Wall clock time and date at job start Tue Mar 31 2020 16:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 N 1.46503 * 109.47040 * 295.00123 * 3 2 1 5 5 C 1.34775 * 119.99868 * 84.99725 * 4 3 2 6 6 O 1.21536 * 120.00171 * 0.02562 * 5 4 3 7 7 C 1.47653 * 119.99846 * 179.97438 * 5 4 3 8 8 C 1.34205 * 119.99918 * 188.42046 * 7 5 4 9 9 C 1.47646 * 120.00224 * 30.64663 * 8 7 5 10 10 O 1.21536 * 119.99568 * 6.00982 * 9 8 7 11 11 N 1.34777 * 119.99918 * 186.00286 * 9 8 7 12 12 C 1.46499 * 119.99577 * 179.72676 * 11 9 8 13 13 C 1.50701 * 109.46888 * 180.27563 * 12 11 9 14 14 C 1.38265 * 119.94624 * 269.72811 * 13 12 11 15 15 C 1.38142 * 120.05501 * 179.72843 * 14 13 12 16 16 C 1.38734 * 119.94487 * 0.56548 * 15 14 13 17 17 O 1.35899 * 120.05642 * 179.68590 * 16 15 14 18 18 C 1.42892 * 117.00099 * 0.02562 * 17 16 15 19 19 C 1.38737 * 119.88766 * 359.70734 * 16 15 14 20 20 C 1.38144 * 119.94255 * 0.02562 * 19 16 15 21 21 C 1.50706 * 109.47049 * 175.00056 * 3 2 1 22 22 N 1.27941 * 119.99551 * 124.99801 * 21 3 2 23 23 Si 1.86789 * 119.99809 * 305.00014 * 21 3 2 24 24 H 1.48497 * 109.47715 * 60.00125 * 23 21 3 25 25 H 1.48508 * 109.47145 * 179.97438 * 23 21 3 26 26 H 1.48500 * 109.47237 * 299.99839 * 23 21 3 27 27 H 1.08996 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46497 * 299.99920 * 1 2 3 29 29 H 1.09000 * 109.46929 * 59.99671 * 1 2 3 30 30 H 1.09004 * 109.46712 * 239.99625 * 2 1 3 31 31 H 1.09000 * 109.46929 * 120.00329 * 2 1 3 32 32 H 1.08998 * 109.47133 * 55.00297 * 3 2 1 33 33 H 0.97000 * 119.99958 * 264.99996 * 4 3 2 34 34 H 1.07999 * 119.99721 * 8.41955 * 7 5 4 35 35 H 1.08000 * 119.99816 * 210.65684 * 8 7 5 36 36 H 0.96998 * 119.99928 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47430 * 300.27850 * 12 11 9 38 38 H 1.09007 * 109.47110 * 60.28134 * 12 11 9 39 39 H 1.07994 * 119.97161 * 359.97438 * 14 13 12 40 40 H 1.08000 * 120.02686 * 180.25194 * 15 14 13 41 41 H 1.09005 * 109.47498 * 180.02562 * 18 17 16 42 42 H 1.09004 * 109.46937 * 299.99522 * 18 17 16 43 43 H 1.08990 * 109.47322 * 60.00100 * 18 17 16 44 44 H 1.07994 * 120.02785 * 179.97438 * 19 16 15 45 45 H 1.07997 * 119.97386 * 180.02562 * 20 19 16 46 46 H 0.96998 * 119.99681 * 179.97438 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.6525 2.0975 -1.2518 5 6 0.4352 2.6643 -1.3669 6 8 -0.3408 2.6326 -0.4321 7 6 0.0448 3.3250 -2.6284 8 6 -1.0931 4.0338 -2.6904 9 6 -1.5976 4.7268 -1.4883 10 8 -0.9295 4.7472 -0.4733 11 7 -2.7991 5.3370 -1.5166 12 6 -3.3023 6.0195 -0.3220 13 6 -4.6585 6.6083 -0.6137 14 6 -4.7604 7.8970 -1.1042 15 6 -6.0022 8.4369 -1.3776 16 6 -7.1482 7.6893 -1.1486 17 8 -8.3712 8.2205 -1.4108 18 6 -8.4030 9.5547 -1.9215 19 6 -7.0434 6.3984 -0.6511 20 6 -5.7990 5.8610 -0.3845 21 6 3.5421 1.4442 0.1238 22 7 4.2549 2.0538 -0.7463 23 14 4.3628 0.5563 1.5476 24 1 4.0083 -0.8850 1.5027 25 1 5.8364 0.7066 1.4413 26 1 3.8964 1.1410 2.8305 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6055 1.9815 0.8418 33 1 2.2720 2.1231 -1.9978 34 1 0.6750 3.2377 -3.5011 35 1 -1.6398 4.0972 -3.6196 36 1 -3.3324 5.3205 -2.3267 37 1 -3.3848 5.3050 0.4971 38 1 -2.6131 6.8160 -0.0412 39 1 -3.8684 8.4805 -1.2774 40 1 -6.0811 9.4421 -1.7646 41 1 -9.4375 9.8561 -2.0863 42 1 -7.9384 10.2299 -1.2029 43 1 -7.8576 9.5960 -2.8642 44 1 -7.9340 5.8145 -0.4716 45 1 -5.7169 4.8561 0.0025 46 1 5.2216 2.0553 -0.6664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900471880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:31 Heat of formation + Delta-G solvation = -23.841875 kcal Electronic energy + Delta-G solvation = -27694.768457 eV Core-core repulsion = 23666.362512 eV Total energy + Delta-G solvation = -4028.405945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37436 -41.10636 -40.21765 -38.71795 -37.83919 -35.64913 -34.95637 -34.12151 -33.06534 -32.17118 -31.68940 -28.74595 -28.45118 -26.92078 -24.80059 -23.67394 -23.01603 -22.36988 -22.05193 -21.05767 -20.34936 -19.19520 -19.01918 -18.01362 -17.35643 -17.26006 -17.03472 -16.72051 -16.68190 -16.16280 -15.99588 -15.93341 -15.38380 -15.16667 -14.83323 -14.75701 -14.59249 -14.50033 -14.30651 -14.30191 -14.06466 -13.83470 -13.56292 -13.40854 -12.85466 -12.82958 -12.55971 -12.53678 -12.43561 -12.34876 -12.04689 -11.79628 -11.69872 -11.48681 -11.19000 -10.90419 -10.15394 -10.12563 -10.03676 -9.96685 -9.73751 -9.21429 -0.28806 0.24069 0.31996 0.73265 0.99578 1.41268 1.71566 1.85119 2.05340 2.25821 2.32889 2.43570 2.56087 2.82678 3.29143 3.67093 3.76575 3.89621 3.89782 3.92814 4.07313 4.15274 4.15442 4.33128 4.36151 4.36238 4.36388 4.44397 4.55089 4.64912 4.67367 4.72938 4.74052 4.87567 4.91655 4.92969 5.02270 5.06105 5.09907 5.19207 5.21763 5.30557 5.43295 5.46005 5.56061 5.59549 5.72366 6.37758 6.60599 6.72812 6.80331 7.32166 7.48436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.170 3.830 4 N -0.703 5.703 5 C 0.520 3.480 6 O -0.537 6.537 7 C -0.129 4.129 8 C -0.130 4.130 9 C 0.522 3.478 10 O -0.551 6.551 11 N -0.712 5.712 12 C 0.175 3.825 13 C -0.147 4.147 14 C -0.060 4.060 15 C -0.212 4.212 16 C 0.121 3.879 17 O -0.337 6.337 18 C 0.018 3.982 19 C -0.167 4.167 20 C -0.062 4.062 21 C -0.017 4.017 22 N -0.641 5.641 23 Si 0.977 3.023 24 H -0.223 1.223 25 H -0.250 1.250 26 H -0.249 1.249 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.415 0.585 34 H 0.184 0.816 35 H 0.188 0.812 36 H 0.413 0.587 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 0.005 -5.684 5.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.064 3.936 4 N -0.357 5.357 5 C 0.308 3.692 6 O -0.415 6.415 7 C -0.151 4.151 8 C -0.152 4.152 9 C 0.310 3.690 10 O -0.428 6.428 11 N -0.366 5.366 12 C 0.051 3.949 13 C -0.148 4.148 14 C -0.079 4.079 15 C -0.231 4.231 16 C 0.076 3.924 17 O -0.251 6.251 18 C -0.076 4.076 19 C -0.185 4.185 20 C -0.080 4.080 21 C -0.265 4.265 22 N -0.256 5.256 23 Si 0.792 3.208 24 H -0.146 1.146 25 H -0.173 1.173 26 H -0.172 1.172 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.201 0.799 35 H 0.205 0.795 36 H 0.250 0.750 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.708 0.070 -4.433 4.490 hybrid contribution 0.438 0.346 -0.260 0.616 sum 1.146 0.417 -4.693 4.849 Atomic orbital electron populations 1.21712 0.95263 1.00923 1.01706 1.21961 0.96552 0.94305 1.04111 1.20298 0.90161 0.94635 0.88547 1.45749 1.15777 1.57419 1.16755 1.19188 0.82110 0.79498 0.88428 1.90849 1.51955 1.58584 1.40082 1.23749 0.96403 0.96448 0.98550 1.23661 0.95735 0.96553 0.99215 1.19314 0.81379 0.79781 0.88529 1.90859 1.57868 1.60222 1.33886 1.45910 1.18983 1.55747 1.15927 1.19922 0.91204 0.95973 0.87780 1.19692 0.94086 0.95528 1.05483 1.21069 0.97615 0.94255 0.94911 1.21467 0.91940 1.01970 1.07685 1.19357 0.84590 0.93443 0.95056 1.86064 1.26721 1.32570 1.79769 1.23340 1.05493 0.79774 0.99027 1.20632 0.99013 0.93999 1.04865 1.21041 0.90708 0.99898 0.96350 1.30799 0.98319 0.95691 1.01665 1.67945 1.13853 1.15185 1.28628 0.85126 0.78704 0.81076 0.75937 1.14562 1.17346 1.17242 0.92193 0.93867 0.93748 0.89889 0.89241 0.89174 0.74742 0.79900 0.79503 0.75004 0.92132 0.91465 0.84104 0.83506 0.86671 0.91725 0.91452 0.84579 0.84269 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.51 71.98 0.61 -0.08 16 2 C -0.13 -0.08 5.30 30.60 0.16 0.08 16 3 C 0.17 0.55 2.37 44.25 0.10 0.66 16 4 N -0.70 -2.46 4.85 -449.19 -2.18 -4.64 16 5 C 0.52 3.96 5.71 86.73 0.49 4.46 16 6 O -0.54 -8.44 10.53 19.86 0.21 -8.23 16 7 C -0.13 -0.01 9.94 23.84 0.24 0.23 16 8 C -0.13 0.08 9.93 23.84 0.24 0.31 16 9 C 0.52 3.88 7.20 86.73 0.62 4.51 16 10 O -0.55 -9.76 13.32 19.86 0.26 -9.49 16 11 N -0.71 -1.37 5.55 -469.93 -2.61 -3.98 16 12 C 0.17 0.66 5.80 85.63 0.50 1.15 16 13 C -0.15 -0.22 5.25 -19.85 -0.10 -0.32 16 14 C -0.06 -0.01 9.69 22.25 0.22 0.20 16 15 C -0.21 -0.14 9.04 22.37 0.20 0.06 16 16 C 0.12 0.46 6.69 22.51 0.15 0.61 16 17 O -0.34 -1.37 10.50 -92.41 -0.97 -2.34 16 18 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 19 C -0.17 -0.55 9.99 22.37 0.22 -0.33 16 20 C -0.06 -0.11 9.69 22.25 0.22 0.10 16 21 C -0.02 0.00 5.37 88.68 0.48 0.48 16 22 N -0.64 -0.22 12.48 24.11 0.30 0.08 16 23 Si 0.98 -2.80 27.80 68.60 1.91 -0.89 16 24 H -0.22 0.89 6.94 99.48 0.69 1.58 16 25 H -0.25 0.58 7.11 99.48 0.71 1.29 16 26 H -0.25 0.02 7.11 99.48 0.71 0.73 16 27 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.04 0.39 7.85 -2.38 -0.02 0.38 16 29 H 0.04 0.35 5.64 -2.39 -0.01 0.34 16 30 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 31 H 0.09 -0.24 6.30 -2.39 -0.02 -0.25 16 32 H 0.09 0.70 7.58 -2.39 -0.02 0.68 16 33 H 0.41 -0.08 7.73 -92.71 -0.72 -0.80 16 34 H 0.18 -1.56 8.06 -2.91 -0.02 -1.58 16 35 H 0.19 -1.88 8.06 -2.91 -0.02 -1.90 16 36 H 0.41 -1.59 8.45 -92.71 -0.78 -2.38 16 37 H 0.06 0.44 8.08 -2.39 -0.02 0.42 16 38 H 0.07 0.35 8.08 -2.38 -0.02 0.33 16 39 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 40 H 0.15 -0.50 6.30 -2.91 -0.02 -0.52 16 41 H 0.12 -0.76 8.14 -2.38 -0.02 -0.78 16 42 H 0.06 -0.33 7.66 -2.38 -0.02 -0.35 16 43 H 0.07 -0.39 7.66 -2.39 -0.02 -0.40 16 44 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 45 H 0.14 -0.04 8.06 -2.91 -0.02 -0.06 16 46 H 0.35 -0.99 8.23 -92.71 -0.76 -1.76 16 Total: 0.00 -23.50 380.75 1.89 -21.61 By element: Atomic # 1 Polarization: -4.80 SS G_CDS: -0.49 Total: -5.29 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 5.46 Total: 13.17 kcal Atomic # 7 Polarization: -4.05 SS G_CDS: -4.49 Total: -8.54 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.50 Total: -20.07 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 1.91 Total: -0.89 kcal Total: -23.50 1.89 -21.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900471880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.231 kcal (2) G-P(sol) polarization free energy of solvation -23.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds