Wall clock time and date at job start Tue Mar 31 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47314 * 2 1 4 4 N 1.46504 * 109.46915 * 120.00138 * 2 1 3 5 5 C 1.34773 * 119.99904 * 155.00115 * 4 2 1 6 6 O 1.21507 * 120.00221 * 359.97438 * 5 4 2 7 7 O 1.34644 * 119.99755 * 179.97438 * 5 4 2 8 8 C 1.45203 * 116.99927 * 179.97438 * 7 5 4 9 9 C 1.53491 * 114.20817 * 209.99895 * 8 7 5 10 10 N 1.47059 * 87.98661 * 220.15090 * 9 8 7 11 11 C 1.34783 * 136.05570 * 207.08297 * 10 9 8 12 12 O 1.21604 * 120.00320 * 355.81998 * 11 10 9 13 13 C 1.47439 * 119.99639 * 175.81384 * 11 10 9 14 14 C 1.39223 * 120.28024 * 25.39562 * 13 11 10 15 15 C 1.38221 * 120.08609 * 179.97438 * 14 13 11 16 16 C 1.38829 * 120.67905 * 0.02562 * 15 14 13 17 17 C 1.37592 * 120.57205 * 0.02562 * 16 15 14 18 18 C 1.40708 * 119.87877 * 359.97438 * 17 16 15 19 19 C 1.40890 * 120.32654 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99894 * 214.17880 * 19 18 17 21 21 C 1.40270 * 120.00381 * 34.17624 * 19 18 17 22 22 N 1.30627 * 119.99844 * 5.85515 * 21 19 18 23 23 Si 1.86797 * 120.00306 * 185.85664 * 21 19 18 24 24 H 1.48496 * 109.47391 * 89.99510 * 23 21 19 25 25 H 1.48503 * 109.47272 * 210.00089 * 23 21 19 26 26 H 1.48504 * 109.47175 * 329.99985 * 23 21 19 27 27 C 1.47062 * 87.88832 * 27.34334 * 10 9 8 28 28 H 1.08997 * 109.46944 * 300.00298 * 1 2 3 29 29 H 1.09000 * 109.46947 * 60.00256 * 1 2 3 30 30 H 1.08995 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46944 * 239.99701 * 2 1 3 32 32 H 1.09000 * 109.46904 * 299.99770 * 3 2 1 33 33 H 1.08997 * 109.47359 * 59.99955 * 3 2 1 34 34 H 1.08997 * 109.46872 * 180.02562 * 3 2 1 35 35 H 0.97000 * 119.99610 * 334.99039 * 4 2 1 36 36 H 1.09003 * 113.28155 * 343.06993 * 8 7 5 37 37 H 1.09004 * 113.46425 * 105.36555 * 9 8 7 38 38 H 1.08996 * 113.46965 * 334.93396 * 9 8 7 39 39 H 1.08000 * 119.95783 * 359.97438 * 14 13 11 40 40 H 1.08002 * 119.66316 * 180.02562 * 15 14 13 41 41 H 1.08007 * 119.71235 * 179.73032 * 16 15 14 42 42 H 1.07996 * 120.06048 * 179.97438 * 17 16 15 43 43 H 0.96997 * 119.99968 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.46794 * 87.43116 * 27 10 9 45 45 H 1.09001 * 113.47312 * 217.87881 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9368 -1.1994 0.2006 7 8 3.6892 -1.8935 2.2940 8 6 5.0142 -2.4829 2.2202 9 6 5.1993 -3.7273 3.0994 10 7 6.5405 -3.2264 3.4358 11 6 7.7148 -3.7723 3.8092 12 8 7.7933 -4.9696 4.0071 13 6 8.9045 -2.9178 3.9776 14 6 8.7610 -1.5658 4.2771 15 6 9.8790 -0.7685 4.4347 16 6 11.1538 -1.3009 4.2968 17 6 11.3275 -2.6331 4.0000 18 6 10.2058 -3.4665 3.8346 19 6 10.3728 -4.8321 3.5311 20 1 9.6602 -5.3347 2.8938 21 6 11.4645 -5.5391 4.0565 22 7 12.2616 -4.9644 4.9171 23 14 11.7783 -7.3023 3.5256 24 1 12.6646 -7.3103 2.3342 25 1 12.4319 -8.0441 4.6338 26 1 10.4879 -7.9545 3.1869 27 6 6.0346 -1.8673 3.1918 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.4622 -0.7386 1.9895 36 1 5.3779 -2.5988 1.1992 37 1 5.2131 -4.6596 2.5347 38 1 4.5219 -3.7607 3.9526 39 1 7.7748 -1.1394 4.3866 40 1 9.7598 0.2793 4.6674 41 1 12.0165 -0.6627 4.4189 42 1 12.3229 -3.0385 3.8942 43 1 13.0167 -5.4531 5.2802 44 1 5.5772 -1.4103 4.0693 45 1 6.7600 -1.2147 2.7059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868355052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:03 Heat of formation + Delta-G solvation = -52.298220 kcal Electronic energy + Delta-G solvation = -27893.991105 eV Core-core repulsion = 23878.006939 eV Total energy + Delta-G solvation = -4015.984166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.86978 -39.70450 -37.99799 -36.98336 -36.23840 -35.54377 -33.70304 -31.82207 -30.34306 -29.77727 -28.28452 -27.64276 -25.93078 -25.37150 -23.63198 -22.20927 -21.13202 -20.91973 -20.65920 -19.22209 -18.58447 -17.31266 -17.16731 -16.40649 -16.29403 -15.89366 -15.42319 -15.04631 -14.74716 -14.54499 -14.29914 -13.80689 -13.58892 -13.32894 -13.25927 -12.84468 -12.75333 -12.68584 -12.62291 -12.55015 -12.25241 -11.90405 -11.78844 -11.62243 -11.46789 -11.36976 -11.15043 -11.05324 -10.77521 -10.76214 -10.50067 -10.22221 -9.98335 -9.64610 -9.53481 -9.29659 -8.69070 -8.25823 -7.60490 -7.38904 -6.77990 -4.41544 1.89563 2.34582 2.65025 2.80706 3.10420 3.16051 3.24954 3.33002 3.86421 3.98023 4.10745 4.25869 4.41384 4.61765 4.64637 4.81080 4.86150 5.11499 5.15053 5.25012 5.36426 5.39532 5.47443 5.55044 5.56842 5.61706 5.65172 5.79443 5.80499 5.88454 6.01675 6.10084 6.24869 6.34772 6.44910 6.69590 6.96444 7.09012 7.15217 7.20887 7.44432 7.62413 7.89202 7.96639 8.14134 8.15585 8.31087 8.60037 8.77765 8.85049 9.20941 10.16161 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.002515 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.737435 B =11131.151853 C =12014.991003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 C -0.168 4.168 4 N -0.708 5.708 5 C 0.647 3.353 6 O -0.568 6.568 7 O -0.355 6.355 8 C 0.064 3.936 9 C 0.109 3.891 10 N -0.648 5.648 11 C 0.606 3.394 12 O -0.524 6.524 13 C -0.253 4.253 14 C -0.061 4.061 15 C -0.245 4.245 16 C -0.094 4.094 17 C -0.148 4.148 18 C 0.147 3.853 19 C -0.417 4.417 20 H 0.089 0.911 21 C 0.071 3.929 22 N -0.795 5.795 23 Si 0.917 3.083 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.258 1.258 27 C 0.094 3.906 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.406 0.594 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.282 0.718 44 H 0.087 0.913 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.222 9.576 -6.262 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.368 5.368 5 C 0.400 3.600 6 O -0.456 6.456 7 O -0.267 6.267 8 C 0.008 3.992 9 C -0.015 4.015 10 N -0.389 5.389 11 C 0.403 3.597 12 O -0.400 6.400 13 C -0.258 4.258 14 C -0.080 4.080 15 C -0.264 4.264 16 C -0.113 4.113 17 C -0.167 4.167 18 C 0.143 3.857 19 C -0.446 4.446 20 H 0.107 0.893 21 C -0.147 4.147 22 N -0.420 5.420 23 Si 0.741 3.259 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.031 4.031 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.240 0.760 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.313 8.714 -6.402 21.266 hybrid contribution -0.091 -0.568 0.410 0.706 sum -18.404 8.146 -5.992 20.999 Atomic orbital electron populations 1.22094 0.93595 1.02953 1.03234 1.20969 0.93940 0.92845 0.87281 1.22244 1.02581 0.95490 1.02301 1.44820 1.15545 1.58347 1.18091 1.18186 0.82516 0.77383 0.81917 1.91007 1.56954 1.63703 1.33915 1.86285 1.35687 1.66724 1.38034 1.24951 0.78181 0.94537 1.01569 1.22965 0.84719 0.96543 0.97265 1.49351 1.08952 1.08549 1.72063 1.18120 0.79790 0.87344 0.74484 1.90738 1.83250 1.15634 1.50403 1.19343 0.91950 0.93601 1.20927 1.20832 0.96858 0.92760 0.97547 1.20306 0.92836 0.98054 1.15220 1.20836 0.95639 0.95558 0.99236 1.21389 0.99244 0.91730 1.04358 1.17447 0.88904 0.93163 0.86152 1.19788 1.06167 0.94221 1.24402 0.89304 1.26021 0.94101 1.01220 0.93320 1.69686 1.12459 1.38603 1.21243 0.86144 0.79608 0.81201 0.78917 1.19311 1.20178 1.18181 1.23394 0.94096 0.88079 0.97503 0.91804 0.90478 0.91725 0.89016 0.91299 0.92263 0.91715 0.75958 0.85270 0.89757 0.89560 0.88731 0.89047 0.88983 0.85984 0.90668 0.89478 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 9.38 37.16 0.35 -0.30 16 2 C 0.15 1.06 3.18 -67.93 -0.22 0.84 16 3 C -0.17 -1.14 9.48 37.16 0.35 -0.78 16 4 N -0.71 -5.84 5.08 -58.73 -0.30 -6.14 16 5 C 0.65 7.89 8.71 54.05 0.47 8.37 16 6 O -0.57 -8.79 15.22 -19.28 -0.29 -9.08 16 7 O -0.35 -4.30 10.33 -40.34 -0.42 -4.72 16 8 C 0.06 0.88 4.64 -26.08 -0.12 0.76 16 9 C 0.11 1.60 8.46 -8.52 -0.07 1.53 16 10 N -0.65 -12.13 3.67 -186.38 -0.68 -12.82 16 11 C 0.61 14.55 7.63 -12.51 -0.10 14.45 16 12 O -0.52 -14.33 15.15 5.27 0.08 -14.25 16 13 C -0.25 -6.33 5.89 -104.37 -0.61 -6.95 16 14 C -0.06 -1.34 8.74 -39.22 -0.34 -1.69 16 15 C -0.24 -5.27 10.03 -39.37 -0.39 -5.67 16 16 C -0.09 -2.13 10.01 -39.60 -0.40 -2.53 16 17 C -0.15 -3.79 8.62 -38.88 -0.34 -4.12 16 18 C 0.15 4.00 5.52 -106.54 -0.59 3.41 16 19 C -0.42 -11.58 7.51 -37.82 -0.28 -11.86 16 20 H 0.09 2.54 6.57 -52.48 -0.34 2.19 16 21 C 0.07 1.86 5.31 -17.30 -0.09 1.76 16 22 N -0.79 -20.79 10.97 55.56 0.61 -20.18 16 23 Si 0.92 19.89 29.57 -169.99 -5.03 14.87 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 27 C 0.09 1.38 6.07 -8.38 -0.05 1.33 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.79 7.58 -51.93 -0.39 0.39 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.41 2.36 8.71 -40.82 -0.36 2.01 16 36 H 0.13 1.90 7.06 -51.93 -0.37 1.54 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.77 5.41 -52.49 -0.28 1.49 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.12 3.18 6.47 -52.49 -0.34 2.84 16 43 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.09 1.36 7.12 -51.93 -0.37 0.99 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -32.80 377.11 -9.02 -41.82 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.24 Total: 6.27 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.43 Total: -1.45 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.37 Total: -39.14 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.63 Total: -28.05 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.80 -9.02 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868355052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds