Wall clock time and date at job start Tue Mar 31 2020 17:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 N 1.46495 * 109.47419 * 120.00207 * 2 1 3 5 5 C 1.34415 * 124.35068 * 300.02705 * 4 2 1 6 6 O 1.21284 * 124.94177 * 359.53067 * 5 4 2 7 7 C 1.51274 * 110.12027 * 179.56792 * 5 4 2 8 8 C 1.54634 * 104.19594 * 343.74865 * 7 5 4 9 9 C 1.46761 * 124.34962 * 119.99689 * 4 2 1 10 10 H 1.09003 * 110.24643 * 78.04192 * 9 4 2 11 11 C 1.50699 * 110.24681 * 316.12891 * 9 4 2 12 12 O 1.21283 * 120.00259 * 359.97438 * 11 9 4 13 13 N 1.34780 * 119.99774 * 180.02562 * 11 9 4 14 14 C 1.39924 * 119.99902 * 174.79375 * 13 11 9 15 15 C 1.38965 * 120.03412 * 146.39811 * 14 13 11 16 16 C 1.38160 * 120.06721 * 179.97438 * 15 14 13 17 17 C 1.38170 * 120.13599 * 0.04811 * 16 15 14 18 18 C 1.38901 * 120.07095 * 359.95772 * 17 16 15 19 19 O 1.35759 * 120.03084 * 180.02562 * 18 17 16 20 20 C 1.34831 * 117.00166 * 5.91337 * 19 18 17 21 21 H 1.07998 * 119.99504 * 5.40966 * 20 19 18 22 22 C 1.38648 * 120.00100 * 185.40478 * 20 19 18 23 23 N 1.31561 * 120.00136 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99843 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47073 * 90.00615 * 24 22 20 26 26 H 1.48501 * 109.47389 * 209.99933 * 24 22 20 27 27 H 1.48496 * 109.47423 * 330.00362 * 24 22 20 28 28 C 1.38714 * 120.03726 * 326.13304 * 14 13 11 29 29 H 1.09000 * 109.46793 * 299.99945 * 1 2 3 30 30 H 1.09002 * 109.47245 * 59.99938 * 1 2 3 31 31 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46992 * 240.00781 * 2 1 3 33 33 H 1.09003 * 109.46823 * 60.00038 * 3 2 1 34 34 H 1.09000 * 109.47259 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47113 * 300.00143 * 3 2 1 36 36 H 1.08999 * 110.48958 * 102.42246 * 7 5 4 37 37 H 1.08996 * 110.49266 * 225.06939 * 7 5 4 38 38 H 1.08991 * 110.97319 * 142.91335 * 8 7 5 39 39 H 1.09001 * 110.96475 * 266.68027 * 8 7 5 40 40 H 0.97002 * 120.00347 * 354.79201 * 13 11 9 41 41 H 1.07998 * 119.96928 * 0.02562 * 15 14 13 42 42 H 1.07995 * 119.93025 * 180.02562 * 16 15 14 43 43 H 1.08007 * 119.96108 * 179.97438 * 17 16 15 44 44 H 0.97000 * 119.99983 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.06350 * 359.97360 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7477 -0.3087 2.4561 6 8 1.0761 0.6541 2.7610 7 6 2.4032 -1.2539 3.4385 8 6 2.7605 -2.4957 2.5893 9 6 2.8656 -1.8888 1.1726 10 1 3.8983 -1.6164 0.9546 11 6 2.3571 -2.8669 0.1451 12 8 1.3752 -2.5983 -0.5142 13 7 2.9929 -4.0408 -0.0403 14 6 2.4600 -4.9946 -0.9146 15 6 3.3075 -5.8152 -1.6491 16 6 2.7821 -6.7575 -2.5121 17 6 1.4132 -6.8864 -2.6485 18 6 0.5609 -6.0691 -1.9172 19 8 -0.7840 -6.1968 -2.0514 20 6 -1.2290 -7.2148 -2.8154 21 1 -0.5306 -7.9347 -3.2158 22 6 -2.5832 -7.3374 -3.0867 23 7 -3.0174 -8.3310 -3.8317 24 14 -3.7911 -6.0926 -2.3933 25 1 -3.9536 -4.9721 -3.3543 26 1 -5.1048 -6.7484 -2.1711 27 1 -3.2754 -5.5678 -1.1035 28 6 1.0853 -5.1257 -1.0449 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 3.3045 -0.8053 3.8562 37 1 1.7065 -1.5224 4.2326 38 1 3.7135 -2.9217 2.9028 39 1 1.9672 -3.2417 2.6362 40 1 3.8198 -4.2245 0.4322 41 1 4.3779 -5.7168 -1.5446 42 1 3.4427 -7.3944 -3.0815 43 1 1.0055 -7.6237 -3.3243 44 1 -3.9648 -8.4170 -4.0212 45 1 0.4246 -4.4923 -0.4716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874071833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:48 Heat of formation + Delta-G solvation = -83.399252 kcal Electronic energy + Delta-G solvation = -28868.359066 eV Core-core repulsion = 24851.026259 eV Total energy + Delta-G solvation = -4017.332808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28413 -41.14066 -40.21763 -38.38220 -37.25217 -36.22487 -35.38111 -34.45935 -31.44887 -31.05016 -30.65038 -28.79769 -28.17079 -27.23708 -24.47605 -23.54274 -23.42585 -22.83968 -21.59366 -20.06732 -19.80826 -19.35041 -18.54062 -17.95915 -17.09199 -16.96911 -16.83680 -16.52587 -16.15301 -16.01840 -15.70569 -15.52595 -15.28201 -14.98036 -14.78179 -14.53395 -14.37027 -14.27123 -14.19972 -13.89898 -13.69681 -13.32760 -13.09471 -13.00839 -12.91508 -12.78541 -12.75315 -12.50913 -12.25629 -12.15160 -12.07981 -11.99562 -11.51617 -11.30561 -10.96604 -10.88319 -10.59719 -9.79114 -9.38384 -8.91484 -8.54098 -6.25351 0.37035 0.65378 1.24312 1.27709 1.44237 1.46135 1.54600 1.78044 2.12484 2.22793 2.73564 3.03840 3.11572 3.25821 3.40781 3.67573 3.93306 4.01800 4.07859 4.10674 4.11726 4.28084 4.36527 4.39874 4.52383 4.62041 4.64486 4.67591 4.71993 4.77610 4.84895 4.88828 4.92547 4.99303 5.07004 5.14225 5.25829 5.35177 5.38023 5.42804 5.56525 5.68909 5.76912 5.90000 6.10932 6.22049 6.46543 6.81479 7.10042 7.17730 7.58608 8.57609 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003466 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.054228 B = 8076.154213 C = 9351.345602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 C -0.157 4.157 4 N -0.601 5.601 5 C 0.504 3.496 6 O -0.573 6.573 7 C -0.144 4.144 8 C -0.114 4.114 9 C 0.119 3.881 10 H 0.157 0.843 11 C 0.495 3.505 12 O -0.545 6.545 13 N -0.644 5.644 14 C 0.189 3.811 15 C -0.191 4.191 16 C -0.053 4.053 17 C -0.250 4.250 18 C 0.132 3.868 19 O -0.252 6.252 20 C -0.395 4.395 21 H 0.088 0.912 22 C 0.017 3.983 23 N -0.919 5.919 24 Si 0.960 3.040 25 H -0.270 1.270 26 H -0.261 1.261 27 H -0.273 1.273 28 C -0.201 4.201 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.073 0.927 40 H 0.436 0.564 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.110 0.890 44 H 0.285 0.715 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.086 12.890 13.633 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 C -0.215 4.215 4 N -0.334 5.334 5 C 0.294 3.706 6 O -0.452 6.452 7 C -0.183 4.183 8 C -0.152 4.152 9 C 0.012 3.988 10 H 0.174 0.826 11 C 0.282 3.718 12 O -0.421 6.421 13 N -0.292 5.292 14 C 0.094 3.906 15 C -0.211 4.211 16 C -0.072 4.072 17 C -0.269 4.269 18 C 0.083 3.917 19 O -0.159 6.159 20 C -0.472 4.472 21 H 0.106 0.894 22 C -0.182 4.182 23 N -0.559 5.559 24 Si 0.783 3.217 25 H -0.196 1.196 26 H -0.185 1.185 27 H -0.198 1.198 28 C -0.222 4.222 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.159 0.841 37 H 0.125 0.875 38 H 0.173 0.827 39 H 0.091 0.909 40 H 0.276 0.724 41 H 0.187 0.813 42 H 0.172 0.828 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.656 13.704 13.304 28.133 hybrid contribution -1.264 -0.124 -0.373 1.324 sum 19.392 13.580 12.931 26.975 Atomic orbital electron populations 1.22008 0.96402 1.01106 1.01739 1.20869 0.93546 0.92982 0.86987 1.22124 1.01849 0.94839 1.02666 1.48359 1.50810 1.27747 1.06469 1.21715 0.79201 0.85240 0.84429 1.90679 1.41335 1.31244 1.81961 1.22431 1.04026 0.94484 0.97405 1.22806 1.06896 0.96804 0.88655 1.21967 0.97158 0.83843 0.95846 0.82579 1.21615 0.83512 0.82672 0.83972 1.90832 1.27241 1.76425 1.47568 1.43182 1.28061 1.14038 1.43932 1.17199 0.90037 0.90776 0.92580 1.20946 1.00466 0.99712 0.99963 1.21035 0.92785 0.96918 0.96432 1.21349 0.95352 1.04603 1.05644 1.19403 0.83115 0.94643 0.94550 1.83547 1.19285 1.48682 1.64403 1.20737 0.94131 1.03297 1.28990 0.89444 1.25117 0.98093 0.98849 0.96174 1.69706 1.16948 1.31619 1.37676 0.85380 0.78156 0.78809 0.79322 1.19570 1.18526 1.19814 1.20040 0.95365 1.02375 1.04456 0.93314 0.91311 0.94246 0.89329 0.93037 0.90931 0.90664 0.84081 0.87460 0.82665 0.90862 0.72353 0.81271 0.82836 0.87207 0.90535 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.03 71.98 0.65 -3.95 16 2 C 0.16 3.84 2.38 44.99 0.11 3.94 16 3 C -0.16 -3.16 9.20 71.98 0.66 -2.50 16 4 N -0.60 -12.24 2.58 -774.53 -2.00 -14.24 16 5 C 0.50 11.00 7.41 87.90 0.65 11.65 16 6 O -0.57 -17.60 15.12 -3.04 -0.05 -17.65 16 7 C -0.14 -1.44 6.86 30.59 0.21 -1.23 16 8 C -0.11 -0.75 6.65 31.65 0.21 -0.54 16 9 C 0.12 1.45 3.70 44.70 0.17 1.61 16 10 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 11 C 0.50 10.59 6.56 87.66 0.57 11.16 16 12 O -0.55 -18.27 10.66 -3.04 -0.03 -18.30 16 13 N -0.64 -11.33 5.31 -303.55 -1.61 -12.94 16 14 C 0.19 5.41 6.27 38.14 0.24 5.65 16 15 C -0.19 -4.65 9.96 22.43 0.22 -4.42 16 16 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 17 C -0.25 -10.67 9.13 22.41 0.20 -10.46 16 18 C 0.13 6.41 6.64 22.56 0.15 6.56 16 19 O -0.25 -14.45 8.58 -22.84 -0.20 -14.64 16 20 C -0.40 -23.89 9.90 67.92 0.67 -23.22 16 21 H 0.09 5.42 5.53 -2.91 -0.02 5.40 16 22 C 0.02 0.98 5.49 84.83 0.47 1.45 16 23 N -0.92 -55.68 13.96 21.61 0.30 -55.38 16 24 Si 0.96 48.20 28.62 68.60 1.96 50.16 16 25 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -14.14 7.11 99.48 0.71 -13.43 16 28 C -0.20 -8.26 8.60 22.51 0.19 -8.07 16 29 H 0.05 1.55 6.80 -2.39 -0.02 1.53 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.39 7.04 -2.39 -0.02 1.37 16 32 H 0.09 2.26 6.56 -2.39 -0.02 2.25 16 33 H 0.05 1.25 6.77 -2.39 -0.02 1.23 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.16 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.07 0.81 7.91 -2.39 -0.02 0.79 16 40 H 0.44 2.75 8.82 -92.71 -0.82 1.93 16 41 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 43 H 0.11 5.17 5.71 -2.91 -0.02 5.15 16 44 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.11 4.77 6.45 -2.91 -0.02 4.76 16 Total: -1.00 -87.05 366.96 4.20 -82.86 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.21 Total: 13.88 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 5.60 Total: -13.74 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -3.31 Total: -82.56 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.27 Total: -50.59 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.96 Total: 50.16 kcal Total: -87.05 4.20 -82.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874071833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.544 kcal (2) G-P(sol) polarization free energy of solvation -87.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds