Wall clock time and date at job start Tue Mar 31 2020 17:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35710 * 116.99810 * 2 1 4 4 C 1.38828 * 119.84080 * 0.02562 * 3 2 1 5 5 C 1.38317 * 120.41569 * 180.27561 * 4 3 2 6 6 C 1.38763 * 119.80779 * 359.44577 * 5 4 3 7 7 C 1.41070 * 119.90706 * 0.52977 * 6 5 4 8 8 C 1.38349 * 119.88167 * 359.74570 * 7 6 5 9 9 C 1.47860 * 105.85529 * 179.74467 * 7 6 5 10 10 O 1.21448 * 125.74370 * 179.97438 * 9 7 6 11 11 N 1.34537 * 108.51718 * 0.02562 * 9 7 6 12 12 C 1.46499 * 124.44997 * 179.97438 * 11 9 7 13 13 N 1.46900 * 109.47404 * 89.99439 * 12 11 9 14 14 C 1.46899 * 110.99911 * 154.99997 * 13 12 11 15 15 C 1.50697 * 109.47018 * 284.09385 * 14 13 12 16 16 H 1.07998 * 120.00118 * 4.70096 * 15 14 13 17 17 C 1.37882 * 119.99927 * 184.70387 * 15 14 13 18 18 N 1.31514 * 119.99848 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47156 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47020 * 119.99492 * 19 17 15 22 22 H 1.48493 * 109.47153 * 239.99510 * 19 17 15 23 23 C 1.46897 * 110.99806 * 278.95430 * 13 12 11 24 24 C 1.53010 * 109.46986 * 169.13024 * 23 13 12 25 25 C 1.53004 * 109.47357 * 289.12696 * 23 13 12 26 26 C 1.34505 * 111.09311 * 359.97438 * 11 9 7 27 27 O 1.21483 * 125.66716 * 179.97438 * 26 11 9 28 28 H 1.09001 * 109.46823 * 299.99575 * 1 2 3 29 29 H 1.09000 * 109.47385 * 59.99618 * 1 2 3 30 30 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.79006 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.09684 * 179.72518 * 5 4 3 33 33 H 1.07997 * 120.16883 * 180.02562 * 8 7 6 34 34 H 1.08998 * 109.46759 * 209.99610 * 12 11 9 35 35 H 1.09005 * 109.47254 * 329.99372 * 12 11 9 36 36 H 1.09001 * 109.47202 * 44.09652 * 14 13 12 37 37 H 1.09002 * 109.46762 * 164.09263 * 14 13 12 38 38 H 0.97005 * 119.99437 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47844 * 49.13131 * 23 13 12 40 40 H 1.09001 * 109.46621 * 60.08014 * 24 23 13 41 41 H 1.08997 * 109.46874 * 180.08262 * 24 23 13 42 42 H 1.09003 * 109.46755 * 300.08002 * 24 23 13 43 43 H 1.08996 * 109.46403 * 60.00116 * 25 23 13 44 44 H 1.09003 * 109.47187 * 180.02562 * 25 23 13 45 45 H 1.08999 * 109.46688 * 300.00510 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2858 2.3714 0.0005 5 6 1.9012 3.6100 -0.0052 6 6 3.2864 3.6920 0.0001 7 6 4.0608 2.5129 0.0000 8 6 3.4365 1.2782 0.0000 9 6 5.4715 2.9560 0.0000 10 8 6.4437 2.2282 0.0004 11 7 5.4968 4.3011 0.0007 12 6 6.7202 5.1069 0.0014 13 7 7.1297 5.3769 -1.3834 14 6 7.9361 6.6020 -1.4645 15 6 7.0360 7.8047 -1.3446 16 1 5.9829 7.6732 -1.1446 17 6 7.5569 9.0730 -1.4902 18 7 8.8395 9.2331 -1.7333 19 14 6.4411 10.5637 -1.3422 20 1 5.0518 10.1168 -1.0675 21 1 6.9122 11.4261 -0.2288 22 1 6.4723 11.3334 -2.6117 23 6 7.8535 4.2316 -1.9510 24 6 8.0250 4.4328 -3.4581 25 6 9.2297 4.1203 -1.2915 26 6 4.2512 4.8087 0.0005 27 8 3.9677 5.9900 0.0015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2077 2.3079 0.0005 32 1 1.3055 4.5108 -0.0092 33 1 4.0248 0.3726 0.0003 34 1 6.5339 6.0498 0.5155 35 1 7.5131 4.5634 0.5153 36 1 8.6651 6.6115 -0.6543 37 1 8.4565 6.6317 -2.4219 38 1 9.2060 10.1254 -1.8353 39 1 7.2882 3.3177 -1.7685 40 1 8.5916 5.3459 -3.6405 41 1 8.5608 3.5823 -3.8795 42 1 7.0446 4.5135 -3.9277 43 1 9.1075 3.9770 -0.2180 44 1 9.7670 3.2707 -1.7131 45 1 9.7950 5.0342 -1.4741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844686631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:59 Heat of formation + Delta-G solvation = -60.322544 kcal Electronic energy + Delta-G solvation = -29097.608695 eV Core-core repulsion = 25081.276569 eV Total energy + Delta-G solvation = -4016.332126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.36989 -40.96304 -39.74496 -39.35653 -38.11723 -36.63978 -34.90236 -33.13794 -32.34583 -31.54543 -29.12223 -28.31355 -28.06943 -26.78545 -25.84189 -24.48510 -23.87367 -22.93267 -21.18122 -20.32111 -19.33134 -18.78834 -18.52013 -18.07452 -17.78884 -16.94088 -16.75904 -16.62028 -16.58463 -16.36846 -16.02684 -15.68382 -15.14680 -15.09473 -14.95592 -14.72308 -14.30051 -14.15184 -14.09942 -13.80387 -13.64710 -13.32918 -13.27916 -12.96033 -12.86619 -12.64867 -12.40250 -12.27242 -12.17853 -12.16738 -12.10680 -11.58964 -11.52958 -11.40920 -11.36279 -10.92014 -10.58913 -10.37732 -9.51148 -9.19180 -8.20226 -6.28000 -1.01065 -0.08241 0.95377 1.24398 1.37078 1.38292 1.53987 1.88748 2.03620 2.40499 2.51216 2.81087 3.07840 3.16840 3.28588 3.52765 3.75295 3.81327 3.96480 3.99109 4.15907 4.18754 4.28862 4.33847 4.42163 4.49170 4.49195 4.66724 4.70245 4.77518 4.80581 4.83044 4.85269 4.95668 4.97184 5.01407 5.06693 5.22941 5.27280 5.30581 5.33785 5.64899 5.70344 6.05003 6.14776 6.20403 6.21975 6.52078 6.62200 6.88174 7.40784 8.89749 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.003545 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.178203 B = 7896.718045 C = 9287.713587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.318 6.318 3 C 0.161 3.839 4 C -0.174 4.174 5 C 0.004 3.996 6 C -0.193 4.193 7 C -0.106 4.106 8 C -0.077 4.077 9 C 0.575 3.425 10 O -0.485 6.485 11 N -0.569 5.569 12 C 0.286 3.714 13 N -0.552 5.552 14 C 0.219 3.781 15 C -0.521 4.521 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.958 3.042 20 H -0.275 1.275 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.069 3.931 24 C -0.132 4.132 25 C -0.170 4.170 26 C 0.571 3.429 27 O -0.493 6.493 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.076 0.924 36 H -0.024 1.024 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 -20.677 4.018 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.230 6.230 3 C 0.114 3.886 4 C -0.193 4.193 5 C -0.015 4.015 6 C -0.197 4.197 7 C -0.110 4.110 8 C -0.096 4.096 9 C 0.365 3.635 10 O -0.359 6.359 11 N -0.311 5.311 12 C 0.076 3.924 13 N -0.278 5.278 14 C 0.093 3.907 15 C -0.559 4.559 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.199 1.199 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.039 4.039 24 C -0.189 4.189 25 C -0.229 4.229 26 C 0.362 3.638 27 O -0.366 6.366 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.203 0.797 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.108 0.892 35 H 0.094 0.906 36 H -0.006 1.006 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.882 -20.365 3.709 27.354 hybrid contribution 0.758 1.349 0.448 1.611 sum -17.124 -19.016 4.157 25.925 Atomic orbital electron populations 1.23587 0.75106 1.06414 1.03317 1.86081 1.24471 1.25363 1.87102 1.19063 0.91168 0.85701 0.92710 1.21777 1.02614 0.89805 1.05082 1.20813 0.90293 0.99726 0.90653 1.20392 0.95679 0.91923 1.11726 1.20069 0.92104 0.94775 1.04013 1.19954 0.92291 0.96472 1.00886 1.18656 0.89667 0.81344 0.73821 1.90750 1.41357 1.58432 1.45327 1.46848 1.09154 1.08498 1.66600 1.21898 0.83823 0.94900 0.91801 1.61913 1.43763 1.04480 1.17635 1.19329 0.90896 0.85028 0.95416 1.21501 0.95321 0.91340 1.47767 0.92966 1.25714 0.96403 1.01739 0.94984 1.70057 1.13163 1.23361 1.50308 0.85497 0.79014 0.79160 0.77968 1.19948 1.20084 1.20073 1.21860 0.93243 0.92974 0.95830 1.21753 1.01493 1.01650 0.94050 1.22307 0.97991 1.02140 1.00444 1.18810 0.82932 0.88378 0.73705 1.90819 1.82149 1.18739 1.44914 0.90491 0.90636 0.85992 0.79693 0.82091 0.82451 0.89186 0.90642 1.00619 0.95480 0.92665 0.90619 0.93825 0.90149 0.93165 0.93366 0.90335 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.80 113.37 1.11 1.14 16 2 O -0.32 -3.79 10.48 -90.31 -0.95 -4.73 16 3 C 0.16 2.39 6.70 22.67 0.15 2.54 16 4 C -0.17 -2.08 9.02 22.43 0.20 -1.87 16 5 C 0.00 0.07 10.08 22.41 0.23 0.29 16 6 C -0.19 -5.23 6.40 -19.99 -0.13 -5.36 16 7 C -0.11 -2.78 6.40 -20.01 -0.13 -2.91 16 8 C -0.08 -1.52 10.03 22.55 0.23 -1.29 16 9 C 0.57 19.11 7.29 86.83 0.63 19.74 16 10 O -0.49 -17.27 16.11 -3.55 -0.06 -17.32 16 11 N -0.57 -21.42 2.83 -773.56 -2.19 -23.61 16 12 C 0.29 12.14 5.24 170.81 0.90 13.04 16 13 N -0.55 -25.33 4.46 -887.79 -3.96 -29.29 16 14 C 0.22 11.75 3.27 85.56 0.28 12.03 16 15 C -0.52 -30.84 8.53 25.60 0.22 -30.62 16 16 H 0.05 3.23 7.81 -2.91 -0.02 3.21 16 17 C 0.01 0.59 5.46 84.66 0.46 1.05 16 18 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 19 Si 0.96 46.84 29.54 68.60 2.03 48.86 16 20 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.07 2.69 2.88 44.92 0.13 2.82 16 24 C -0.13 -4.83 9.18 71.99 0.66 -4.17 16 25 C -0.17 -6.16 8.54 71.98 0.61 -5.55 16 26 C 0.57 21.22 8.01 86.75 0.69 21.92 16 27 O -0.49 -22.05 17.68 -3.66 -0.06 -22.11 16 28 H 0.08 0.03 7.64 -2.39 -0.02 0.02 16 29 H 0.08 0.06 7.65 -2.39 -0.02 0.05 16 30 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.19 0.66 6.24 -2.91 -0.02 0.65 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.09 4.25 7.08 -2.39 -0.02 4.23 16 35 H 0.08 3.01 5.99 -2.38 -0.01 2.99 16 36 H -0.02 -1.35 7.33 -2.39 -0.02 -1.37 16 37 H 0.03 1.55 5.88 -2.39 -0.01 1.54 16 38 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 39 H 0.08 2.90 5.51 -2.39 -0.01 2.89 16 40 H 0.04 1.77 6.29 -2.39 -0.02 1.76 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.73 6.48 -2.39 -0.02 1.72 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.05 1.84 6.74 -2.39 -0.02 1.82 16 Total: -1.00 -75.71 370.18 2.36 -73.35 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.03 Total: 8.07 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 6.25 Total: 22.80 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -5.87 Total: -108.90 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.07 Total: -44.17 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.71 2.36 -73.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844686631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.025 kcal (2) G-P(sol) polarization free energy of solvation -75.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds