 -9.42247 -9.12051 -8.70866 -8.39147 -7.40214 -5.98965 -3.99375 0.04504 0.76443 2.01174 2.47346 2.79547 3.20946 3.36115 3.43604 3.44141 3.53406 3.78111 4.28280 4.38325 4.48466 4.55534 4.60496 4.69142 4.78366 4.85855 5.02254 5.03268 5.36804 5.40194 5.50437 5.54727 5.61113 5.69165 5.75181 5.81175 5.84198 5.95331 6.04846 6.05648 6.16554 6.32455 6.37632 6.47499 6.77287 6.82521 6.82678 6.96348 7.19414 7.28885 7.45268 7.86915 7.93145 8.05458 8.16280 8.51663 9.11777 9.65542 11.11336 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.003545 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.178203 B = 7896.718045 C = 9287.713587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.147 3.853 4 C -0.195 4.195 5 C -0.006 4.006 6 C -0.171 4.171 7 C -0.097 4.097 8 C -0.079 4.079 9 C 0.575 3.425 10 O -0.467 6.467 11 N -0.560 5.560 12 C 0.279 3.721 13 N -0.541 5.541 14 C 0.197 3.803 15 C -0.507 4.507 16 H 0.069 0.931 17 C 0.057 3.943 18 N -0.900 5.900 19 Si 0.894 3.106 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.285 1.285 23 C 0.070 3.930 24 C -0.138 4.138 25 C -0.179 4.179 26 C 0.575 3.425 27 O -0.443 6.443 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.117 0.883 35 H 0.067 0.933 36 H -0.005 1.005 37 H 0.046 0.954 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 -18.456 4.072 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.101 3.899 4 C -0.214 4.214 5 C -0.025 4.025 6 C -0.175 4.175 7 C -0.101 4.101 8 C -0.099 4.099 9 C 0.363 3.637 10 O -0.339 6.339 11 N -0.303 5.303 12 C 0.070 3.930 13 N -0.267 5.267 14 C 0.073 3.927 15 C -0.546 4.546 16 H 0.088 0.912 17 C -0.144 4.144 18 N -0.540 5.540 19 Si 0.722 3.278 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.038 4.038 24 C -0.196 4.196 25 C -0.238 4.238 26 C 0.363 3.637 27 O -0.313 6.313 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.013 0.987 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.855 -18.090 3.759 23.707 hybrid contribution -0.032 0.878 0.409 0.969 sum -14.887 -17.212 4.168 23.135 Atomic orbital electron populations 1.23180 0.77590 1.04510 1.01824 1.86062 1.21990 1.26250 1.87884 1.19036 0.91745 0.84620 0.94513 1.21396 1.00695 0.91521 1.07753 1.20508 0.91829 0.97897 0.92250 1.20653 0.94667 0.94200 1.08002 1.20410 0.94432 0.93775 1.01449 1.19812 0.91047 0.97292 1.01703 1.18249 0.88300 0.82284 0.74865 1.90779 1.40332 1.58371 1.44406 1.46869 1.09583 1.07669 1.66146 1.22208 0.82520 0.95408 0.92906 1.62015 1.43786 1.04579 1.16292 1.19779 0.91641 0.83985 0.97342 1.21329 0.95818 0.89796 1.47627 0.91244 1.24952 0.95028 0.99062 0.95398 1.69967 1.11825 1.22481 1.49749 0.86477 0.81329 0.82519 0.77441 1.19341 1.21203 1.21150 1.21766 0.92778 0.94066 0.95217 1.21797 1.01742 1.01333 0.94700 1.22410 0.98847 1.02058 1.00470 1.18137 0.82317 0.87978 0.75288 1.90863 1.81540 1.16670 1.42198 0.92158 0.92110 0.87794 0.83906 0.83763 0.83410 0.86538 0.91505 0.98694 0.93655 0.93064 0.91153 0.91665 0.93427 0.92593 0.93216 0.93034 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.80 101.05 0.99 1.09 16 2 O -0.31 -2.51 10.48 -18.83 -0.20 -2.71 16 3 C 0.15 1.37 6.70 -38.97 -0.26 1.11 16 4 C -0.19 -1.59 9.02 -39.33 -0.35 -1.95 16 5 C -0.01 -0.06 10.08 -39.36 -0.40 -0.46 16 6 C -0.17 -2.36 6.40 -104.82 -0.67 -3.03 16 7 C -0.10 -1.31 6.40 -104.85 -0.67 -1.98 16 8 C -0.08 -0.87 10.03 -39.14 -0.39 -1.26 16 9 C 0.58 9.37 7.29 -12.43 -0.09 9.28 16 10 O -0.47 -8.23 16.11 5.41 0.09 -8.15 16 11 N -0.56 -10.04 2.83 -120.97 -0.34 -10.38 16 12 C 0.28 5.56 5.24 -63.32 -0.33 5.22 16 13 N -0.54 -11.80 4.46 -231.96 -1.04 -12.83 16 14 C 0.20 5.00 3.27 -4.98 -0.02 4.98 16 15 C -0.51 -14.32 8.53 -34.44 -0.29 -14.62 16 16 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 19 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.07 1.35 2.88 -67.71 -0.20 1.15 16 24 C -0.14 -2.51 9.18 37.16 0.34 -2.17 16 25 C -0.18 -3.20 8.54 37.16 0.32 -2.88 16 26 C 0.58 10.21 8.01 -12.57 -0.10 10.11 16 27 O -0.44 -9.34 17.68 5.38 0.10 -9.24 16 28 H 0.06 0.18 7.64 -51.93 -0.40 -0.22 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.20 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.14 0.71 6.24 -52.49 -0.33 0.38 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.12 2.52 7.08 -51.93 -0.37 2.15 16 35 H 0.07 1.25 5.99 -51.93 -0.31 0.94 16 36 H 0.00 -0.12 7.33 -51.93 -0.38 -0.51 16 37 H 0.05 1.23 5.88 -51.93 -0.31 0.92 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 39 H 0.07 1.34 5.51 -51.93 -0.29 1.06 16 40 H 0.06 1.29 6.29 -51.93 -0.33 0.96 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.88 6.48 -51.93 -0.34 0.54 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.27 6.74 -51.93 -0.35 0.92 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -33.12 370.18 -8.19 -41.31 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.87 Total: -1.07 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.22 Total: 6.12 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.64 Total: -49.10 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.02 Total: -20.09 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.12 -8.19 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844686631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.386 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds