Wall clock time and date at job start Tue Mar 31 2020 16:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.53004 * 109.47096 * 120.00541 * 2 1 3 5 5 N 1.46504 * 109.46776 * 175.00022 * 4 2 1 6 6 C 1.46504 * 120.00164 * 95.71928 * 5 4 2 7 7 C 1.50700 * 109.47026 * 89.99714 * 6 5 4 8 8 H 1.07998 * 120.00034 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99790 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99892 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00080 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47191 * 90.00189 * 11 9 7 13 13 H 1.48502 * 109.47028 * 210.00280 * 11 9 7 14 14 H 1.48503 * 109.47282 * 329.99826 * 11 9 7 15 15 C 1.34773 * 119.99852 * 275.71470 * 5 4 2 16 16 O 1.21596 * 120.00199 * 184.68153 * 15 5 4 17 17 C 1.47524 * 120.00031 * 4.68072 * 15 5 4 18 18 C 1.39862 * 120.26447 * 301.60328 * 17 15 5 19 19 C 1.37768 * 120.04120 * 180.02562 * 18 17 15 20 20 C 1.38607 * 120.46634 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.22334 * 0.02562 * 20 19 18 22 22 C 1.39411 * 119.95936 * 359.75314 * 21 20 19 23 23 N 1.39504 * 119.40782 * 179.62353 * 22 21 20 24 24 C 1.35081 * 118.99316 * 16.04311 * 23 22 21 25 25 O 1.21288 * 120.13397 * 181.36504 * 24 23 22 26 26 C 1.50762 * 119.72864 * 1.37772 * 24 23 22 27 27 O 1.36028 * 120.62161 * 180.02562 * 21 20 19 28 28 H 1.08997 * 109.46649 * 299.99500 * 1 2 3 29 29 H 1.08997 * 109.47262 * 59.99487 * 1 2 3 30 30 H 1.08995 * 109.46900 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47198 * 239.99972 * 2 1 3 32 32 H 1.09001 * 109.46609 * 60.00181 * 3 2 1 33 33 H 1.08997 * 109.47242 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47370 * 300.00447 * 3 2 1 35 35 H 1.08993 * 109.47275 * 54.99751 * 4 2 1 36 36 H 1.09003 * 109.46516 * 294.99448 * 4 2 1 37 37 H 1.09000 * 109.47000 * 209.99658 * 6 5 4 38 38 H 1.08996 * 109.47056 * 329.99945 * 6 5 4 39 39 H 0.96999 * 120.00395 * 179.97438 * 10 9 7 40 40 H 1.08002 * 119.98354 * 359.97438 * 18 17 15 41 41 H 1.07996 * 119.76845 * 180.02562 * 19 18 17 42 42 H 1.08001 * 119.89222 * 180.02562 * 20 19 18 43 43 H 0.96996 * 120.53485 * 195.75305 * 23 22 21 44 44 H 1.08996 * 109.45686 * 208.71169 * 26 24 23 45 45 H 1.09005 * 109.42802 * 88.77104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.3341 0.1684 1.8695 7 6 4.6101 -0.2858 3.2797 8 1 4.2045 -1.2217 3.6347 9 6 5.3795 0.4939 4.1169 10 7 5.6200 0.0978 5.3477 11 14 6.0804 2.1129 3.5030 12 1 5.1149 3.2069 3.7793 13 1 7.3605 2.3945 4.2011 14 1 6.3232 2.0245 2.0407 15 6 4.0761 -1.8384 0.5118 16 8 5.2842 -1.9750 0.5333 17 6 3.2409 -2.7804 -0.2573 18 6 2.2395 -3.5184 0.3820 19 6 1.4626 -4.3972 -0.3405 20 6 1.6644 -4.5576 -1.7024 21 6 2.6502 -3.8356 -2.3498 22 6 3.4412 -2.9392 -1.6327 23 7 4.4376 -2.2226 -2.2958 24 6 4.4093 -2.1568 -3.6447 25 8 5.2791 -1.5603 -4.2437 26 6 3.2920 -2.8277 -4.4026 27 8 2.8549 -3.9863 -3.6861 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6054 -1.7199 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 5.2762 0.2800 1.3328 38 1 3.8128 1.1253 1.8915 39 1 6.1616 0.6461 5.9367 40 1 2.0757 -3.4000 1.4430 41 1 0.6903 -4.9645 0.1575 42 1 1.0497 -5.2488 -2.2599 43 1 5.1380 -1.7746 -1.7961 44 1 3.6492 -3.1245 -5.3887 45 1 2.4596 -2.1325 -4.5121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874232970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:53 Heat of formation + Delta-G solvation = -99.157416 kcal Electronic energy + Delta-G solvation = -30001.875746 eV Core-core repulsion = 25983.859613 eV Total energy + Delta-G solvation = -4018.016133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.71942 -41.11096 -39.86475 -38.28053 -37.95828 -36.31857 -35.40901 -34.27350 -32.31275 -31.05536 -30.06020 -28.80036 -28.01420 -27.10843 -25.57003 -24.79248 -23.63295 -21.62690 -20.99534 -20.78825 -19.62870 -19.15933 -18.88738 -18.28694 -17.72193 -17.49783 -16.86811 -16.48814 -16.45586 -16.01933 -15.87968 -15.70085 -15.52199 -15.28474 -14.94192 -14.58979 -14.38223 -14.22996 -13.94679 -13.83896 -13.67301 -13.31583 -13.08138 -12.99467 -12.84756 -12.62850 -12.50268 -12.34688 -12.30071 -11.99258 -11.95182 -11.83093 -11.67202 -11.58294 -11.40482 -10.85758 -10.83519 -9.79604 -9.43942 -9.08470 -8.37593 -6.41855 -0.19380 0.02389 1.13978 1.25879 1.30756 1.40171 1.56548 1.59223 2.09881 2.24386 2.26116 2.59435 2.86892 2.96148 3.33500 3.75260 3.84266 3.92157 3.99071 4.00405 4.13178 4.18180 4.26887 4.45455 4.54768 4.58230 4.64924 4.66050 4.80644 4.83310 4.86290 4.90709 5.01686 5.05411 5.07962 5.23711 5.26086 5.36230 5.37237 5.40184 5.47430 5.55406 5.60135 5.68749 6.15591 6.18370 6.49730 6.52798 6.59406 7.10940 7.25205 8.79173 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.004313 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.838014 B = 6490.028860 C = 6886.537774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 C -0.151 4.151 4 C 0.099 3.901 5 N -0.579 5.579 6 C 0.228 3.772 7 C -0.533 4.533 8 H 0.034 0.966 9 C 0.017 3.983 10 N -0.941 5.941 11 Si 0.937 3.063 12 H -0.248 1.248 13 H -0.281 1.281 14 H -0.262 1.262 15 C 0.544 3.456 16 O -0.590 6.590 17 C -0.135 4.135 18 C -0.089 4.089 19 C -0.088 4.088 20 C -0.076 4.076 21 C 0.068 3.932 22 C 0.115 3.885 23 N -0.667 5.667 24 C 0.482 3.518 25 O -0.553 6.553 26 C 0.060 3.940 27 O -0.298 6.298 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.012 0.988 38 H 0.051 0.949 39 H 0.269 0.731 40 H 0.140 0.860 41 H 0.183 0.817 42 H 0.181 0.819 43 H 0.408 0.592 44 H 0.174 0.826 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.776 -6.640 -18.302 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 C -0.208 4.208 4 C -0.023 4.023 5 N -0.307 5.307 6 C 0.106 3.894 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.181 4.181 10 N -0.581 5.581 11 Si 0.760 3.240 12 H -0.172 1.172 13 H -0.207 1.207 14 H -0.186 1.186 15 C 0.332 3.668 16 O -0.471 6.471 17 C -0.141 4.141 18 C -0.108 4.108 19 C -0.107 4.107 20 C -0.094 4.094 21 C 0.022 3.978 22 C 0.017 3.983 23 N -0.312 5.312 24 C 0.271 3.729 25 O -0.430 6.430 26 C -0.017 4.017 27 O -0.212 6.212 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.158 0.842 41 H 0.201 0.799 42 H 0.198 0.802 43 H 0.246 0.754 44 H 0.191 0.809 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.726 -6.517 -18.701 26.579 hybrid contribution 1.987 1.409 1.035 2.646 sum -15.739 -5.108 -17.666 24.206 Atomic orbital electron populations 1.21708 0.91720 1.03149 1.02649 1.21476 0.98013 0.95810 0.97003 1.21910 0.99869 0.96655 1.02369 1.22176 0.77761 1.03066 0.99253 1.47896 1.08209 1.25674 1.48927 1.19395 0.90763 0.88417 0.90850 1.21499 1.32517 1.06621 0.96505 0.94775 1.25726 0.95772 1.01912 0.94703 1.70027 1.40107 1.40262 1.07682 0.85867 0.78940 0.80016 0.79133 1.17225 1.20666 1.18638 1.18739 0.87231 0.81386 0.79430 1.90766 1.16859 1.73939 1.65574 1.19336 1.00705 1.02144 0.91935 1.21328 0.92906 0.95605 1.00918 1.21337 0.99661 0.96976 0.92700 1.21094 0.94074 0.99391 0.94890 1.18694 0.97404 0.98358 0.83379 1.18028 0.92230 0.96672 0.91324 1.44009 1.28170 1.51169 1.07857 1.22530 0.88612 0.79874 0.81880 1.90782 1.40056 1.44172 1.68001 1.23461 0.94408 0.87975 0.95895 1.86275 1.83910 1.34367 1.16637 0.92076 0.91469 0.90828 0.92231 0.92160 0.95309 0.91378 0.88060 0.90242 0.96968 0.93080 0.92232 0.84190 0.79934 0.80173 0.75366 0.80890 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.19 71.98 0.66 -1.46 16 2 C -0.10 -2.43 3.02 -10.79 -0.03 -2.47 16 3 C -0.15 -3.92 8.34 71.98 0.60 -3.32 16 4 C 0.10 2.91 4.58 86.38 0.40 3.31 16 5 N -0.58 -23.41 2.19 -829.91 -1.82 -25.22 16 6 C 0.23 11.14 3.28 85.63 0.28 11.43 16 7 C -0.53 -31.21 9.94 25.60 0.25 -30.95 16 8 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 9 C 0.02 1.03 5.47 84.65 0.46 1.49 16 10 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 11 Si 0.94 44.85 27.47 68.60 1.88 46.74 16 12 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.26 -12.33 6.54 99.48 0.65 -11.68 16 15 C 0.54 22.61 6.47 86.69 0.56 23.17 16 16 O -0.59 -30.56 15.62 -4.02 -0.06 -30.63 16 17 C -0.14 -4.10 4.26 -20.03 -0.09 -4.19 16 18 C -0.09 -1.94 7.80 22.55 0.18 -1.77 16 19 C -0.09 -1.14 10.02 22.25 0.22 -0.92 16 20 C -0.08 -0.98 9.99 22.37 0.22 -0.76 16 21 C 0.07 1.36 6.44 22.56 0.15 1.51 16 22 C 0.11 3.16 6.54 38.60 0.25 3.41 16 23 N -0.67 -21.02 5.33 -302.19 -1.61 -22.63 16 24 C 0.48 13.27 7.94 87.63 0.70 13.97 16 25 O -0.55 -19.13 17.95 -3.05 -0.05 -19.19 16 26 C 0.06 0.94 7.17 71.26 0.51 1.45 16 27 O -0.30 -5.28 10.46 -93.87 -0.98 -6.26 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.48 7.41 -2.39 -0.02 1.46 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.03 0.91 6.33 -2.39 -0.02 0.90 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 2.45 4.41 -2.39 -0.01 2.44 16 36 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 37 H 0.01 0.66 6.55 -2.39 -0.02 0.65 16 38 H 0.05 2.29 6.06 -2.39 -0.01 2.28 16 39 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.14 3.07 6.95 -2.91 -0.02 3.04 16 41 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 42 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.41 15.47 7.10 -92.71 -0.66 14.81 16 44 H 0.17 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -84.14 366.46 3.30 -80.84 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.32 Total: 21.41 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.32 Total: 13.90 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.13 Total: -106.80 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.10 Total: -56.08 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -84.14 3.30 -80.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.321 kcal (2) G-P(sol) polarization free energy of solvation -84.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds