Wall clock time and date at job start Tue Mar 31 2020 17:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47307 * 2 1 4 4 H 1.08995 * 109.47406 * 305.00645 * 3 2 1 5 5 N 1.46505 * 109.46776 * 65.00197 * 3 2 1 6 6 C 1.34779 * 119.99760 * 204.99555 * 5 3 2 7 7 O 1.21357 * 119.99930 * 0.02562 * 6 5 3 8 8 C 1.49353 * 119.99747 * 179.97438 * 6 5 3 9 9 O 1.21374 * 120.00400 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99747 * 180.02562 * 8 6 5 11 11 C 1.39724 * 119.99850 * 175.49824 * 10 8 6 12 12 C 1.39022 * 120.04175 * 214.86144 * 11 10 8 13 13 C 1.38142 * 120.05927 * 179.74455 * 12 11 10 14 14 C 1.38174 * 120.14698 * 0.55352 * 13 12 11 15 15 C 1.38916 * 120.07979 * 359.70690 * 14 13 12 16 16 O 1.35755 * 120.03042 * 180.02562 * 15 14 13 17 17 C 1.34831 * 117.00001 * 5.35511 * 16 15 14 18 18 H 1.07999 * 120.00024 * 354.97412 * 17 16 15 19 19 C 1.38651 * 120.00148 * 174.96858 * 17 16 15 20 20 N 1.31558 * 120.00249 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99799 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47124 * 89.99898 * 21 19 17 23 23 H 1.48503 * 109.47060 * 209.99953 * 21 19 17 24 24 H 1.48497 * 109.47148 * 330.00123 * 21 19 17 25 25 C 1.38759 * 119.94065 * 0.02562 * 15 14 13 26 26 C 1.53003 * 109.47224 * 184.99741 * 3 2 1 27 27 C 1.52992 * 117.50035 * 248.75098 * 26 3 2 28 28 C 1.52995 * 117.49822 * 180.08684 * 26 3 2 29 29 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47007 * 59.99215 * 1 2 3 31 31 H 1.09001 * 109.46922 * 300.00234 * 1 2 3 32 32 H 1.09000 * 109.46549 * 120.00511 * 2 1 3 33 33 H 1.09006 * 109.46568 * 240.00079 * 2 1 3 34 34 H 0.97000 * 120.00642 * 25.00009 * 5 3 2 35 35 H 0.97002 * 120.00173 * 355.50442 * 10 8 6 36 36 H 1.08000 * 119.96851 * 0.02562 * 12 11 10 37 37 H 1.08006 * 119.92405 * 180.28339 * 13 12 11 38 38 H 1.08000 * 119.96213 * 179.71994 * 14 13 12 39 39 H 0.96998 * 120.00071 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.07052 * 180.02562 * 25 15 14 41 41 H 1.09000 * 115.54484 * 34.42146 * 26 3 2 42 42 H 1.09000 * 117.49860 * 359.97438 * 27 26 3 43 43 H 1.09001 * 117.49580 * 145.02086 * 27 26 3 44 44 H 1.09003 * 117.50106 * 214.97857 * 28 26 3 45 45 H 1.09000 * 117.50080 * 0.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 1.5258 3.4383 1.2997 7 8 1.7323 4.1032 0.3057 8 6 1.1301 4.1059 2.5758 9 8 0.9232 3.4410 3.5699 10 7 1.0029 5.4469 2.6235 11 6 0.5422 6.0639 3.7894 12 6 -0.2539 7.2006 3.7074 13 6 -0.7140 7.8078 4.8597 14 6 -0.3753 7.2947 6.0972 15 6 0.4243 6.1623 6.1862 16 8 0.7560 5.6587 7.4025 17 6 0.1877 6.2366 8.4800 18 1 -0.4329 7.1121 8.3588 19 6 0.3999 5.7069 9.7436 20 7 -0.1550 6.2704 10.7949 21 14 1.4738 4.1928 9.9533 22 1 2.8832 4.6108 10.1634 23 1 1.0078 3.4144 11.1290 24 1 1.3841 3.3496 8.7342 25 6 0.8838 5.5463 5.0308 26 6 3.5649 1.4443 -0.1257 27 6 4.3734 1.9000 1.0906 28 6 4.2707 2.8016 -0.1422 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.4871 1.5660 2.0464 35 1 1.2311 5.9836 1.8484 36 1 -0.5167 7.6066 2.7417 37 1 -1.3361 8.6882 4.7933 38 1 -0.7329 7.7745 6.9963 39 1 -0.0063 5.9000 11.6789 40 1 1.5053 4.6655 5.0976 41 1 3.9867 0.6500 -0.7416 42 1 3.8191 2.1989 1.9802 43 1 5.3275 1.4059 1.2746 44 1 5.1573 2.9003 -0.7687 45 1 3.6489 3.6933 -0.0632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850660929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:32 Heat of formation + Delta-G solvation = -56.606637 kcal Electronic energy + Delta-G solvation = -28103.102632 eV Core-core repulsion = 24086.931639 eV Total energy + Delta-G solvation = -4016.170993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31360 -41.11944 -40.24023 -38.49906 -38.35345 -36.00669 -35.50214 -34.45323 -33.34970 -31.43991 -30.42943 -28.38345 -27.28692 -26.03715 -23.82444 -23.43942 -22.89932 -22.66565 -21.64838 -21.06492 -20.06945 -19.81088 -19.01650 -18.05921 -17.75238 -17.04177 -16.96836 -16.80766 -16.54106 -16.18378 -15.77207 -15.60835 -15.34714 -15.18448 -14.86585 -14.60679 -14.42774 -14.29367 -14.21244 -13.80788 -13.38071 -13.32685 -13.17720 -12.80749 -12.76866 -12.59811 -12.53422 -12.30605 -12.28488 -12.02567 -11.86019 -11.48091 -11.39227 -11.25438 -10.89547 -10.88642 -10.71214 -10.24964 -9.49571 -9.02330 -8.51680 -6.24137 -0.05887 0.55566 0.62064 1.15038 1.28850 1.32776 1.49770 1.98807 2.26428 2.42113 2.72416 2.86632 3.02933 3.08501 3.32499 3.59566 3.87343 3.99767 4.06260 4.18459 4.21285 4.30058 4.32977 4.35505 4.51327 4.53950 4.64056 4.71635 4.78174 4.79694 4.84293 4.96287 5.06391 5.13003 5.20367 5.21878 5.28789 5.29634 5.33620 5.35350 5.39491 5.63688 5.72871 5.84354 5.86576 6.14649 6.23290 6.63542 6.81132 6.83131 7.57226 8.59614 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.002876 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.305014 B = 9732.806892 C =10708.934941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C 0.171 3.829 4 H 0.092 0.908 5 N -0.681 5.681 6 C 0.522 3.478 7 O -0.523 6.523 8 C 0.497 3.503 9 O -0.523 6.523 10 N -0.626 5.626 11 C 0.173 3.827 12 C -0.189 4.189 13 C -0.050 4.050 14 C -0.242 4.242 15 C 0.136 3.864 16 O -0.245 6.245 17 C -0.398 4.398 18 H 0.089 0.911 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.271 1.271 25 C -0.197 4.197 26 C -0.156 4.156 27 C -0.185 4.185 28 C -0.196 4.196 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.417 0.583 35 H 0.434 0.566 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.117 0.883 39 H 0.285 0.715 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 -10.193 -26.624 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.068 3.932 4 H 0.110 0.890 5 N -0.333 5.333 6 C 0.302 3.698 7 O -0.400 6.400 8 C 0.279 3.721 9 O -0.398 6.398 10 N -0.274 5.274 11 C 0.079 3.921 12 C -0.210 4.210 13 C -0.069 4.069 14 C -0.262 4.262 15 C 0.086 3.914 16 O -0.153 6.153 17 C -0.475 4.475 18 H 0.106 0.894 19 C -0.184 4.184 20 N -0.560 5.560 21 Si 0.786 3.214 22 H -0.189 1.189 23 H -0.189 1.189 24 H -0.195 1.195 25 C -0.219 4.219 26 C -0.175 4.175 27 C -0.222 4.222 28 C -0.233 4.233 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.254 0.746 35 H 0.275 0.725 36 H 0.181 0.819 37 H 0.176 0.824 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.022 -10.440 -26.408 28.837 hybrid contribution 0.261 -0.132 1.043 1.083 sum 5.283 -10.572 -25.366 27.984 Atomic orbital electron populations 1.21814 0.95469 1.02507 1.01661 1.21786 0.96122 0.93107 1.04802 1.20889 0.92540 0.94589 0.85220 0.89023 1.45930 1.66444 1.05329 1.15643 1.19544 0.78714 0.84202 0.87335 1.90712 1.49352 1.64393 1.35512 1.20714 0.78539 0.83302 0.89537 1.90848 1.47796 1.64569 1.36635 1.42932 1.62891 1.06369 1.15210 1.17270 0.96316 0.94391 0.84138 1.20943 1.02002 0.97762 1.00253 1.21024 0.96872 0.98960 0.90015 1.21415 1.05603 0.99235 0.99907 1.19311 0.93969 0.92803 0.85290 1.83528 1.63077 1.56420 1.12259 1.20767 1.30379 1.12474 0.83836 0.89378 1.25183 0.98443 1.01346 0.93447 1.69711 1.44450 1.42430 0.99400 0.85327 0.79035 0.78895 0.78158 1.18919 1.18871 1.19535 1.20186 1.08189 1.03899 0.89598 1.22882 0.93187 0.99119 1.02341 1.22962 1.02073 1.04726 0.92428 1.23320 1.03356 0.95159 1.01452 0.91270 0.92526 0.93845 0.90411 0.87822 0.74579 0.72513 0.81904 0.82417 0.86516 0.90507 0.86269 0.84533 0.90551 0.87897 0.88100 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.80 71.98 0.71 -0.96 16 2 C -0.12 -1.05 5.45 30.59 0.17 -0.89 16 3 C 0.17 2.28 2.43 44.99 0.11 2.39 16 4 H 0.09 1.40 7.58 -2.39 -0.02 1.38 16 5 N -0.68 -12.06 3.06 -443.96 -1.36 -13.42 16 6 C 0.52 11.81 6.72 87.24 0.59 12.39 16 7 O -0.52 -12.49 13.51 -3.27 -0.04 -12.53 16 8 C 0.50 13.99 7.73 87.24 0.67 14.66 16 9 O -0.52 -18.38 13.91 -3.32 -0.05 -18.43 16 10 N -0.63 -16.60 5.32 -304.89 -1.62 -18.22 16 11 C 0.17 5.74 6.29 38.20 0.24 5.98 16 12 C -0.19 -5.37 9.97 22.44 0.22 -5.15 16 13 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 14 C -0.24 -10.44 9.17 22.42 0.21 -10.23 16 15 C 0.14 6.63 6.64 22.56 0.15 6.78 16 16 O -0.25 -13.89 8.58 -22.81 -0.20 -14.09 16 17 C -0.40 -23.80 9.95 67.92 0.68 -23.12 16 18 H 0.09 5.40 5.43 -2.91 -0.02 5.38 16 19 C 0.01 0.86 5.49 84.83 0.47 1.33 16 20 N -0.92 -55.22 13.96 21.61 0.30 -54.91 16 21 Si 0.96 46.86 28.62 68.60 1.96 48.82 16 22 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 25 C -0.20 -8.43 8.64 22.52 0.19 -8.24 16 26 C -0.16 -2.06 5.70 -10.80 -0.06 -2.12 16 27 C -0.18 -3.09 9.74 30.62 0.30 -2.79 16 28 C -0.20 -3.39 9.83 30.62 0.30 -3.09 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.59 7.75 -2.39 -0.02 0.57 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.42 7.26 8.07 -92.71 -0.75 6.51 16 35 H 0.43 8.78 8.30 -92.71 -0.77 8.01 16 36 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.12 5.45 5.63 -2.91 -0.02 5.43 16 39 H 0.29 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.12 5.40 6.23 -2.91 -0.02 5.38 16 41 H 0.14 1.18 8.11 -2.39 -0.02 1.16 16 42 H 0.08 1.55 6.67 -2.39 -0.02 1.54 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 2.07 5.01 -2.39 -0.01 2.05 16 Total: -1.00 -72.03 373.93 3.69 -68.34 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.46 Total: 28.90 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.16 Total: -14.46 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.68 Total: -86.55 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.29 Total: -45.04 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.96 Total: 48.82 kcal Total: -72.03 3.69 -68.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850660929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.730 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds