Wall clock time and date at job start Tue Mar 31 2020 17:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47307 * 2 1 4 4 H 1.08995 * 109.47406 * 305.00645 * 3 2 1 5 5 N 1.46505 * 109.46776 * 65.00197 * 3 2 1 6 6 C 1.34779 * 119.99760 * 204.99555 * 5 3 2 7 7 O 1.21357 * 119.99930 * 0.02562 * 6 5 3 8 8 C 1.49353 * 119.99747 * 179.97438 * 6 5 3 9 9 O 1.21374 * 120.00400 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99747 * 180.02562 * 8 6 5 11 11 C 1.39724 * 119.99850 * 175.49824 * 10 8 6 12 12 C 1.39022 * 120.04175 * 214.86144 * 11 10 8 13 13 C 1.38142 * 120.05927 * 179.74455 * 12 11 10 14 14 C 1.38174 * 120.14698 * 0.55352 * 13 12 11 15 15 C 1.38916 * 120.07979 * 359.70690 * 14 13 12 16 16 O 1.35755 * 120.03042 * 180.02562 * 15 14 13 17 17 C 1.34831 * 117.00001 * 5.35511 * 16 15 14 18 18 H 1.07999 * 120.00024 * 354.97412 * 17 16 15 19 19 C 1.38651 * 120.00148 * 174.96858 * 17 16 15 20 20 N 1.31558 * 120.00249 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99799 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47124 * 89.99898 * 21 19 17 23 23 H 1.48503 * 109.47060 * 209.99953 * 21 19 17 24 24 H 1.48497 * 109.47148 * 330.00123 * 21 19 17 25 25 C 1.38759 * 119.94065 * 0.02562 * 15 14 13 26 26 C 1.53003 * 109.47224 * 184.99741 * 3 2 1 27 27 C 1.52992 * 117.50035 * 248.75098 * 26 3 2 28 28 C 1.52995 * 117.49822 * 180.08684 * 26 3 2 29 29 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47007 * 59.99215 * 1 2 3 31 31 H 1.09001 * 109.46922 * 300.00234 * 1 2 3 32 32 H 1.09000 * 109.46549 * 120.00511 * 2 1 3 33 33 H 1.09006 * 109.46568 * 240.00079 * 2 1 3 34 34 H 0.97000 * 120.00642 * 25.00009 * 5 3 2 35 35 H 0.97002 * 120.00173 * 355.50442 * 10 8 6 36 36 H 1.08000 * 119.96851 * 0.02562 * 12 11 10 37 37 H 1.08006 * 119.92405 * 180.28339 * 13 12 11 38 38 H 1.08000 * 119.96213 * 179.71994 * 14 13 12 39 39 H 0.96998 * 120.00071 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.07052 * 180.02562 * 25 15 14 41 41 H 1.09000 * 115.54484 * 34.42146 * 26 3 2 42 42 H 1.09000 * 117.49860 * 359.97438 * 27 26 3 43 43 H 1.09001 * 117.49580 * 145.02086 * 27 26 3 44 44 H 1.09003 * 117.50106 * 214.97857 * 28 26 3 45 45 H 1.09000 * 117.50080 * 0.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 1.5258 3.4383 1.2997 7 8 1.7323 4.1032 0.3057 8 6 1.1301 4.1059 2.5758 9 8 0.9232 3.4410 3.5699 10 7 1.0029 5.4469 2.6235 11 6 0.5422 6.0639 3.7894 12 6 -0.2539 7.2006 3.7074 13 6 -0.7140 7.8078 4.8597 14 6 -0.3753 7.2947 6.0972 15 6 0.4243 6.1623 6.1862 16 8 0.7560 5.6587 7.4025 17 6 0.1877 6.2366 8.4800 18 1 -0.4329 7.1121 8.3588 19 6 0.3999 5.7069 9.7436 20 7 -0.1550 6.2704 10.7949 21 14 1.4738 4.1928 9.9533 22 1 2.8832 4.6108 10.1634 23 1 1.0078 3.4144 11.1290 24 1 1.3841 3.3496 8.7342 25 6 0.8838 5.5463 5.0308 26 6 3.5649 1.4443 -0.1257 27 6 4.3734 1.9000 1.0906 28 6 4.2707 2.8016 -0.1422 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.4871 1.5660 2.0464 35 1 1.2311 5.9836 1.8484 36 1 -0.5167 7.6066 2.7417 37 1 -1.3361 8.6882 4.7933 38 1 -0.7329 7.7745 6.9963 39 1 -0.0063 5.9000 11.6789 40 1 1.5053 4.6655 5.0976 41 1 3.9867 0.6500 -0.7416 42 1 3.8191 2.1989 1.9802 43 1 5.3275 1.4059 1.2746 44 1 5.1573 2.9003 -0.7687 45 1 3.6489 3.6933 -0.0632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850660929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:33 Heat of formation + Delta-G solvation = -36.819335 kcal Electronic energy + Delta-G solvation = -28102.244590 eV Core-core repulsion = 24086.931639 eV Total energy + Delta-G solvation = -4015.312951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22290 -39.84023 -38.75459 -37.59569 -36.79998 -35.12977 -34.29976 -32.62718 -32.39186 -29.84465 -28.91009 -27.65693 -25.38908 -24.81717 -22.75622 -22.41251 -22.07319 -21.35747 -20.48696 -20.28389 -18.76360 -18.06621 -17.38931 -17.00189 -16.91940 -15.90374 -15.47618 -15.45535 -15.25480 -14.81901 -14.53229 -14.25366 -14.10161 -13.98204 -13.72172 -13.56797 -13.16593 -12.95440 -12.71197 -12.46480 -12.32151 -12.02307 -11.84347 -11.76229 -11.74777 -11.59829 -11.36694 -11.16607 -11.00299 -10.87742 -10.57643 -10.23298 -10.20476 -9.95834 -9.69297 -9.45564 -9.30779 -8.88355 -7.92784 -7.38343 -6.42644 -4.09513 1.13858 1.97295 2.17160 2.24672 3.10265 3.24256 3.26294 3.42469 3.44312 3.58699 4.17032 4.24590 4.29108 4.45425 4.49011 4.64033 4.75801 4.81264 4.86081 4.93915 5.09871 5.14329 5.29660 5.34835 5.49476 5.50939 5.56219 5.61952 5.66547 5.69904 5.86808 5.88622 5.95698 5.99963 6.03207 6.07779 6.17633 6.35506 6.57141 6.82490 6.90735 7.05026 7.25902 7.34355 7.47868 7.63787 7.77629 7.92907 8.02430 8.92520 9.54432 10.64643 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.002876 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.305014 B = 9732.806892 C =10708.934941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C 0.173 3.827 4 H 0.097 0.903 5 N -0.693 5.693 6 C 0.514 3.486 7 O -0.516 6.516 8 C 0.498 3.502 9 O -0.492 6.492 10 N -0.636 5.636 11 C 0.165 3.835 12 C -0.220 4.220 13 C -0.059 4.059 14 C -0.228 4.228 15 C 0.172 3.828 16 O -0.212 6.212 17 C -0.389 4.389 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.878 5.878 21 Si 0.903 3.097 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.257 1.257 25 C -0.185 4.185 26 C -0.173 4.173 27 C -0.177 4.177 28 C -0.184 4.184 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.415 0.585 35 H 0.418 0.582 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.280 0.720 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -9.319 -22.985 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.069 3.931 4 H 0.115 0.885 5 N -0.346 5.346 6 C 0.295 3.705 7 O -0.392 6.392 8 C 0.279 3.721 9 O -0.365 6.365 10 N -0.282 5.282 11 C 0.073 3.927 12 C -0.241 4.241 13 C -0.078 4.078 14 C -0.247 4.247 15 C 0.119 3.881 16 O -0.117 6.117 17 C -0.465 4.465 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.516 5.516 21 Si 0.728 3.272 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.181 1.181 25 C -0.206 4.206 26 C -0.192 4.192 27 C -0.214 4.214 28 C -0.221 4.221 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.252 0.748 35 H 0.256 0.744 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.152 0.848 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.657 -9.569 -22.696 25.067 hybrid contribution 0.424 -0.487 0.287 0.707 sum 5.082 -10.056 -22.409 25.082 Atomic orbital electron populations 1.21811 0.95009 1.02102 1.02465 1.21794 0.96645 0.94622 1.03514 1.20682 0.92331 0.93534 0.86540 0.88516 1.45874 1.67765 1.06239 1.14760 1.20078 0.78240 0.83490 0.88701 1.90701 1.48551 1.64111 1.35831 1.20155 0.79663 0.83390 0.88924 1.90850 1.46595 1.63876 1.35180 1.42997 1.63265 1.06135 1.15814 1.17151 0.97039 0.94236 0.84305 1.20381 1.05401 0.99804 0.98525 1.20581 0.97480 0.98216 0.91510 1.21346 1.05312 0.99496 0.98575 1.18831 0.92171 0.91393 0.85685 1.83580 1.61343 1.55161 1.11599 1.20787 1.30277 1.12699 0.82715 0.87472 1.24456 0.97029 0.98625 0.93748 1.69643 1.42417 1.40640 0.98882 0.86209 0.80246 0.82236 0.78482 1.19842 1.20754 1.18128 1.20142 1.07763 1.03970 0.88741 1.22767 0.93537 0.99540 1.03320 1.22977 1.01378 1.04228 0.92861 1.23345 1.02760 0.95142 1.00818 0.92225 0.92487 0.92291 0.90881 0.90011 0.74839 0.74442 0.86847 0.86487 0.84661 0.91005 0.84821 0.86987 0.88775 0.88926 0.89164 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.80 37.16 0.36 -0.63 16 2 C -0.13 -0.74 5.45 -26.73 -0.15 -0.89 16 3 C 0.17 1.35 2.43 -67.93 -0.17 1.18 16 4 H 0.10 0.85 7.58 -51.93 -0.39 0.46 16 5 N -0.69 -6.57 3.06 -54.27 -0.17 -6.74 16 6 C 0.51 6.13 6.72 -11.63 -0.08 6.05 16 7 O -0.52 -6.60 13.51 5.49 0.07 -6.53 16 8 C 0.50 7.23 7.73 -11.63 -0.09 7.14 16 9 O -0.49 -8.58 13.91 5.48 0.08 -8.51 16 10 N -0.64 -9.08 5.32 -10.31 -0.05 -9.14 16 11 C 0.17 2.90 6.29 -83.77 -0.53 2.38 16 12 C -0.22 -3.57 9.97 -39.33 -0.39 -3.96 16 13 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 14 C -0.23 -4.84 9.17 -39.35 -0.36 -5.20 16 15 C 0.17 4.04 6.64 -39.14 -0.26 3.78 16 16 O -0.21 -5.69 8.58 0.03 0.00 -5.69 16 17 C -0.39 -10.99 9.95 30.88 0.31 -10.68 16 18 H 0.11 3.05 5.43 -52.49 -0.29 2.77 16 19 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 20 N -0.88 -25.35 13.96 55.48 0.77 -24.58 16 21 Si 0.90 21.92 28.62 -169.99 -4.86 17.06 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.19 -3.89 8.64 -39.19 -0.34 -4.23 16 26 C -0.17 -1.36 5.70 -90.62 -0.52 -1.87 16 27 C -0.18 -1.62 9.74 -26.70 -0.26 -1.88 16 28 C -0.18 -1.74 9.83 -26.69 -0.26 -2.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 7.75 -51.93 -0.40 0.04 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.41 3.78 8.07 -40.82 -0.33 3.45 16 35 H 0.42 4.87 8.30 -40.82 -0.34 4.53 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 38 H 0.14 2.99 5.63 -52.49 -0.30 2.69 16 39 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.13 2.91 6.23 -52.48 -0.33 2.58 16 41 H 0.11 0.71 8.11 -51.93 -0.42 0.28 16 42 H 0.09 0.99 6.67 -51.93 -0.35 0.64 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.11 1.32 5.01 -51.93 -0.26 1.06 16 LS Contribution 373.93 15.07 5.63 5.63 Total: -1.00 -31.14 373.93 -7.66 -38.80 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.92 Total: 10.17 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.22 Total: -10.50 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.55 Total: -40.45 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.15 Total: -20.72 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.86 Total: 17.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.14 -7.66 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850660929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.986 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds