Wall clock time and date at job start Tue Mar 31 2020 17:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 N 1.46495 * 109.47419 * 120.00207 * 2 1 3 5 5 C 1.34415 * 124.35068 * 300.02705 * 4 2 1 6 6 O 1.21284 * 124.94177 * 359.53067 * 5 4 2 7 7 C 1.51274 * 110.12027 * 179.56792 * 5 4 2 8 8 C 1.54634 * 104.19594 * 343.74865 * 7 5 4 9 9 C 1.46761 * 124.34962 * 119.99689 * 4 2 1 10 10 H 1.09003 * 110.24643 * 78.04192 * 9 4 2 11 11 C 1.50699 * 110.24681 * 316.12891 * 9 4 2 12 12 O 1.21283 * 120.00259 * 359.97438 * 11 9 4 13 13 N 1.34780 * 119.99774 * 180.02562 * 11 9 4 14 14 C 1.39924 * 119.99902 * 174.79375 * 13 11 9 15 15 C 1.38965 * 120.03412 * 146.39811 * 14 13 11 16 16 C 1.38160 * 120.06721 * 179.97438 * 15 14 13 17 17 C 1.38170 * 120.13599 * 0.04811 * 16 15 14 18 18 C 1.38901 * 120.07095 * 359.95772 * 17 16 15 19 19 O 1.35759 * 120.03084 * 180.02562 * 18 17 16 20 20 C 1.34831 * 117.00166 * 5.91337 * 19 18 17 21 21 H 1.07998 * 119.99504 * 5.40966 * 20 19 18 22 22 C 1.38648 * 120.00100 * 185.40478 * 20 19 18 23 23 N 1.31561 * 120.00136 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99843 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47073 * 90.00615 * 24 22 20 26 26 H 1.48501 * 109.47389 * 209.99933 * 24 22 20 27 27 H 1.48496 * 109.47423 * 330.00362 * 24 22 20 28 28 C 1.38714 * 120.03726 * 326.13304 * 14 13 11 29 29 H 1.09000 * 109.46793 * 299.99945 * 1 2 3 30 30 H 1.09002 * 109.47245 * 59.99938 * 1 2 3 31 31 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46992 * 240.00781 * 2 1 3 33 33 H 1.09003 * 109.46823 * 60.00038 * 3 2 1 34 34 H 1.09000 * 109.47259 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47113 * 300.00143 * 3 2 1 36 36 H 1.08999 * 110.48958 * 102.42246 * 7 5 4 37 37 H 1.08996 * 110.49266 * 225.06939 * 7 5 4 38 38 H 1.08991 * 110.97319 * 142.91335 * 8 7 5 39 39 H 1.09001 * 110.96475 * 266.68027 * 8 7 5 40 40 H 0.97002 * 120.00347 * 354.79201 * 13 11 9 41 41 H 1.07998 * 119.96928 * 0.02562 * 15 14 13 42 42 H 1.07995 * 119.93025 * 180.02562 * 16 15 14 43 43 H 1.08007 * 119.96108 * 179.97438 * 17 16 15 44 44 H 0.97000 * 119.99983 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.06350 * 359.97360 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7477 -0.3087 2.4561 6 8 1.0761 0.6541 2.7610 7 6 2.4032 -1.2539 3.4385 8 6 2.7605 -2.4957 2.5893 9 6 2.8656 -1.8888 1.1726 10 1 3.8983 -1.6164 0.9546 11 6 2.3571 -2.8669 0.1451 12 8 1.3752 -2.5983 -0.5142 13 7 2.9929 -4.0408 -0.0403 14 6 2.4600 -4.9946 -0.9146 15 6 3.3075 -5.8152 -1.6491 16 6 2.7821 -6.7575 -2.5121 17 6 1.4132 -6.8864 -2.6485 18 6 0.5609 -6.0691 -1.9172 19 8 -0.7840 -6.1968 -2.0514 20 6 -1.2290 -7.2148 -2.8154 21 1 -0.5306 -7.9347 -3.2158 22 6 -2.5832 -7.3374 -3.0867 23 7 -3.0174 -8.3310 -3.8317 24 14 -3.7911 -6.0926 -2.3933 25 1 -3.9536 -4.9721 -3.3543 26 1 -5.1048 -6.7484 -2.1711 27 1 -3.2754 -5.5678 -1.1035 28 6 1.0853 -5.1257 -1.0449 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 3.3045 -0.8053 3.8562 37 1 1.7065 -1.5224 4.2326 38 1 3.7135 -2.9217 2.9028 39 1 1.9672 -3.2417 2.6362 40 1 3.8198 -4.2245 0.4322 41 1 4.3779 -5.7168 -1.5446 42 1 3.4427 -7.3944 -3.0815 43 1 1.0055 -7.6237 -3.3243 44 1 -3.9648 -8.4170 -4.0212 45 1 0.4246 -4.4923 -0.4716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874071833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:49 Heat of formation + Delta-G solvation = -58.989529 kcal Electronic energy + Delta-G solvation = -28867.300581 eV Core-core repulsion = 24851.026259 eV Total energy + Delta-G solvation = -4016.274322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38295 -39.88442 -38.75960 -36.95454 -36.21741 -35.32075 -34.18405 -32.40419 -30.30273 -30.03637 -29.29357 -27.76245 -27.15262 -25.25559 -23.45831 -22.57333 -22.41726 -21.39526 -20.44107 -19.05124 -18.15312 -17.87507 -17.50592 -16.99991 -15.91695 -15.79186 -15.36609 -15.24948 -15.14687 -14.57358 -14.20783 -14.12278 -14.00626 -13.87050 -13.74161 -13.59645 -13.23347 -12.97985 -12.74903 -12.53140 -12.32477 -12.26177 -12.09903 -11.96628 -11.73696 -11.48217 -11.32335 -11.21637 -11.10623 -11.01504 -10.86710 -10.27306 -10.06568 -9.89975 -9.67869 -9.40444 -8.89262 -8.88357 -7.89328 -7.38571 -6.43893 -4.10649 1.75914 2.15661 2.33742 2.56498 2.62183 3.05021 3.22796 3.27931 3.43072 3.91753 3.99620 4.23904 4.27796 4.42062 4.52242 4.65313 4.86852 4.91035 4.94694 5.07220 5.15423 5.23447 5.25957 5.38171 5.48872 5.51638 5.58023 5.63192 5.69176 5.74457 5.94482 5.97505 6.03799 6.08363 6.17808 6.36613 6.39715 6.52447 6.68451 6.82665 6.94484 7.05135 7.25827 7.44038 7.50925 7.75944 7.96383 7.99586 8.09545 8.91542 9.53779 10.63428 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003466 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.054228 B = 8076.154213 C = 9351.345602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 C -0.168 4.168 4 N -0.594 5.594 5 C 0.520 3.480 6 O -0.525 6.525 7 C -0.155 4.155 8 C -0.124 4.124 9 C 0.114 3.886 10 H 0.108 0.892 11 C 0.499 3.501 12 O -0.493 6.493 13 N -0.664 5.664 14 C 0.175 3.825 15 C -0.227 4.227 16 C -0.059 4.059 17 C -0.231 4.231 18 C 0.174 3.826 19 O -0.213 6.213 20 C -0.389 4.389 21 H 0.107 0.893 22 C 0.065 3.935 23 N -0.878 5.878 24 Si 0.903 3.097 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.187 4.187 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.407 0.593 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.134 0.866 44 H 0.280 0.720 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.980 11.987 11.716 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 C -0.226 4.226 4 N -0.328 5.328 5 C 0.308 3.692 6 O -0.401 6.401 7 C -0.195 4.195 8 C -0.162 4.162 9 C 0.006 3.994 10 H 0.125 0.875 11 C 0.283 3.717 12 O -0.366 6.366 13 N -0.310 5.310 14 C 0.082 3.918 15 C -0.248 4.248 16 C -0.078 4.078 17 C -0.250 4.250 18 C 0.121 3.879 19 O -0.117 6.117 20 C -0.465 4.465 21 H 0.125 0.875 22 C -0.138 4.138 23 N -0.515 5.515 24 Si 0.729 3.271 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.183 1.183 28 C -0.208 4.208 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.242 0.758 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.152 0.848 44 H 0.090 0.910 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.450 12.816 11.348 23.059 hybrid contribution -0.035 0.062 0.150 0.166 sum 15.415 12.877 11.497 23.144 Atomic orbital electron populations 1.22094 0.94242 1.03416 1.02151 1.20985 0.95216 0.91712 0.86353 1.22230 1.00794 0.96326 1.03216 1.48202 1.50634 1.27031 1.06918 1.20776 0.79766 0.85182 0.83494 1.90708 1.39264 1.28955 1.81187 1.22381 1.03148 0.95334 0.98618 1.22659 1.04698 0.97875 0.90993 1.21593 0.95976 0.85983 0.95859 0.87472 1.20757 0.84526 0.82255 0.84128 1.90813 1.24898 1.75328 1.45526 1.43327 1.27316 1.15448 1.44876 1.17099 0.91680 0.90423 0.92623 1.20326 0.97859 1.02952 1.03622 1.20575 0.94525 0.96381 0.96300 1.21318 0.93243 1.04922 1.05538 1.18853 0.83951 0.92570 0.92575 1.83604 1.16929 1.48354 1.62824 1.20772 0.94000 1.02769 1.28953 0.87529 1.24451 0.96706 0.97155 0.95504 1.69645 1.16338 1.29964 1.35579 0.86209 0.79361 0.80748 0.80818 1.19798 1.20712 1.18311 1.19979 0.93221 1.02974 1.04635 0.91930 0.91904 0.91150 0.88687 0.91202 0.92875 0.91425 0.87481 0.87616 0.88001 0.89067 0.75769 0.87119 0.86694 0.84794 0.90996 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.03 37.16 0.34 -1.92 16 2 C 0.16 1.95 2.38 -67.93 -0.16 1.79 16 3 C -0.17 -1.78 9.20 37.16 0.34 -1.44 16 4 N -0.59 -6.59 2.58 -158.68 -0.41 -7.00 16 5 C 0.52 6.06 7.41 -10.87 -0.08 5.98 16 6 O -0.53 -8.00 15.12 5.55 0.08 -7.91 16 7 C -0.15 -1.08 6.86 -26.74 -0.18 -1.26 16 8 C -0.12 -0.73 6.65 -25.09 -0.17 -0.89 16 9 C 0.11 0.95 3.70 -68.16 -0.25 0.69 16 10 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 11 C 0.50 6.05 6.56 -10.98 -0.07 5.98 16 12 O -0.49 -8.29 10.66 5.55 0.06 -8.23 16 13 N -0.66 -7.42 5.31 -9.88 -0.05 -7.47 16 14 C 0.17 2.79 6.27 -83.72 -0.52 2.27 16 15 C -0.23 -3.39 9.96 -39.34 -0.39 -3.79 16 16 C -0.06 -0.99 10.03 -39.64 -0.40 -1.39 16 17 C -0.23 -4.83 9.13 -39.36 -0.36 -5.18 16 18 C 0.17 4.02 6.64 -39.14 -0.26 3.76 16 19 O -0.21 -5.70 8.58 0.02 0.00 -5.70 16 20 C -0.39 -10.98 9.90 30.88 0.31 -10.68 16 21 H 0.11 3.03 5.53 -52.49 -0.29 2.74 16 22 C 0.07 1.85 5.49 -17.52 -0.10 1.75 16 23 N -0.88 -25.33 13.96 55.48 0.77 -24.56 16 24 Si 0.90 22.19 28.62 -169.99 -4.86 17.32 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.26 -6.47 7.11 56.52 0.40 -6.07 16 28 C -0.19 -3.80 8.60 -39.21 -0.34 -4.13 16 29 H 0.06 0.93 6.80 -51.93 -0.35 0.57 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.15 7.04 -51.93 -0.37 0.78 16 32 H 0.10 1.24 6.56 -51.93 -0.34 0.90 16 33 H 0.07 0.85 6.77 -51.93 -0.35 0.50 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.66 7.91 -51.93 -0.41 0.25 16 40 H 0.41 2.75 8.82 -40.82 -0.36 2.39 16 41 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.95 5.71 -52.48 -0.30 2.65 16 44 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.13 2.73 6.45 -52.49 -0.34 2.39 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -34.42 366.96 -7.23 -41.65 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.05 Total: 4.82 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.30 Total: -8.46 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.31 Total: -39.03 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.14 Total: -21.84 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.86 Total: 17.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.42 -7.23 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874071833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.338 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds