Wall clock time and date at job start Tue Mar 31 2020 17:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47487 * 2 1 4 4 H 1.09000 * 109.47194 * 54.50532 * 3 2 1 5 5 C 1.50705 * 109.47410 * 174.50253 * 3 2 1 6 6 H 1.07993 * 119.99811 * 120.00000 * 5 3 2 7 7 C 1.37872 * 119.99765 * 300.00268 * 5 3 2 8 8 N 1.31518 * 120.00195 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47070 * 120.00232 * 9 7 5 12 12 H 1.48500 * 109.47313 * 239.99810 * 9 7 5 13 13 N 1.46904 * 109.47202 * 294.50508 * 3 2 1 14 14 C 1.46906 * 110.99973 * 154.42128 * 13 3 2 15 15 C 1.52996 * 109.47225 * 174.78446 * 14 13 3 16 16 C 1.52992 * 109.47260 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47207 * 180.02562 * 16 15 14 18 18 N 1.41601 * 114.00208 * 180.02562 * 17 16 15 19 19 C 1.34524 * 124.46165 * 269.70129 * 18 17 16 20 20 O 1.21455 * 125.70785 * 0.03399 * 19 18 17 21 21 C 1.47809 * 108.58163 * 179.90419 * 19 18 17 22 22 C 1.38566 * 134.29988 * 180.12947 * 21 19 18 23 23 C 1.38616 * 119.72135 * 180.28677 * 22 21 19 24 24 C 1.38228 * 120.45739 * 359.95361 * 23 22 21 25 25 C 1.38611 * 120.46074 * 0.02562 * 24 23 22 26 26 C 1.38567 * 119.71776 * 0.02562 * 25 24 23 27 27 C 1.34529 * 124.46010 * 90.00105 * 18 17 16 28 28 O 1.21444 * 125.70823 * 359.94130 * 27 18 17 29 29 H 1.09001 * 109.47328 * 306.00747 * 1 2 3 30 30 H 1.09004 * 109.47114 * 66.00407 * 1 2 3 31 31 H 1.08997 * 109.47409 * 186.00562 * 1 2 3 32 32 H 1.09007 * 109.46982 * 240.00540 * 2 1 3 33 33 H 1.08996 * 109.47232 * 120.00675 * 2 1 3 34 34 H 0.96997 * 119.99750 * 179.97438 * 8 7 5 35 35 H 1.00890 * 110.99786 * 30.46501 * 13 3 2 36 36 H 1.09000 * 109.46831 * 294.78581 * 14 13 3 37 37 H 1.09006 * 109.46966 * 54.78558 * 14 13 3 38 38 H 1.09003 * 109.47217 * 300.00359 * 15 14 13 39 39 H 1.09006 * 109.47057 * 60.00168 * 15 14 13 40 40 H 1.09003 * 109.47462 * 300.00409 * 16 15 14 41 41 H 1.09002 * 109.46970 * 60.00684 * 16 15 14 42 42 H 1.08009 * 120.13847 * 0.24044 * 22 21 19 43 43 H 1.08003 * 119.76983 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.76648 * 180.02562 * 24 23 22 45 45 H 1.07995 * 120.13801 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5986 1.9839 0.8367 5 6 3.5409 1.4446 0.1361 6 1 4.1524 1.8869 -0.6363 7 6 4.1331 0.8818 1.2467 8 7 3.3883 0.3436 2.1876 9 14 5.9935 0.8839 1.4151 10 1 6.5971 1.5457 0.2307 11 1 6.3785 1.6230 2.6443 12 1 6.4840 -0.5149 1.5047 13 7 1.6617 2.0956 -1.2603 14 6 1.5682 3.5519 -1.0911 15 6 1.3012 4.2069 -2.4477 16 6 1.2032 5.7235 -2.2714 17 8 0.9532 6.3351 -3.5385 18 7 0.8452 7.7460 -3.4856 19 6 -0.3058 8.4146 -3.2910 20 8 -1.4001 7.9114 -3.1345 21 6 -0.0154 9.8638 -3.2962 22 6 -0.7856 11.0057 -3.1449 23 6 -0.1851 12.2534 -3.2101 24 6 1.1759 12.3656 -3.4239 25 6 1.9590 11.2321 -3.5767 26 6 1.3722 9.9784 -3.5149 27 6 1.8792 8.5946 -3.6292 28 8 3.0356 8.2768 -3.8207 29 1 -0.3634 0.6042 0.8313 30 1 -0.3633 0.4179 -0.9389 31 1 -0.3634 -1.0220 0.1075 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8050 -0.0526 2.9687 35 1 0.7978 1.7170 -1.6186 36 1 0.7523 3.7866 -0.4074 37 1 2.5050 3.9311 -0.6826 38 1 2.1170 3.9721 -3.1314 39 1 0.3644 3.8277 -2.8562 40 1 0.3872 5.9579 -1.5879 41 1 2.1398 6.1030 -1.8629 42 1 -1.8496 10.9240 -2.9775 43 1 -0.7848 13.1439 -3.0926 44 1 1.6322 13.3432 -3.4723 45 1 3.0218 11.3259 -3.7439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846982319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:44 Heat of formation + Delta-G solvation = -11.417354 kcal Electronic energy + Delta-G solvation = -27279.601365 eV Core-core repulsion = 23265.389926 eV Total energy + Delta-G solvation = -4014.211438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49594 -39.09530 -38.99753 -37.61794 -36.54310 -35.57730 -33.52552 -31.81483 -31.74224 -31.00420 -29.64315 -26.65636 -25.60988 -24.75848 -23.78742 -22.67311 -22.53927 -21.08379 -20.72443 -19.49578 -18.51909 -18.27054 -17.24706 -17.08984 -16.35244 -15.91733 -15.61862 -15.57127 -15.10654 -14.94810 -14.68898 -14.60672 -14.37879 -14.29949 -13.78773 -13.30353 -13.22312 -12.92284 -12.84519 -12.53460 -12.26330 -12.02250 -11.72048 -11.39438 -11.21241 -11.04944 -10.95717 -10.82471 -10.59778 -10.56123 -10.40379 -10.16014 -9.95842 -9.84026 -9.82762 -9.68730 -9.59907 -9.06606 -8.34560 -7.26139 -5.96545 -4.00615 -0.48165 0.37301 0.89898 1.50415 2.49517 3.01090 3.10143 3.32070 3.40073 3.46083 3.61235 3.86311 3.99221 4.28377 4.45725 4.46502 4.60163 4.77773 4.91813 4.95702 5.16624 5.18686 5.31167 5.32254 5.41078 5.49310 5.58428 5.66228 5.85660 5.95356 5.95900 6.10724 6.14863 6.16863 6.17562 6.41648 6.47095 6.59701 6.77073 6.84860 7.07514 7.18155 7.38176 7.48119 7.77956 7.92238 8.27645 8.39064 8.74305 9.07829 9.64521 11.08937 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.002201 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.233919 B =12717.631765 C =13776.841547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.685 5.685 14 C 0.074 3.926 15 C -0.105 4.105 16 C 0.023 3.977 17 O -0.104 6.104 18 N -0.448 5.448 19 C 0.573 3.427 20 O -0.447 6.447 21 C -0.131 4.131 22 C -0.042 4.042 23 C -0.094 4.094 24 C -0.094 4.094 25 C -0.041 4.041 26 C -0.130 4.130 27 C 0.572 3.428 28 O -0.442 6.442 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.100 0.900 34 H 0.259 0.741 35 H 0.318 0.682 36 H 0.017 0.983 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 26.137 -10.625 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.317 5.317 14 C -0.056 4.056 15 C -0.145 4.145 16 C -0.054 4.054 17 O -0.105 6.105 18 N -0.234 5.234 19 C 0.363 3.637 20 O -0.316 6.316 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.060 4.060 26 C -0.134 4.134 27 C 0.361 3.639 28 O -0.311 6.311 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.135 0.865 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.979 25.396 -10.884 28.759 hybrid contribution 0.187 -0.265 0.933 0.987 sum -7.792 25.131 -9.951 28.131 Atomic orbital electron populations 1.21884 0.99574 0.99783 0.99550 1.21766 0.91253 1.00242 1.03160 1.19179 0.95571 0.90037 0.84103 0.98031 1.21259 0.91225 1.36391 1.04281 0.91958 1.24969 0.98175 0.95645 0.95842 1.69885 1.34617 1.39567 1.09605 0.86492 0.85751 0.77628 0.77863 1.19727 1.21256 1.21095 1.60626 1.36287 1.01482 1.33274 1.21655 1.00585 0.90680 0.92688 1.21523 1.03635 0.88630 1.00682 1.23427 1.01423 0.95388 0.85205 1.90840 1.94549 0.95506 1.29591 1.48214 1.09760 0.98356 1.67085 1.18566 0.83181 0.86658 0.75331 1.90841 1.23356 1.74720 1.42662 1.20372 0.94825 0.92853 1.05472 1.20839 1.00678 0.89755 0.94756 1.21505 0.95197 0.97374 0.97150 1.21507 0.93833 0.98837 0.96983 1.20849 1.01243 0.89193 0.94728 1.20379 0.94428 0.93318 1.05275 1.18577 0.84443 0.85208 0.75685 1.90858 1.16720 1.81843 1.41658 0.93916 0.94576 0.94317 0.93952 0.88187 0.93139 0.86477 0.96467 0.90394 0.89684 0.91157 0.91636 0.91173 0.83676 0.83763 0.83751 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.64 37.15 0.36 -2.59 16 2 C -0.13 -2.99 5.36 -26.74 -0.14 -3.13 16 3 C 0.22 5.47 2.02 -68.86 -0.14 5.33 16 4 H 0.00 0.06 7.85 -51.93 -0.41 -0.35 16 5 C -0.49 -13.72 8.57 -34.44 -0.30 -14.02 16 6 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.68 11.29 55.43 0.63 -25.05 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.69 -14.64 6.27 -107.94 -0.68 -15.32 16 14 C 0.07 1.39 5.45 -3.82 -0.02 1.37 16 15 C -0.11 -1.65 5.89 -26.74 -0.16 -1.81 16 16 C 0.02 0.34 6.40 37.15 0.24 0.58 16 17 O -0.10 -1.60 11.36 -27.90 -0.32 -1.92 16 18 N -0.45 -6.13 3.16 -13.25 -0.04 -6.17 16 19 C 0.57 7.13 8.24 -12.46 -0.10 7.03 16 20 O -0.45 -6.62 18.02 -0.77 -0.01 -6.63 16 21 C -0.13 -1.16 6.40 -104.84 -0.67 -1.83 16 22 C -0.04 -0.23 10.09 -39.32 -0.40 -0.63 16 23 C -0.09 -0.29 10.04 -39.45 -0.40 -0.69 16 24 C -0.09 -0.30 10.04 -39.45 -0.40 -0.69 16 25 C -0.04 -0.23 10.09 -39.32 -0.40 -0.63 16 26 C -0.13 -1.16 6.40 -104.83 -0.67 -1.83 16 27 C 0.57 7.25 8.24 -12.45 -0.10 7.15 16 28 O -0.44 -6.80 18.02 -0.76 -0.01 -6.81 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.63 6.66 -51.93 -0.35 0.29 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.10 2.67 5.94 -51.93 -0.31 2.36 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.32 6.19 6.64 -39.30 -0.26 5.93 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 1.59 7.94 -51.93 -0.41 1.18 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.14 0.03 8.06 -52.48 -0.42 -0.39 16 44 H 0.14 0.04 8.06 -52.49 -0.42 -0.38 16 45 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -33.21 385.66 -9.39 -42.60 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.35 Total: 1.74 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -3.39 Total: -4.97 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.09 Total: -46.54 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.34 Total: -15.36 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.21 -9.39 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846982319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.184 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds