Wall clock time and date at job start Tue Mar 31 2020 17:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47487 * 2 1 4 4 H 1.09000 * 109.47194 * 54.50532 * 3 2 1 5 5 C 1.50705 * 109.47410 * 174.50253 * 3 2 1 6 6 H 1.07993 * 119.99811 * 120.00000 * 5 3 2 7 7 C 1.37872 * 119.99765 * 300.00268 * 5 3 2 8 8 N 1.31518 * 120.00195 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47070 * 120.00232 * 9 7 5 12 12 H 1.48500 * 109.47313 * 239.99810 * 9 7 5 13 13 N 1.46904 * 109.47202 * 294.50508 * 3 2 1 14 14 C 1.46906 * 110.99973 * 154.42128 * 13 3 2 15 15 C 1.52996 * 109.47225 * 174.78446 * 14 13 3 16 16 C 1.52992 * 109.47260 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47207 * 180.02562 * 16 15 14 18 18 N 1.41601 * 114.00208 * 180.02562 * 17 16 15 19 19 C 1.34524 * 124.46165 * 269.70129 * 18 17 16 20 20 O 1.21455 * 125.70785 * 0.03399 * 19 18 17 21 21 C 1.47809 * 108.58163 * 179.90419 * 19 18 17 22 22 C 1.38566 * 134.29988 * 180.12947 * 21 19 18 23 23 C 1.38616 * 119.72135 * 180.28677 * 22 21 19 24 24 C 1.38228 * 120.45739 * 359.95361 * 23 22 21 25 25 C 1.38611 * 120.46074 * 0.02562 * 24 23 22 26 26 C 1.38567 * 119.71776 * 0.02562 * 25 24 23 27 27 C 1.34529 * 124.46010 * 90.00105 * 18 17 16 28 28 O 1.21444 * 125.70823 * 359.94130 * 27 18 17 29 29 H 1.09001 * 109.47328 * 306.00747 * 1 2 3 30 30 H 1.09004 * 109.47114 * 66.00407 * 1 2 3 31 31 H 1.08997 * 109.47409 * 186.00562 * 1 2 3 32 32 H 1.09007 * 109.46982 * 240.00540 * 2 1 3 33 33 H 1.08996 * 109.47232 * 120.00675 * 2 1 3 34 34 H 0.96997 * 119.99750 * 179.97438 * 8 7 5 35 35 H 1.00890 * 110.99786 * 30.46501 * 13 3 2 36 36 H 1.09000 * 109.46831 * 294.78581 * 14 13 3 37 37 H 1.09006 * 109.46966 * 54.78558 * 14 13 3 38 38 H 1.09003 * 109.47217 * 300.00359 * 15 14 13 39 39 H 1.09006 * 109.47057 * 60.00168 * 15 14 13 40 40 H 1.09003 * 109.47462 * 300.00409 * 16 15 14 41 41 H 1.09002 * 109.46970 * 60.00684 * 16 15 14 42 42 H 1.08009 * 120.13847 * 0.24044 * 22 21 19 43 43 H 1.08003 * 119.76983 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.76648 * 180.02562 * 24 23 22 45 45 H 1.07995 * 120.13801 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5986 1.9839 0.8367 5 6 3.5409 1.4446 0.1361 6 1 4.1524 1.8869 -0.6363 7 6 4.1331 0.8818 1.2467 8 7 3.3883 0.3436 2.1876 9 14 5.9935 0.8839 1.4151 10 1 6.5971 1.5457 0.2307 11 1 6.3785 1.6230 2.6443 12 1 6.4840 -0.5149 1.5047 13 7 1.6617 2.0956 -1.2603 14 6 1.5682 3.5519 -1.0911 15 6 1.3012 4.2069 -2.4477 16 6 1.2032 5.7235 -2.2714 17 8 0.9532 6.3351 -3.5385 18 7 0.8452 7.7460 -3.4856 19 6 -0.3058 8.4146 -3.2910 20 8 -1.4001 7.9114 -3.1345 21 6 -0.0154 9.8638 -3.2962 22 6 -0.7856 11.0057 -3.1449 23 6 -0.1851 12.2534 -3.2101 24 6 1.1759 12.3656 -3.4239 25 6 1.9590 11.2321 -3.5767 26 6 1.3722 9.9784 -3.5149 27 6 1.8792 8.5946 -3.6292 28 8 3.0356 8.2768 -3.8207 29 1 -0.3634 0.6042 0.8313 30 1 -0.3633 0.4179 -0.9389 31 1 -0.3634 -1.0220 0.1075 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8050 -0.0526 2.9687 35 1 0.7978 1.7170 -1.6186 36 1 0.7523 3.7866 -0.4074 37 1 2.5050 3.9311 -0.6826 38 1 2.1170 3.9721 -3.1314 39 1 0.3644 3.8277 -2.8562 40 1 0.3872 5.9579 -1.5879 41 1 2.1398 6.1030 -1.8629 42 1 -1.8496 10.9240 -2.9775 43 1 -0.7848 13.1439 -3.0926 44 1 1.6322 13.3432 -3.4723 45 1 3.0218 11.3259 -3.7439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846982319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:43 Heat of formation + Delta-G solvation = -32.510418 kcal Electronic energy + Delta-G solvation = -27280.516028 eV Core-core repulsion = 23265.389926 eV Total energy + Delta-G solvation = -4015.126102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.34410 -40.01966 -39.78126 -38.81427 -38.18737 -36.59788 -35.15112 -33.69523 -32.18552 -32.02569 -30.94048 -28.56750 -26.42158 -26.11132 -24.77541 -24.19461 -23.35242 -22.55017 -21.49124 -21.41040 -19.55738 -18.98556 -18.45021 -18.14645 -17.88787 -17.15192 -16.82870 -16.61984 -16.37517 -15.98198 -15.90767 -15.52669 -15.45393 -15.42560 -15.09635 -14.82805 -14.61381 -14.02689 -13.79974 -13.69479 -13.37287 -13.28661 -13.10250 -12.98554 -12.69158 -12.65017 -12.54988 -12.39721 -12.01784 -11.85685 -11.83762 -11.60599 -11.53400 -11.38448 -11.26579 -11.05511 -10.46325 -10.28677 -10.27089 -9.09163 -8.10225 -6.22185 -1.17378 -0.13830 -0.03376 0.83551 1.37556 1.39789 1.52009 1.56848 2.41161 2.43820 2.56048 2.58840 2.99870 3.14860 3.49238 3.51748 3.69253 3.87849 4.03552 4.04002 4.15203 4.17877 4.22715 4.37141 4.40782 4.47848 4.54822 4.58767 4.68065 4.81620 4.81966 4.84424 4.99109 5.06397 5.15280 5.20650 5.20870 5.22766 5.27095 5.34242 5.56227 5.66815 5.71741 5.85662 5.86058 6.31503 6.37578 6.43911 6.90654 6.94125 7.46801 8.93350 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.002201 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.233919 B =12717.631765 C =13776.841547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.223 3.777 4 H -0.029 1.029 5 C -0.513 4.513 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.687 5.687 14 C 0.079 3.921 15 C -0.091 4.091 16 C 0.033 3.967 17 O -0.127 6.127 18 N -0.457 5.457 19 C 0.570 3.430 20 O -0.482 6.482 21 C -0.150 4.150 22 C -0.035 4.035 23 C -0.075 4.075 24 C -0.075 4.075 25 C -0.037 4.037 26 C -0.150 4.150 27 C 0.567 3.433 28 O -0.484 6.484 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.261 0.739 35 H 0.331 0.669 36 H 0.024 0.976 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.161 0.839 43 H 0.188 0.812 44 H 0.187 0.813 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 29.619 -11.191 33.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.115 3.885 4 H -0.011 1.011 5 C -0.552 4.552 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.559 5.559 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.320 5.320 14 C -0.051 4.051 15 C -0.130 4.130 16 C -0.044 4.044 17 O -0.129 6.129 18 N -0.244 5.244 19 C 0.362 3.638 20 O -0.354 6.354 21 C -0.154 4.154 22 C -0.054 4.054 23 C -0.092 4.092 24 C -0.093 4.093 25 C -0.056 4.056 26 C -0.154 4.154 27 C 0.360 3.640 28 O -0.355 6.355 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.150 0.850 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.178 0.822 43 H 0.205 0.795 44 H 0.204 0.796 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.732 28.896 -11.461 32.289 hybrid contribution 0.376 -1.152 1.083 1.624 sum -8.356 27.744 -10.379 30.778 Atomic orbital electron populations 1.21758 0.96178 1.01248 1.00556 1.21594 0.94308 0.98729 1.01361 1.18967 0.94145 0.90852 0.84497 1.01129 1.21494 0.92796 1.36653 1.04247 0.93386 1.25683 1.02361 0.95290 0.95550 1.70003 1.36170 1.39836 1.09893 0.85545 0.80729 0.77815 0.77765 1.19767 1.20602 1.20358 1.60493 1.37296 1.02788 1.31388 1.21579 0.99689 0.89341 0.94539 1.21284 1.03924 0.89298 0.98500 1.23227 1.01323 0.94661 0.85218 1.90753 1.94630 0.97679 1.29824 1.48608 1.11023 0.97223 1.67509 1.19271 0.82231 0.88289 0.73969 1.90803 1.24281 1.75674 1.44633 1.20199 0.95210 0.91149 1.08810 1.21235 1.01391 0.89490 0.93284 1.22041 0.95546 0.97468 0.94189 1.22032 0.93716 0.99428 0.94096 1.21226 1.02360 0.88512 0.93474 1.20196 0.94379 0.92140 1.08708 1.19333 0.83719 0.86740 0.74227 1.90816 1.18079 1.82700 1.43954 0.94474 0.92294 0.92288 0.94360 0.91248 0.92980 0.85001 0.95806 0.92645 0.90476 0.89793 0.91110 0.91776 0.82154 0.79525 0.79612 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 9.64 71.98 0.69 -4.66 16 2 C -0.12 -5.84 5.36 30.59 0.16 -5.68 16 3 C 0.22 11.53 2.02 44.17 0.09 11.62 16 4 H -0.03 -1.64 7.85 -2.39 -0.02 -1.66 16 5 C -0.51 -29.44 8.57 25.60 0.22 -29.22 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.53 5.29 84.65 0.45 0.98 16 8 N -0.92 -53.71 11.29 21.45 0.24 -53.47 16 9 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.69 -29.89 6.27 -495.43 -3.11 -32.99 16 14 C 0.08 3.05 5.45 86.30 0.47 3.52 16 15 C -0.09 -2.93 5.89 30.59 0.18 -2.75 16 16 C 0.03 1.04 6.40 71.98 0.46 1.50 16 17 O -0.13 -4.18 11.36 -23.07 -0.26 -4.44 16 18 N -0.46 -13.33 3.16 -432.75 -1.37 -14.70 16 19 C 0.57 14.82 8.24 86.82 0.72 15.53 16 20 O -0.48 -14.92 18.02 2.33 0.04 -14.88 16 21 C -0.15 -2.53 6.40 -20.00 -0.13 -2.66 16 22 C -0.04 -0.28 10.09 22.44 0.23 -0.05 16 23 C -0.07 -0.07 10.04 22.36 0.22 0.16 16 24 C -0.08 -0.09 10.04 22.36 0.22 0.14 16 25 C -0.04 -0.32 10.09 22.44 0.23 -0.09 16 26 C -0.15 -2.61 6.40 -20.00 -0.13 -2.73 16 27 C 0.57 15.27 8.24 86.82 0.72 15.98 16 28 O -0.48 -15.90 18.02 2.37 0.04 -15.85 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.97 6.66 -2.39 -0.02 1.95 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.07 3.79 5.94 -2.39 -0.01 3.77 16 34 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.33 12.77 6.64 -89.70 -0.60 12.17 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 2.38 7.94 -2.38 -0.02 2.36 16 38 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 42 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.19 -1.27 8.06 -2.91 -0.02 -1.30 16 44 H 0.19 -1.19 8.06 -2.91 -0.02 -1.21 16 45 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -77.26 385.66 2.83 -74.42 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.41 Total: 12.97 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.80 Total: 1.57 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -4.23 Total: -101.16 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.18 Total: -35.17 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.26 2.83 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846982319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.913 kcal (2) G-P(sol) polarization free energy of solvation -77.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds