Wall clock time and date at job start Tue Mar 31 2020 16:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 N 1.46503 * 109.47040 * 295.00123 * 3 2 1 5 5 C 1.34775 * 119.99868 * 84.99725 * 4 3 2 6 6 O 1.21536 * 120.00171 * 0.02562 * 5 4 3 7 7 C 1.47653 * 119.99846 * 179.97438 * 5 4 3 8 8 C 1.34205 * 119.99918 * 188.42046 * 7 5 4 9 9 C 1.47646 * 120.00224 * 30.64663 * 8 7 5 10 10 O 1.21536 * 119.99568 * 6.00982 * 9 8 7 11 11 N 1.34777 * 119.99918 * 186.00286 * 9 8 7 12 12 C 1.46499 * 119.99577 * 179.72676 * 11 9 8 13 13 C 1.50701 * 109.46888 * 180.27563 * 12 11 9 14 14 C 1.38265 * 119.94624 * 269.72811 * 13 12 11 15 15 C 1.38142 * 120.05501 * 179.72843 * 14 13 12 16 16 C 1.38734 * 119.94487 * 0.56548 * 15 14 13 17 17 O 1.35899 * 120.05642 * 179.68590 * 16 15 14 18 18 C 1.42892 * 117.00099 * 0.02562 * 17 16 15 19 19 C 1.38737 * 119.88766 * 359.70734 * 16 15 14 20 20 C 1.38144 * 119.94255 * 0.02562 * 19 16 15 21 21 C 1.50706 * 109.47049 * 175.00056 * 3 2 1 22 22 N 1.27941 * 119.99551 * 124.99801 * 21 3 2 23 23 Si 1.86789 * 119.99809 * 305.00014 * 21 3 2 24 24 H 1.48497 * 109.47715 * 60.00125 * 23 21 3 25 25 H 1.48508 * 109.47145 * 179.97438 * 23 21 3 26 26 H 1.48500 * 109.47237 * 299.99839 * 23 21 3 27 27 H 1.08996 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46497 * 299.99920 * 1 2 3 29 29 H 1.09000 * 109.46929 * 59.99671 * 1 2 3 30 30 H 1.09004 * 109.46712 * 239.99625 * 2 1 3 31 31 H 1.09000 * 109.46929 * 120.00329 * 2 1 3 32 32 H 1.08998 * 109.47133 * 55.00297 * 3 2 1 33 33 H 0.97000 * 119.99958 * 264.99996 * 4 3 2 34 34 H 1.07999 * 119.99721 * 8.41955 * 7 5 4 35 35 H 1.08000 * 119.99816 * 210.65684 * 8 7 5 36 36 H 0.96998 * 119.99928 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47430 * 300.27850 * 12 11 9 38 38 H 1.09007 * 109.47110 * 60.28134 * 12 11 9 39 39 H 1.07994 * 119.97161 * 359.97438 * 14 13 12 40 40 H 1.08000 * 120.02686 * 180.25194 * 15 14 13 41 41 H 1.09005 * 109.47498 * 180.02562 * 18 17 16 42 42 H 1.09004 * 109.46937 * 299.99522 * 18 17 16 43 43 H 1.08990 * 109.47322 * 60.00100 * 18 17 16 44 44 H 1.07994 * 120.02785 * 179.97438 * 19 16 15 45 45 H 1.07997 * 119.97386 * 180.02562 * 20 19 16 46 46 H 0.96998 * 119.99681 * 179.97438 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.6525 2.0975 -1.2518 5 6 0.4352 2.6643 -1.3669 6 8 -0.3408 2.6326 -0.4321 7 6 0.0448 3.3250 -2.6284 8 6 -1.0931 4.0338 -2.6904 9 6 -1.5976 4.7268 -1.4883 10 8 -0.9295 4.7472 -0.4733 11 7 -2.7991 5.3370 -1.5166 12 6 -3.3023 6.0195 -0.3220 13 6 -4.6585 6.6083 -0.6137 14 6 -4.7604 7.8970 -1.1042 15 6 -6.0022 8.4369 -1.3776 16 6 -7.1482 7.6893 -1.1486 17 8 -8.3712 8.2205 -1.4108 18 6 -8.4030 9.5547 -1.9215 19 6 -7.0434 6.3984 -0.6511 20 6 -5.7990 5.8610 -0.3845 21 6 3.5421 1.4442 0.1238 22 7 4.2549 2.0538 -0.7463 23 14 4.3628 0.5563 1.5476 24 1 4.0083 -0.8850 1.5027 25 1 5.8364 0.7066 1.4413 26 1 3.8964 1.1410 2.8305 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6055 1.9815 0.8418 33 1 2.2720 2.1231 -1.9978 34 1 0.6750 3.2377 -3.5011 35 1 -1.6398 4.0972 -3.6196 36 1 -3.3324 5.3205 -2.3267 37 1 -3.3848 5.3050 0.4971 38 1 -2.6131 6.8160 -0.0412 39 1 -3.8684 8.4805 -1.2774 40 1 -6.0811 9.4421 -1.7646 41 1 -9.4375 9.8561 -2.0863 42 1 -7.9384 10.2299 -1.2029 43 1 -7.8576 9.5960 -2.8642 44 1 -7.9340 5.8145 -0.4716 45 1 -5.7169 4.8561 0.0025 46 1 5.2216 2.0553 -0.6664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900471880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:31 Heat of formation + Delta-G solvation = -24.761035 kcal Electronic energy + Delta-G solvation = -27694.808315 eV Core-core repulsion = 23666.362512 eV Total energy + Delta-G solvation = -4028.445803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26948 -41.01114 -40.04718 -38.66397 -37.72964 -35.47966 -34.88637 -34.01037 -32.96056 -32.14694 -31.62689 -28.74130 -28.41130 -26.86153 -24.72543 -23.65381 -22.94355 -22.30239 -21.92091 -20.95142 -20.26199 -19.17741 -18.93565 -17.94961 -17.32346 -17.12407 -16.95112 -16.71017 -16.63854 -16.04852 -15.88538 -15.82356 -15.33051 -15.10197 -14.75113 -14.69544 -14.63590 -14.47415 -14.30765 -14.21311 -13.96356 -13.74137 -13.55981 -13.25604 -12.92482 -12.77516 -12.52133 -12.48166 -12.36665 -12.32482 -12.07399 -11.80437 -11.62491 -11.49236 -10.94445 -10.72861 -10.10802 -10.01751 -9.97755 -9.86516 -9.59670 -9.16080 -0.24717 0.29603 0.35233 0.70648 0.93570 1.31173 1.63934 1.77061 2.23131 2.27994 2.35383 2.50064 2.68615 2.88383 3.30513 3.72481 3.77640 3.87746 3.88596 3.97526 4.08902 4.13389 4.17460 4.23138 4.29425 4.33219 4.35040 4.41921 4.50611 4.60477 4.73825 4.75436 4.83031 4.89997 4.92684 4.98933 5.03592 5.08199 5.17568 5.23539 5.31233 5.33470 5.56090 5.60830 5.61845 5.70629 5.74288 6.37803 6.68222 6.74555 6.82144 7.45772 7.61577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.176 3.824 4 N -0.710 5.710 5 C 0.533 3.467 6 O -0.496 6.496 7 C -0.125 4.125 8 C -0.132 4.132 9 C 0.533 3.467 10 O -0.498 6.498 11 N -0.726 5.726 12 C 0.169 3.831 13 C -0.148 4.148 14 C -0.059 4.059 15 C -0.211 4.211 16 C 0.135 3.865 17 O -0.317 6.317 18 C 0.026 3.974 19 C -0.154 4.154 20 C -0.059 4.059 21 C -0.016 4.016 22 N -0.629 5.629 23 Si 0.941 3.059 24 H -0.231 1.231 25 H -0.247 1.247 26 H -0.231 1.231 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.407 0.593 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.400 0.600 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 0.093 -4.018 4.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.070 3.930 4 N -0.364 5.364 5 C 0.319 3.681 6 O -0.370 6.370 7 C -0.148 4.148 8 C -0.154 4.154 9 C 0.319 3.681 10 O -0.371 6.371 11 N -0.379 5.379 12 C 0.046 3.954 13 C -0.149 4.149 14 C -0.078 4.078 15 C -0.230 4.230 16 C 0.090 3.910 17 O -0.230 6.230 18 C -0.069 4.069 19 C -0.172 4.172 20 C -0.078 4.078 21 C -0.265 4.265 22 N -0.243 5.243 23 Si 0.756 3.244 24 H -0.153 1.153 25 H -0.170 1.170 26 H -0.154 1.154 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.244 0.756 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.234 0.766 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.167 0.155 -2.711 2.720 hybrid contribution 0.646 0.262 -0.796 1.058 sum 0.813 0.417 -3.506 3.623 Atomic orbital electron populations 1.21787 0.93890 1.00970 1.03426 1.21975 0.97904 0.94726 1.02760 1.20267 0.89184 0.94309 0.89212 1.45740 1.16099 1.58051 1.16495 1.18572 0.82141 0.79609 0.87780 1.90866 1.50726 1.57020 1.38386 1.23441 0.95941 0.96615 0.98776 1.23370 0.95840 0.97076 0.99133 1.18649 0.81357 0.79957 0.88131 1.90880 1.56307 1.58232 1.31728 1.45986 1.19533 1.56809 1.15611 1.20067 0.90836 0.96589 0.87881 1.19774 0.94748 0.95234 1.05139 1.20893 0.97066 0.94414 0.95409 1.21271 0.92360 1.01288 1.08033 1.19148 0.84134 0.93092 0.94656 1.86095 1.26453 1.30987 1.79463 1.23109 1.04274 0.81049 0.98475 1.20483 0.98656 0.93662 1.04413 1.20946 0.90854 0.99486 0.96470 1.30692 0.99151 0.95550 1.01105 1.67980 1.13135 1.15076 1.28114 0.85630 0.79552 0.81338 0.77924 1.15339 1.17032 1.15372 0.93180 0.91761 0.92335 0.91177 0.90783 0.86967 0.75638 0.83748 0.83812 0.76624 0.90481 0.90783 0.85500 0.85202 0.87951 0.92452 0.92462 0.84869 0.84962 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.26 8.51 37.16 0.32 0.06 16 2 C -0.13 -0.01 5.30 -26.73 -0.14 -0.15 16 3 C 0.18 0.19 2.37 -69.08 -0.16 0.02 16 4 N -0.71 -0.96 4.85 -55.94 -0.27 -1.23 16 5 C 0.53 1.70 5.71 -12.42 -0.07 1.63 16 6 O -0.50 -3.24 10.53 -19.44 -0.20 -3.45 16 7 C -0.13 -0.03 9.94 -37.16 -0.37 -0.40 16 8 C -0.13 -0.01 9.93 -37.16 -0.37 -0.38 16 9 C 0.53 1.72 7.20 -12.42 -0.09 1.63 16 10 O -0.50 -3.79 13.32 -19.45 -0.26 -4.05 16 11 N -0.73 -0.49 5.55 -62.50 -0.35 -0.84 16 12 C 0.17 0.20 5.80 -5.19 -0.03 0.17 16 13 C -0.15 -0.07 5.25 -104.60 -0.55 -0.62 16 14 C -0.06 -0.01 9.69 -39.61 -0.38 -0.39 16 15 C -0.21 -0.10 9.04 -39.43 -0.36 -0.46 16 16 C 0.14 0.23 6.69 -39.21 -0.26 -0.03 16 17 O -0.32 -0.60 10.50 -19.42 -0.20 -0.80 16 18 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 19 C -0.15 -0.19 9.99 -39.43 -0.39 -0.59 16 20 C -0.06 -0.03 9.69 -39.60 -0.38 -0.41 16 21 C -0.02 0.00 5.37 -13.90 -0.07 -0.07 16 22 N -0.63 -0.12 12.48 56.23 0.70 0.58 16 23 Si 0.94 -1.25 27.80 -169.99 -4.72 -5.97 16 24 H -0.23 0.31 6.94 56.52 0.39 0.70 16 25 H -0.25 0.20 7.11 56.52 0.40 0.60 16 26 H -0.23 0.09 7.11 56.52 0.40 0.50 16 27 H 0.05 0.05 8.14 -51.93 -0.42 -0.38 16 28 H 0.06 0.21 7.85 -51.92 -0.41 -0.20 16 29 H 0.06 0.18 5.64 -51.93 -0.29 -0.11 16 30 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.07 -0.09 6.30 -51.93 -0.33 -0.42 16 32 H 0.11 0.28 7.58 -51.93 -0.39 -0.11 16 33 H 0.41 -0.04 7.73 -40.82 -0.32 -0.35 16 34 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 35 H 0.14 -0.53 8.06 -52.49 -0.42 -0.96 16 36 H 0.40 -0.69 8.45 -40.82 -0.34 -1.03 16 37 H 0.08 0.18 8.08 -51.93 -0.42 -0.24 16 38 H 0.07 0.13 8.08 -51.93 -0.42 -0.29 16 39 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 40 H 0.13 -0.16 6.30 -52.49 -0.33 -0.49 16 41 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 42 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 43 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 44 H 0.13 0.05 8.06 -52.49 -0.42 -0.38 16 45 H 0.13 -0.09 8.06 -52.49 -0.42 -0.52 16 46 H 0.34 -0.44 8.23 -40.82 -0.34 -0.77 16 LS Contribution 380.75 15.07 5.74 5.74 Total: 0.00 -8.75 380.75 -8.47 -17.22 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -6.57 Total: -8.16 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.33 Total: 0.96 kcal Atomic # 7 Polarization: -1.57 SS G_CDS: 0.08 Total: -1.49 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.67 Total: -8.30 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: -4.72 Total: -5.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -8.75 -8.47 -17.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900471880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.537 kcal (2) G-P(sol) polarization free energy of solvation -8.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds