Wall clock time and date at job start Tue Mar 31 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47314 * 2 1 4 4 N 1.46504 * 109.46915 * 120.00138 * 2 1 3 5 5 C 1.34773 * 119.99904 * 155.00115 * 4 2 1 6 6 O 1.21507 * 120.00221 * 359.97438 * 5 4 2 7 7 O 1.34644 * 119.99755 * 179.97438 * 5 4 2 8 8 C 1.45203 * 116.99927 * 179.97438 * 7 5 4 9 9 C 1.53491 * 114.20817 * 209.99895 * 8 7 5 10 10 N 1.47059 * 87.98661 * 220.15090 * 9 8 7 11 11 C 1.34783 * 136.05570 * 207.08297 * 10 9 8 12 12 O 1.21604 * 120.00320 * 355.81998 * 11 10 9 13 13 C 1.47439 * 119.99639 * 175.81384 * 11 10 9 14 14 C 1.39223 * 120.28024 * 25.39562 * 13 11 10 15 15 C 1.38221 * 120.08609 * 179.97438 * 14 13 11 16 16 C 1.38829 * 120.67905 * 0.02562 * 15 14 13 17 17 C 1.37592 * 120.57205 * 0.02562 * 16 15 14 18 18 C 1.40708 * 119.87877 * 359.97438 * 17 16 15 19 19 C 1.40890 * 120.32654 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99894 * 214.17880 * 19 18 17 21 21 C 1.40270 * 120.00381 * 34.17624 * 19 18 17 22 22 N 1.30627 * 119.99844 * 5.85515 * 21 19 18 23 23 Si 1.86797 * 120.00306 * 185.85664 * 21 19 18 24 24 H 1.48496 * 109.47391 * 89.99510 * 23 21 19 25 25 H 1.48503 * 109.47272 * 210.00089 * 23 21 19 26 26 H 1.48504 * 109.47175 * 329.99985 * 23 21 19 27 27 C 1.47062 * 87.88832 * 27.34334 * 10 9 8 28 28 H 1.08997 * 109.46944 * 300.00298 * 1 2 3 29 29 H 1.09000 * 109.46947 * 60.00256 * 1 2 3 30 30 H 1.08995 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46944 * 239.99701 * 2 1 3 32 32 H 1.09000 * 109.46904 * 299.99770 * 3 2 1 33 33 H 1.08997 * 109.47359 * 59.99955 * 3 2 1 34 34 H 1.08997 * 109.46872 * 180.02562 * 3 2 1 35 35 H 0.97000 * 119.99610 * 334.99039 * 4 2 1 36 36 H 1.09003 * 113.28155 * 343.06993 * 8 7 5 37 37 H 1.09004 * 113.46425 * 105.36555 * 9 8 7 38 38 H 1.08996 * 113.46965 * 334.93396 * 9 8 7 39 39 H 1.08000 * 119.95783 * 359.97438 * 14 13 11 40 40 H 1.08002 * 119.66316 * 180.02562 * 15 14 13 41 41 H 1.08007 * 119.71235 * 179.73032 * 16 15 14 42 42 H 1.07996 * 120.06048 * 179.97438 * 17 16 15 43 43 H 0.96997 * 119.99968 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.46794 * 87.43116 * 27 10 9 45 45 H 1.09001 * 113.47312 * 217.87881 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9368 -1.1994 0.2006 7 8 3.6892 -1.8935 2.2940 8 6 5.0142 -2.4829 2.2202 9 6 5.1993 -3.7273 3.0994 10 7 6.5405 -3.2264 3.4358 11 6 7.7148 -3.7723 3.8092 12 8 7.7933 -4.9696 4.0071 13 6 8.9045 -2.9178 3.9776 14 6 8.7610 -1.5658 4.2771 15 6 9.8790 -0.7685 4.4347 16 6 11.1538 -1.3009 4.2968 17 6 11.3275 -2.6331 4.0000 18 6 10.2058 -3.4665 3.8346 19 6 10.3728 -4.8321 3.5311 20 1 9.6602 -5.3347 2.8938 21 6 11.4645 -5.5391 4.0565 22 7 12.2616 -4.9644 4.9171 23 14 11.7783 -7.3023 3.5256 24 1 12.6646 -7.3103 2.3342 25 1 12.4319 -8.0441 4.6338 26 1 10.4879 -7.9545 3.1869 27 6 6.0346 -1.8673 3.1918 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.4622 -0.7386 1.9895 36 1 5.3779 -2.5988 1.1992 37 1 5.2131 -4.6596 2.5347 38 1 4.5219 -3.7607 3.9526 39 1 7.7748 -1.1394 4.3866 40 1 9.7598 0.2793 4.6674 41 1 12.0165 -0.6627 4.4189 42 1 12.3229 -3.0385 3.8942 43 1 13.0167 -5.4531 5.2802 44 1 5.5772 -1.4103 4.0693 45 1 6.7600 -1.2147 2.7059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868355052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:02 Heat of formation + Delta-G solvation = -74.264285 kcal Electronic energy + Delta-G solvation = -27894.943625 eV Core-core repulsion = 23878.006939 eV Total energy + Delta-G solvation = -4016.936686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.99931 -41.03750 -39.53919 -38.36732 -37.59166 -36.59173 -35.59617 -32.58463 -32.07805 -31.63598 -29.81827 -28.07427 -27.33886 -27.10691 -24.87210 -23.55605 -22.76054 -22.11988 -21.74344 -20.37438 -19.93969 -19.16874 -18.30304 -17.84440 -17.54836 -17.14341 -16.84445 -16.58442 -16.04477 -15.82015 -15.39798 -15.21129 -14.99229 -14.76693 -14.46625 -14.42477 -14.12965 -13.81903 -13.72747 -13.49359 -13.20519 -13.15407 -13.03336 -12.87544 -12.82621 -12.75247 -12.61127 -12.31099 -12.28810 -11.93488 -11.88215 -11.80164 -11.58693 -11.27165 -11.15809 -10.53954 -10.29049 -9.82320 -9.43172 -9.27089 -8.67755 -6.41108 0.48866 0.92269 0.98803 1.31367 1.43151 1.49255 1.67488 1.94138 2.16988 2.19433 2.73231 3.04584 3.11607 3.63283 3.65147 3.88606 3.93399 4.05254 4.13961 4.32519 4.32935 4.40273 4.42194 4.50249 4.55322 4.58727 4.71337 4.76684 4.79018 4.96280 5.01122 5.04809 5.08323 5.20847 5.27156 5.31594 5.35741 5.38977 5.48617 5.58042 5.80107 6.02481 6.06666 6.28123 6.38169 6.55635 6.72673 6.84453 6.91845 7.26682 7.42395 8.28664 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.002515 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.737435 B =11131.151853 C =12014.991003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 C -0.164 4.164 4 N -0.689 5.689 5 C 0.642 3.358 6 O -0.605 6.605 7 O -0.343 6.343 8 C 0.083 3.917 9 C 0.108 3.892 10 N -0.655 5.655 11 C 0.600 3.400 12 O -0.574 6.574 13 C -0.272 4.272 14 C -0.059 4.059 15 C -0.234 4.234 16 C -0.090 4.090 17 C -0.175 4.175 18 C 0.115 3.885 19 C -0.456 4.456 20 H 0.064 0.936 21 C 0.032 3.968 22 N -0.823 5.823 23 Si 0.980 3.020 24 H -0.252 1.252 25 H -0.261 1.261 26 H -0.275 1.275 27 C 0.094 3.906 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.420 0.580 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.290 0.710 44 H 0.118 0.882 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.642 11.963 -5.855 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.349 5.349 5 C 0.394 3.606 6 O -0.496 6.496 7 O -0.255 6.255 8 C 0.025 3.975 9 C -0.014 4.014 10 N -0.393 5.393 11 C 0.397 3.603 12 O -0.454 6.454 13 C -0.277 4.277 14 C -0.078 4.078 15 C -0.253 4.253 16 C -0.109 4.109 17 C -0.195 4.195 18 C 0.111 3.889 19 C -0.485 4.485 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.450 5.450 23 Si 0.801 3.199 24 H -0.176 1.176 25 H -0.185 1.185 26 H -0.200 1.200 27 C -0.029 4.029 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.258 0.742 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.136 0.864 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.805 11.173 -5.994 24.364 hybrid contribution 0.430 -1.054 0.257 1.167 sum -20.374 10.120 -5.737 23.461 Atomic orbital electron populations 1.22054 0.90790 1.03495 1.04657 1.21155 0.95973 0.92477 0.85908 1.22215 1.00627 0.95590 1.03816 1.44892 1.14049 1.56844 1.19151 1.18455 0.83331 0.77462 0.81310 1.90995 1.58258 1.65176 1.35145 1.86274 1.34533 1.66705 1.37998 1.24423 0.78887 0.93733 1.00426 1.23195 0.82866 0.96958 0.98399 1.49097 1.09002 1.11153 1.70058 1.17997 0.81141 0.86667 0.74529 1.90695 1.84465 1.17442 1.52769 1.19714 0.91922 0.95297 1.20771 1.21207 0.98982 0.91443 0.96135 1.20825 0.91903 0.99965 1.12627 1.21218 0.97659 0.94628 0.97389 1.21341 0.98250 0.93158 1.06722 1.17833 0.90543 0.93507 0.87020 1.19734 1.07205 0.95171 1.26403 0.91830 1.26723 0.93591 1.04835 0.93098 1.69712 1.13109 1.40094 1.22037 0.85243 0.78795 0.76440 0.79451 1.17596 1.18487 1.19993 1.23656 0.94105 0.86238 0.98919 0.90284 0.89135 0.91639 0.91059 0.89664 0.90931 0.94643 0.74219 0.86577 0.90118 0.86918 0.85161 0.84829 0.85939 0.87579 0.89920 0.86390 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.38 71.98 0.68 -0.10 16 2 C 0.15 1.77 3.18 44.99 0.14 1.91 16 3 C -0.16 -1.91 9.48 71.98 0.68 -1.23 16 4 N -0.69 -9.85 5.08 -570.12 -2.90 -12.75 16 5 C 0.64 14.69 8.71 129.79 1.13 15.82 16 6 O -0.60 -18.54 15.22 19.82 0.30 -18.24 16 7 O -0.34 -7.53 10.33 -55.54 -0.57 -8.10 16 8 C 0.08 2.13 4.64 31.02 0.14 2.28 16 9 C 0.11 3.07 8.46 83.18 0.70 3.77 16 10 N -0.65 -24.13 3.67 -862.31 -3.17 -27.30 16 11 C 0.60 29.60 7.63 86.67 0.66 30.27 16 12 O -0.57 -32.98 15.15 -4.04 -0.06 -33.04 16 13 C -0.27 -13.84 5.89 -19.70 -0.12 -13.95 16 14 C -0.06 -2.48 8.74 22.50 0.20 -2.28 16 15 C -0.23 -9.37 10.03 22.41 0.22 -9.14 16 16 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 17 C -0.18 -9.22 8.62 22.72 0.20 -9.02 16 18 C 0.11 6.49 5.52 -21.11 -0.12 6.38 16 19 C -0.46 -26.93 7.51 23.41 0.18 -26.76 16 20 H 0.06 3.94 6.57 -2.91 -0.02 3.92 16 21 C 0.03 1.75 5.31 85.37 0.45 2.20 16 22 N -0.82 -44.82 10.97 21.88 0.24 -44.58 16 23 Si 0.98 42.67 29.57 68.60 2.03 44.70 16 24 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 C 0.09 2.54 6.07 83.27 0.51 3.05 16 28 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 1.18 7.58 -2.39 -0.02 1.16 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.42 3.58 8.71 -92.71 -0.81 2.78 16 36 H 0.12 3.40 7.06 -2.39 -0.02 3.38 16 37 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.13 4.41 5.41 -2.91 -0.02 4.40 16 40 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 41 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.11 5.80 6.47 -2.91 -0.02 5.78 16 43 H 0.29 14.21 8.29 -92.71 -0.77 13.45 16 44 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.09 2.49 7.12 -2.39 -0.02 2.47 16 Total: -1.00 -76.72 377.11 1.97 -74.76 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.22 Total: 25.14 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.88 Total: -0.58 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -5.83 Total: -84.63 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -0.33 Total: -59.38 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -76.72 1.97 -74.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868355052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.492 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds