Wall clock time and date at job start Tue Mar 31 2020 17:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00289 * 9 7 5 11 11 H 1.48505 * 109.47382 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47234 * 300.00263 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.53001 * 109.47063 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47447 * 180.02562 * 16 15 14 18 18 N 1.41594 * 114.00349 * 179.97438 * 17 16 15 19 19 C 1.34519 * 124.46234 * 269.70040 * 18 17 16 20 20 O 1.21449 * 125.70735 * 0.02834 * 19 18 17 21 21 C 1.47816 * 108.58434 * 179.90342 * 19 18 17 22 22 C 1.38563 * 134.30057 * 180.12523 * 21 19 18 23 23 C 1.38612 * 119.71591 * 180.28804 * 22 21 19 24 24 C 1.38224 * 120.46459 * 359.95294 * 23 22 21 25 25 C 1.38609 * 120.45550 * 0.02628 * 24 23 22 26 26 C 1.38557 * 119.72354 * 359.97438 * 25 24 23 27 27 C 1.34529 * 124.45961 * 89.99220 * 18 17 16 28 28 O 1.21441 * 125.70913 * 359.95124 * 27 18 17 29 29 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 30 30 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 31 31 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 32 32 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 33 33 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 34 34 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 35 35 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 36 36 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 37 37 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 38 38 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 39 39 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 40 40 H 1.09003 * 109.46609 * 299.99887 * 16 15 14 41 41 H 1.09000 * 109.47436 * 59.99385 * 16 15 14 42 42 H 1.07997 * 120.14396 * 0.23733 * 22 21 19 43 43 H 1.08005 * 119.76640 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.77394 * 180.02562 * 24 23 22 45 45 H 1.08012 * 120.13710 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5948 0.1482 -0.2882 11 1 6.3694 0.2278 -2.7017 12 1 6.4845 2.2867 -1.4263 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2249 5.7221 2.2819 17 8 0.9784 6.3320 3.5505 18 7 0.8780 7.7435 3.5012 19 6 1.9156 8.5862 3.6525 20 8 3.0693 8.2619 3.8494 21 6 1.4171 9.9729 3.5358 22 6 2.0106 11.2233 3.6013 23 6 1.2335 12.3613 3.4515 24 6 -0.1279 12.2570 3.2366 25 6 -0.7351 11.0129 3.1683 26 6 0.0289 9.8665 3.3162 27 6 -0.2686 8.4186 3.3026 28 8 -1.3645 7.9217 3.1388 29 1 -0.3633 0.5981 -0.8357 30 1 -0.3633 -1.0227 -0.1001 31 1 -0.3633 0.4248 0.9358 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7978 -0.0492 -2.9747 35 1 0.7987 1.7197 1.6189 36 1 2.5182 3.9269 0.6894 37 1 0.7651 3.7925 0.4126 38 1 0.3756 3.8293 2.8612 39 1 2.1288 3.9637 3.1380 40 1 2.1638 6.0977 1.8750 41 1 0.4106 5.9626 1.5984 42 1 3.0738 11.3109 3.7691 43 1 1.6952 13.3364 3.5028 44 1 -0.7227 13.1511 3.1210 45 1 -1.7995 10.9374 3.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846982317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:39 Heat of formation + Delta-G solvation = -32.383372 kcal Electronic energy + Delta-G solvation = -27281.152555 eV Core-core repulsion = 23266.031962 eV Total energy + Delta-G solvation = -4015.120593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.34496 -40.02118 -39.78251 -38.81444 -38.18658 -36.59825 -35.15029 -33.69349 -32.18651 -32.02651 -30.94078 -28.56338 -26.42177 -26.11162 -24.77472 -24.19265 -23.35332 -22.54972 -21.49152 -21.40870 -19.55824 -18.98635 -18.44561 -18.14636 -17.88881 -17.15098 -16.82970 -16.62019 -16.37436 -15.98186 -15.90975 -15.52694 -15.45374 -15.42661 -15.09680 -14.82287 -14.60992 -14.02485 -13.80075 -13.69767 -13.36810 -13.28667 -13.09222 -12.97612 -12.67753 -12.65835 -12.57751 -12.40291 -12.00689 -11.85736 -11.83763 -11.60422 -11.53279 -11.38589 -11.26636 -11.06706 -10.45672 -10.28702 -10.27169 -9.09315 -8.09741 -6.21920 -1.17389 -0.13895 -0.03350 0.83514 1.39619 1.41005 1.48985 1.56835 2.41303 2.43763 2.56033 2.58786 2.99833 3.15193 3.49171 3.51726 3.69215 3.87794 4.03512 4.03966 4.15174 4.17852 4.22673 4.37134 4.40756 4.48064 4.54925 4.58801 4.68134 4.81576 4.81937 4.84435 4.99147 5.06438 5.15303 5.20609 5.20857 5.22839 5.27064 5.34306 5.56272 5.66782 5.71513 5.85621 5.86098 6.31516 6.37557 6.43939 6.90264 6.94209 7.46869 8.93442 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.002203 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.605086 B =12709.323980 C =13767.960043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.224 3.776 4 H -0.029 1.029 5 C -0.516 4.516 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.079 3.921 15 C -0.091 4.091 16 C 0.033 3.967 17 O -0.127 6.127 18 N -0.457 5.457 19 C 0.568 3.432 20 O -0.484 6.484 21 C -0.150 4.150 22 C -0.037 4.037 23 C -0.075 4.075 24 C -0.075 4.075 25 C -0.035 4.035 26 C -0.150 4.150 27 C 0.570 3.430 28 O -0.482 6.482 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.331 0.669 36 H 0.055 0.945 37 H 0.024 0.976 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.158 0.842 43 H 0.187 0.813 44 H 0.188 0.812 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 29.618 11.263 33.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.116 3.884 4 H -0.012 1.012 5 C -0.554 4.554 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.558 5.558 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.320 5.320 14 C -0.051 4.051 15 C -0.130 4.130 16 C -0.044 4.044 17 O -0.129 6.129 18 N -0.244 5.244 19 C 0.360 3.640 20 O -0.356 6.356 21 C -0.154 4.154 22 C -0.056 4.056 23 C -0.093 4.093 24 C -0.092 4.092 25 C -0.054 4.054 26 C -0.154 4.154 27 C 0.362 3.638 28 O -0.354 6.354 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.176 0.824 43 H 0.204 0.796 44 H 0.205 0.795 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.562 28.886 11.524 32.257 hybrid contribution 0.374 -1.134 -1.069 1.603 sum -8.188 27.753 10.454 30.766 Atomic orbital electron populations 1.21759 0.96184 1.01252 1.00543 1.21596 0.94303 0.98731 1.01349 1.18956 0.94127 0.90853 0.84463 1.01166 1.21438 0.92815 1.36911 1.04272 0.93365 1.25680 1.02352 0.95253 0.95543 1.69985 1.36313 1.39748 1.09801 0.85657 0.80701 0.78215 0.77306 1.19883 1.20645 1.20095 1.60496 1.37198 1.02884 1.31374 1.21575 0.99712 0.89323 0.94531 1.21286 1.03948 0.89277 0.98487 1.23228 1.01338 0.94696 0.85172 1.90751 1.94717 0.97589 1.29820 1.48605 1.11137 0.97218 1.67402 1.19330 0.83637 0.86797 0.74249 1.90817 1.18299 1.82515 1.43925 1.20198 0.94429 0.92099 1.08702 1.21226 1.02334 0.88538 0.93472 1.22032 0.93781 0.99360 0.94102 1.22038 0.95476 0.97545 0.94183 1.21232 1.01440 0.89442 0.93287 1.20202 0.95176 0.91182 1.08810 1.19273 0.82265 0.88239 0.73989 1.90799 1.24045 1.75967 1.44568 0.94476 0.92282 0.92308 0.91240 0.94380 0.92957 0.85005 0.92654 0.95828 0.89791 0.90455 0.91796 0.91110 0.82402 0.79611 0.79524 0.82153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 9.65 71.98 0.69 -4.66 16 2 C -0.12 -5.84 5.36 30.60 0.16 -5.68 16 3 C 0.22 11.56 2.02 44.17 0.09 11.65 16 4 H -0.03 -1.66 7.85 -2.39 -0.02 -1.68 16 5 C -0.52 -29.58 8.55 25.60 0.22 -29.36 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.57 5.29 84.65 0.45 1.02 16 8 N -0.92 -53.71 11.29 21.45 0.24 -53.47 16 9 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 N -0.69 -29.89 6.27 -495.44 -3.11 -32.99 16 14 C 0.08 3.05 5.45 86.30 0.47 3.52 16 15 C -0.09 -2.93 5.89 30.60 0.18 -2.75 16 16 C 0.03 1.04 6.40 71.98 0.46 1.50 16 17 O -0.13 -4.17 11.36 -23.05 -0.26 -4.44 16 18 N -0.46 -13.34 3.16 -432.75 -1.37 -14.70 16 19 C 0.57 15.28 8.24 86.82 0.72 16.00 16 20 O -0.48 -15.91 18.02 2.36 0.04 -15.86 16 21 C -0.15 -2.61 6.41 -20.00 -0.13 -2.74 16 22 C -0.04 -0.32 10.09 22.44 0.23 -0.09 16 23 C -0.08 -0.09 10.03 22.36 0.22 0.14 16 24 C -0.07 -0.07 10.04 22.36 0.22 0.16 16 25 C -0.04 -0.28 10.09 22.43 0.23 -0.06 16 26 C -0.15 -2.53 6.41 -20.00 -0.13 -2.66 16 27 C 0.57 14.82 8.24 86.82 0.72 15.54 16 28 O -0.48 -14.93 18.02 2.38 0.04 -14.88 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 1.96 6.65 -2.39 -0.02 1.95 16 32 H 0.07 3.79 5.94 -2.39 -0.01 3.78 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.33 12.77 6.65 -89.69 -0.60 12.18 16 36 H 0.05 2.38 7.92 -2.39 -0.02 2.36 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 43 H 0.19 -1.19 8.06 -2.91 -0.02 -1.21 16 44 H 0.19 -1.27 8.06 -2.91 -0.02 -1.30 16 45 H 0.16 0.77 8.06 -2.90 -0.02 0.75 16 Total: -1.00 -77.14 385.63 2.84 -74.30 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.41 Total: 13.19 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.80 Total: 1.52 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -4.23 Total: -101.16 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.18 Total: -35.18 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -77.14 2.84 -74.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846982317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.916 kcal (2) G-P(sol) polarization free energy of solvation -77.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds