Wall clock time and date at job start Tue Mar 31 2020 17:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00289 * 9 7 5 11 11 H 1.48505 * 109.47382 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47234 * 300.00263 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.53001 * 109.47063 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47447 * 180.02562 * 16 15 14 18 18 N 1.41594 * 114.00349 * 179.97438 * 17 16 15 19 19 C 1.34519 * 124.46234 * 269.70040 * 18 17 16 20 20 O 1.21449 * 125.70735 * 0.02834 * 19 18 17 21 21 C 1.47816 * 108.58434 * 179.90342 * 19 18 17 22 22 C 1.38563 * 134.30057 * 180.12523 * 21 19 18 23 23 C 1.38612 * 119.71591 * 180.28804 * 22 21 19 24 24 C 1.38224 * 120.46459 * 359.95294 * 23 22 21 25 25 C 1.38609 * 120.45550 * 0.02628 * 24 23 22 26 26 C 1.38557 * 119.72354 * 359.97438 * 25 24 23 27 27 C 1.34529 * 124.45961 * 89.99220 * 18 17 16 28 28 O 1.21441 * 125.70913 * 359.95124 * 27 18 17 29 29 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 30 30 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 31 31 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 32 32 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 33 33 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 34 34 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 35 35 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 36 36 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 37 37 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 38 38 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 39 39 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 40 40 H 1.09003 * 109.46609 * 299.99887 * 16 15 14 41 41 H 1.09000 * 109.47436 * 59.99385 * 16 15 14 42 42 H 1.07997 * 120.14396 * 0.23733 * 22 21 19 43 43 H 1.08005 * 119.76640 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.77394 * 180.02562 * 24 23 22 45 45 H 1.08012 * 120.13710 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5948 0.1482 -0.2882 11 1 6.3694 0.2278 -2.7017 12 1 6.4845 2.2867 -1.4263 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2249 5.7221 2.2819 17 8 0.9784 6.3320 3.5505 18 7 0.8780 7.7435 3.5012 19 6 1.9156 8.5862 3.6525 20 8 3.0693 8.2619 3.8494 21 6 1.4171 9.9729 3.5358 22 6 2.0106 11.2233 3.6013 23 6 1.2335 12.3613 3.4515 24 6 -0.1279 12.2570 3.2366 25 6 -0.7351 11.0129 3.1683 26 6 0.0289 9.8665 3.3162 27 6 -0.2686 8.4186 3.3026 28 8 -1.3645 7.9217 3.1388 29 1 -0.3633 0.5981 -0.8357 30 1 -0.3633 -1.0227 -0.1001 31 1 -0.3633 0.4248 0.9358 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7978 -0.0492 -2.9747 35 1 0.7987 1.7197 1.6189 36 1 2.5182 3.9269 0.6894 37 1 0.7651 3.7925 0.4126 38 1 0.3756 3.8293 2.8612 39 1 2.1288 3.9637 3.1380 40 1 2.1638 6.0977 1.8750 41 1 0.4106 5.9626 1.5984 42 1 3.0738 11.3109 3.7691 43 1 1.6952 13.3364 3.5028 44 1 -0.7227 13.1511 3.1210 45 1 -1.7995 10.9374 3.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846982317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:40 Heat of formation + Delta-G solvation = -11.346060 kcal Electronic energy + Delta-G solvation = -27280.240308 eV Core-core repulsion = 23266.031962 eV Total energy + Delta-G solvation = -4014.208347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.49593 -39.09602 -38.99821 -37.61783 -36.54102 -35.57671 -33.52394 -31.81298 -31.74248 -31.00380 -29.64278 -26.65260 -25.60925 -24.75810 -23.78674 -22.67324 -22.53579 -21.08214 -20.72372 -19.49286 -18.51902 -18.27046 -17.24663 -17.09021 -16.35014 -15.91580 -15.61844 -15.56912 -15.10502 -14.94809 -14.69140 -14.60648 -14.37898 -14.29777 -13.78817 -13.30319 -13.22410 -12.92239 -12.83699 -12.53182 -12.26124 -12.02444 -11.71756 -11.39074 -11.20626 -11.03932 -10.95463 -10.79877 -10.64366 -10.56826 -10.40516 -10.15946 -9.95301 -9.83972 -9.82765 -9.68272 -9.59811 -9.08140 -8.33708 -7.26223 -5.96069 -4.00361 -0.48101 0.37357 0.89964 1.50461 2.49590 3.01140 3.10173 3.35390 3.39128 3.43225 3.61267 3.86364 3.99233 4.28395 4.45751 4.46544 4.60229 4.77810 4.91872 4.95789 5.16661 5.18769 5.31223 5.32451 5.41175 5.49360 5.58466 5.66345 5.85724 5.95453 5.95938 6.10763 6.15112 6.17117 6.17799 6.41871 6.47203 6.59948 6.77117 6.85107 7.07818 7.18342 7.38243 7.48358 7.78193 7.91902 8.27792 8.39231 8.74547 9.07305 9.64592 11.09315 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.002203 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.605086 B =12709.323980 C =13767.960043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.685 5.685 14 C 0.074 3.926 15 C -0.105 4.105 16 C 0.023 3.977 17 O -0.103 6.103 18 N -0.448 5.448 19 C 0.572 3.428 20 O -0.442 6.442 21 C -0.130 4.130 22 C -0.041 4.041 23 C -0.094 4.094 24 C -0.094 4.094 25 C -0.042 4.042 26 C -0.131 4.131 27 C 0.573 3.427 28 O -0.447 6.447 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.318 0.682 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 26.117 10.660 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.056 4.056 15 C -0.145 4.145 16 C -0.054 4.054 17 O -0.105 6.105 18 N -0.234 5.234 19 C 0.361 3.639 20 O -0.311 6.311 21 C -0.134 4.134 22 C -0.060 4.060 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.060 4.060 26 C -0.135 4.135 27 C 0.363 3.637 28 O -0.316 6.316 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.841 25.365 10.907 28.703 hybrid contribution 0.196 -0.241 -0.910 0.962 sum -7.646 25.124 9.997 28.100 Atomic orbital electron populations 1.21885 0.99579 0.99768 0.99556 1.21768 0.91248 1.00241 1.03152 1.19165 0.95538 0.90046 0.84062 0.98056 1.21179 0.91234 1.36659 1.04268 0.92076 1.24963 0.98155 0.95613 0.95837 1.69862 1.34789 1.39473 1.09547 0.86598 0.85711 0.78163 0.77138 1.20255 1.21454 1.20428 1.60628 1.36192 1.01579 1.33274 1.21653 1.00631 0.90654 0.92671 1.21526 1.03643 0.88619 1.00679 1.23428 1.01448 0.95415 0.85157 1.90839 1.94637 0.95412 1.29597 1.48210 1.09874 0.98352 1.66977 1.18573 0.84371 0.85256 0.75706 1.90859 1.16946 1.81651 1.41629 1.20380 0.94452 0.93302 1.05270 1.20849 1.01235 0.89201 0.94727 1.21508 0.93878 0.98790 0.96986 1.21502 0.95148 0.97429 0.97146 1.20836 1.00708 0.89727 0.94759 1.20374 0.94810 0.92865 1.05473 1.18568 0.83211 0.86613 0.75350 1.90838 1.23114 1.75019 1.42600 0.93914 0.94323 0.94581 0.88188 0.93958 0.93018 0.86481 0.90389 0.96467 0.91157 0.89688 0.91188 0.91622 0.83626 0.83752 0.83763 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.65 37.16 0.36 -2.59 16 2 C -0.13 -2.99 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.50 2.02 -68.86 -0.14 5.36 16 4 H 0.00 0.05 7.85 -51.93 -0.41 -0.36 16 5 C -0.49 -13.78 8.55 -34.44 -0.29 -14.07 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.68 11.29 55.43 0.63 -25.05 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.69 -14.65 6.27 -107.95 -0.68 -15.33 16 14 C 0.07 1.40 5.45 -3.82 -0.02 1.38 16 15 C -0.11 -1.65 5.89 -26.73 -0.16 -1.81 16 16 C 0.02 0.34 6.40 37.16 0.24 0.58 16 17 O -0.10 -1.60 11.36 -27.91 -0.32 -1.92 16 18 N -0.45 -6.13 3.16 -13.25 -0.04 -6.17 16 19 C 0.57 7.26 8.24 -12.46 -0.10 7.16 16 20 O -0.44 -6.80 18.02 -0.77 -0.01 -6.82 16 21 C -0.13 -1.16 6.41 -104.83 -0.67 -1.83 16 22 C -0.04 -0.23 10.09 -39.32 -0.40 -0.63 16 23 C -0.09 -0.30 10.03 -39.45 -0.40 -0.69 16 24 C -0.09 -0.29 10.04 -39.45 -0.40 -0.69 16 25 C -0.04 -0.23 10.09 -39.33 -0.40 -0.63 16 26 C -0.13 -1.16 6.41 -104.83 -0.67 -1.83 16 27 C 0.57 7.13 8.24 -12.45 -0.10 7.03 16 28 O -0.45 -6.62 18.02 -0.76 -0.01 -6.64 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.63 6.65 -51.93 -0.35 0.29 16 32 H 0.10 2.67 5.94 -51.93 -0.31 2.36 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.32 6.20 6.65 -39.29 -0.26 5.93 16 36 H 0.08 1.60 7.92 -51.93 -0.41 1.18 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.14 0.05 8.06 -52.48 -0.42 -0.38 16 44 H 0.14 0.03 8.06 -52.49 -0.42 -0.39 16 45 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -33.15 385.63 -9.39 -42.54 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.35 Total: 1.81 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -3.39 Total: -4.97 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.09 Total: -46.55 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.34 Total: -15.37 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.15 -9.39 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846982317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.195 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds