Wall clock time and date at job start Tue Mar 31 2020 16:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.53004 * 109.47096 * 120.00541 * 2 1 3 5 5 N 1.46504 * 109.46776 * 175.00022 * 4 2 1 6 6 C 1.46504 * 120.00164 * 95.71928 * 5 4 2 7 7 C 1.50700 * 109.47026 * 89.99714 * 6 5 4 8 8 H 1.07998 * 120.00034 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99790 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99892 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00080 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47191 * 90.00189 * 11 9 7 13 13 H 1.48502 * 109.47028 * 210.00280 * 11 9 7 14 14 H 1.48503 * 109.47282 * 329.99826 * 11 9 7 15 15 C 1.34773 * 119.99852 * 275.71470 * 5 4 2 16 16 O 1.21596 * 120.00199 * 184.68153 * 15 5 4 17 17 C 1.47524 * 120.00031 * 4.68072 * 15 5 4 18 18 C 1.39862 * 120.26447 * 301.60328 * 17 15 5 19 19 C 1.37768 * 120.04120 * 180.02562 * 18 17 15 20 20 C 1.38607 * 120.46634 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.22334 * 0.02562 * 20 19 18 22 22 C 1.39411 * 119.95936 * 359.75314 * 21 20 19 23 23 N 1.39504 * 119.40782 * 179.62353 * 22 21 20 24 24 C 1.35081 * 118.99316 * 16.04311 * 23 22 21 25 25 O 1.21288 * 120.13397 * 181.36504 * 24 23 22 26 26 C 1.50762 * 119.72864 * 1.37772 * 24 23 22 27 27 O 1.36028 * 120.62161 * 180.02562 * 21 20 19 28 28 H 1.08997 * 109.46649 * 299.99500 * 1 2 3 29 29 H 1.08997 * 109.47262 * 59.99487 * 1 2 3 30 30 H 1.08995 * 109.46900 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47198 * 239.99972 * 2 1 3 32 32 H 1.09001 * 109.46609 * 60.00181 * 3 2 1 33 33 H 1.08997 * 109.47242 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47370 * 300.00447 * 3 2 1 35 35 H 1.08993 * 109.47275 * 54.99751 * 4 2 1 36 36 H 1.09003 * 109.46516 * 294.99448 * 4 2 1 37 37 H 1.09000 * 109.47000 * 209.99658 * 6 5 4 38 38 H 1.08996 * 109.47056 * 329.99945 * 6 5 4 39 39 H 0.96999 * 120.00395 * 179.97438 * 10 9 7 40 40 H 1.08002 * 119.98354 * 359.97438 * 18 17 15 41 41 H 1.07996 * 119.76845 * 180.02562 * 19 18 17 42 42 H 1.08001 * 119.89222 * 180.02562 * 20 19 18 43 43 H 0.96996 * 120.53485 * 195.75305 * 23 22 21 44 44 H 1.08996 * 109.45686 * 208.71169 * 26 24 23 45 45 H 1.09005 * 109.42802 * 88.77104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.3341 0.1684 1.8695 7 6 4.6101 -0.2858 3.2797 8 1 4.2045 -1.2217 3.6347 9 6 5.3795 0.4939 4.1169 10 7 5.6200 0.0978 5.3477 11 14 6.0804 2.1129 3.5030 12 1 5.1149 3.2069 3.7793 13 1 7.3605 2.3945 4.2011 14 1 6.3232 2.0245 2.0407 15 6 4.0761 -1.8384 0.5118 16 8 5.2842 -1.9750 0.5333 17 6 3.2409 -2.7804 -0.2573 18 6 2.2395 -3.5184 0.3820 19 6 1.4626 -4.3972 -0.3405 20 6 1.6644 -4.5576 -1.7024 21 6 2.6502 -3.8356 -2.3498 22 6 3.4412 -2.9392 -1.6327 23 7 4.4376 -2.2226 -2.2958 24 6 4.4093 -2.1568 -3.6447 25 8 5.2791 -1.5603 -4.2437 26 6 3.2920 -2.8277 -4.4026 27 8 2.8549 -3.9863 -3.6861 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6054 -1.7199 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 5.2762 0.2800 1.3328 38 1 3.8128 1.1253 1.8915 39 1 6.1616 0.6461 5.9367 40 1 2.0757 -3.4000 1.4430 41 1 0.6903 -4.9645 0.1575 42 1 1.0497 -5.2488 -2.2599 43 1 5.1380 -1.7746 -1.7961 44 1 3.6492 -3.1245 -5.3887 45 1 2.4596 -2.1325 -4.5121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874232970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:56 Heat of formation + Delta-G solvation = -74.259567 kcal Electronic energy + Delta-G solvation = -30000.796094 eV Core-core repulsion = 25983.859613 eV Total energy + Delta-G solvation = -4016.936481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.73422 -39.77996 -38.78774 -37.31264 -36.61662 -35.27426 -33.74466 -32.44691 -31.16614 -30.12512 -28.35839 -27.90977 -27.04556 -25.85191 -24.13405 -23.83792 -22.09719 -20.50688 -20.04140 -19.64025 -18.49431 -17.83776 -17.29080 -16.99037 -16.57347 -16.01528 -15.83595 -15.43840 -15.13179 -14.92767 -14.63898 -14.53082 -14.42658 -13.98380 -13.51179 -13.35201 -13.24918 -12.99022 -12.72537 -12.36659 -12.32140 -12.17989 -11.95656 -11.80841 -11.60230 -11.47091 -11.21220 -11.09349 -10.99974 -10.77414 -10.62110 -10.41955 -10.31176 -10.14609 -9.61550 -9.32619 -8.80409 -8.64127 -8.13822 -7.85659 -6.14167 -4.13353 0.77360 0.91602 2.11329 2.57976 2.97261 3.03620 3.22001 3.30599 3.34205 3.49243 3.59619 3.78844 4.34273 4.41628 4.61757 4.73164 4.78393 4.83703 4.95279 5.01520 5.07195 5.18073 5.18738 5.23067 5.43772 5.58276 5.69205 5.70911 5.75882 5.90005 5.94276 5.99494 6.00202 6.14588 6.19615 6.30934 6.34443 6.37293 6.43249 6.58860 6.66976 6.84091 7.04085 7.17283 7.53343 7.60260 8.03297 8.37675 8.68909 8.89135 9.45432 10.99080 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.004313 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.838014 B = 6490.028860 C = 6886.537774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.149 4.149 4 C 0.105 3.895 5 N -0.575 5.575 6 C 0.215 3.785 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.871 3.129 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.549 3.451 16 O -0.530 6.530 17 C -0.114 4.114 18 C -0.081 4.081 19 C -0.113 4.113 20 C -0.096 4.096 21 C 0.069 3.931 22 C 0.133 3.867 23 N -0.653 5.653 24 C 0.488 3.512 25 O -0.510 6.510 26 C 0.051 3.949 27 O -0.301 6.301 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.032 0.968 39 H 0.265 0.735 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.426 0.574 44 H 0.146 0.854 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 -5.790 -15.962 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.206 4.206 4 C -0.019 4.019 5 N -0.304 5.304 6 C 0.095 3.905 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.698 3.302 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.189 1.189 15 C 0.334 3.666 16 O -0.408 6.408 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.132 4.132 20 C -0.115 4.115 21 C 0.023 3.977 22 C 0.035 3.965 23 N -0.301 5.301 24 C 0.275 3.725 25 O -0.385 6.385 26 C -0.027 4.027 27 O -0.215 6.215 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.269 0.731 44 H 0.163 0.837 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.765 -5.644 -16.350 22.106 hybrid contribution 0.832 1.280 0.282 1.552 sum -12.934 -4.364 -16.068 21.084 Atomic orbital electron populations 1.21751 0.94738 1.01676 1.01814 1.21556 0.95755 0.97124 0.98791 1.21894 1.01903 0.95499 1.01320 1.21867 0.80530 1.01289 0.98216 1.47860 1.06529 1.26479 1.49533 1.19801 0.90647 0.86575 0.93488 1.21276 1.32921 1.08232 0.94326 0.90623 1.24827 0.95441 0.97855 0.94669 1.69883 1.38835 1.38380 1.06207 0.86924 0.79290 0.84231 0.79785 1.20002 1.20845 1.18917 1.17963 0.87404 0.81268 0.79939 1.90821 1.14020 1.72343 1.63567 1.19675 0.99325 1.01344 0.91632 1.21215 0.93068 0.94965 1.00703 1.20900 1.00457 0.98958 0.92903 1.20577 0.95456 1.00673 0.94815 1.18435 0.97415 0.98902 0.82987 1.17816 0.91664 0.95496 0.91503 1.43787 1.28174 1.50994 1.07119 1.21563 0.88004 0.80522 0.82410 1.90814 1.38142 1.42070 1.67433 1.23207 0.95382 0.87966 0.96161 1.86267 1.84157 1.33849 1.17237 0.92348 0.92862 0.92592 0.91812 0.92304 0.92144 0.93337 0.90450 0.89260 0.94336 0.94992 0.92492 0.84017 0.84283 0.84157 0.73135 0.83686 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 2 C -0.11 -1.40 3.02 -90.62 -0.27 -1.67 16 3 C -0.15 -1.99 8.34 37.16 0.31 -1.68 16 4 C 0.10 1.54 4.58 -4.04 -0.02 1.52 16 5 N -0.57 -11.06 2.19 -176.29 -0.39 -11.45 16 6 C 0.21 5.00 3.28 -5.19 -0.02 4.98 16 7 C -0.53 -14.66 9.94 -34.44 -0.34 -15.01 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 11 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 15 C 0.55 10.74 6.47 -12.48 -0.08 10.66 16 16 O -0.53 -12.63 15.62 5.28 0.08 -12.55 16 17 C -0.11 -1.72 4.26 -104.88 -0.45 -2.16 16 18 C -0.08 -0.96 7.80 -39.15 -0.31 -1.27 16 19 C -0.11 -1.01 10.02 -39.62 -0.40 -1.41 16 20 C -0.10 -0.88 9.99 -39.43 -0.39 -1.28 16 21 C 0.07 0.80 6.44 -39.13 -0.25 0.55 16 22 C 0.13 1.87 6.54 -83.31 -0.54 1.33 16 23 N -0.65 -9.89 5.33 -9.50 -0.05 -9.95 16 24 C 0.49 6.72 7.94 -10.82 -0.09 6.63 16 25 O -0.51 -8.55 17.95 5.55 0.10 -8.45 16 26 C 0.05 0.47 7.17 36.04 0.26 0.73 16 27 O -0.30 -3.22 10.46 -19.83 -0.21 -3.43 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.83 7.41 -51.93 -0.38 0.45 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.95 6.33 -51.93 -0.33 0.62 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.98 4.41 -51.93 -0.23 0.75 16 36 H 0.09 1.37 8.03 -51.93 -0.42 0.96 16 37 H 0.04 0.98 6.55 -51.93 -0.34 0.64 16 38 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.14 1.64 6.95 -52.49 -0.36 1.27 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.43 7.38 7.10 -40.82 -0.29 7.09 16 44 H 0.15 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -34.67 366.46 -7.24 -41.91 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.06 Total: 5.26 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.34 Total: 2.95 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.34 Total: -47.70 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.03 Total: -24.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.67 -7.24 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.346 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds