Wall clock time and date at job start Tue Mar 31 2020 18:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99814 * 2 1 4 4 C 1.38742 * 120.05397 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94224 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05697 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94093 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46815 * 90.00529 * 7 6 5 9 9 C 1.34779 * 119.99563 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00203 * 359.97438 * 9 8 7 11 11 C 1.47650 * 119.99591 * 179.97438 * 9 8 7 12 12 C 1.34207 * 119.99984 * 188.41919 * 11 9 8 13 13 C 1.47641 * 120.00054 * 30.64598 * 12 11 9 14 14 O 1.21543 * 120.00237 * 6.00427 * 13 12 11 15 15 N 1.34774 * 120.00123 * 185.73280 * 13 12 11 16 16 C 1.46498 * 120.00180 * 180.27530 * 15 13 12 17 17 C 1.52998 * 109.47398 * 180.02562 * 16 15 13 18 18 C 1.53008 * 109.46915 * 64.99840 * 17 16 15 19 19 C 1.50700 * 109.47684 * 184.99747 * 17 16 15 20 20 N 1.27942 * 119.99712 * 335.00778 * 19 17 16 21 21 Si 1.86795 * 120.00132 * 154.99429 * 19 17 16 22 22 H 1.48501 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46952 * 120.00485 * 21 19 17 24 24 H 1.48494 * 109.47472 * 240.00331 * 21 19 17 25 25 C 1.38263 * 120.11305 * 0.25353 * 6 5 4 26 26 C 1.38156 * 120.05237 * 359.45121 * 25 6 5 27 27 H 1.08999 * 109.47037 * 59.99500 * 1 2 3 28 28 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47005 * 299.99621 * 1 2 3 30 30 H 1.08004 * 120.02411 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97007 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47253 * 330.00269 * 7 6 5 33 33 H 1.09004 * 109.46612 * 209.99924 * 7 6 5 34 34 H 0.96996 * 119.99891 * 359.97438 * 8 7 6 35 35 H 1.08004 * 120.00127 * 8.41383 * 11 9 8 36 36 H 1.08000 * 119.99834 * 210.65609 * 12 11 9 37 37 H 0.96997 * 120.00183 * 0.28017 * 15 13 12 38 38 H 1.09006 * 109.47569 * 299.99876 * 16 15 13 39 39 H 1.08999 * 109.47568 * 59.99834 * 16 15 13 40 40 H 1.09006 * 109.47256 * 305.00527 * 17 16 15 41 41 H 1.09005 * 109.46862 * 180.02562 * 18 17 16 42 42 H 1.09000 * 109.47165 * 300.00008 * 18 17 16 43 43 H 1.08998 * 109.46833 * 60.00911 * 18 17 16 44 44 H 0.96998 * 119.99657 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.97253 * 179.70385 * 25 6 5 46 46 H 1.08004 * 120.02452 * 180.24842 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2071 5.4551 -1.3781 9 6 4.8081 6.6363 -1.6233 10 8 5.1664 7.3394 -0.6989 11 6 5.0313 7.0761 -3.0150 12 6 5.7761 8.1645 -3.2635 13 6 6.8800 8.5274 -2.3527 14 8 7.1849 7.7838 -1.4409 15 7 7.5532 9.6805 -2.5357 16 6 8.6525 10.0377 -1.6356 17 6 9.2419 11.3844 -2.0597 18 6 8.1925 12.4820 -1.8724 19 6 10.4491 11.6938 -1.2122 20 7 10.5615 11.1782 -0.0467 21 14 11.7812 12.8297 -1.8636 22 1 11.4155 13.2908 -3.2270 23 1 11.9145 14.0033 -0.9636 24 1 13.0725 12.0984 -1.9178 25 6 1.9211 3.6048 0.0080 26 6 1.2915 2.3751 0.0013 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0209 0.3799 -0.0005 31 1 5.1345 2.5750 0.0000 32 1 4.9443 4.9376 0.5160 33 1 3.3583 5.7457 0.5177 34 1 3.9208 4.8942 -2.1158 35 1 4.5953 6.5218 -3.8330 36 1 5.5678 8.7751 -4.1297 37 1 7.3099 10.2740 -3.2633 38 1 8.2772 10.1111 -0.6148 39 1 9.4257 9.2709 -1.6841 40 1 9.5362 11.3382 -3.1082 41 1 8.6123 13.4414 -2.1750 42 1 7.3194 12.2583 -2.4854 43 1 7.8983 12.5282 -0.8239 44 1 11.3387 11.3770 0.4986 45 1 1.3343 4.5114 0.0140 46 1 0.2129 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900651147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:30 Heat of formation + Delta-G solvation = -32.482966 kcal Electronic energy + Delta-G solvation = -27013.851496 eV Core-core repulsion = 22985.070845 eV Total energy + Delta-G solvation = -4028.780651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24155 -40.88525 -39.89494 -38.66543 -38.18356 -35.55804 -35.24987 -33.93467 -32.70773 -32.14045 -31.63410 -28.70554 -27.87796 -26.75202 -25.21768 -23.83061 -23.60969 -22.18867 -21.83381 -20.80264 -19.94423 -19.16556 -18.89882 -17.99189 -17.32761 -17.11972 -17.02316 -16.69940 -16.28036 -16.15352 -15.85620 -15.77955 -15.35361 -15.24268 -14.91583 -14.73393 -14.58910 -14.55742 -14.45785 -14.25206 -13.91162 -13.62398 -13.57772 -13.31958 -13.22125 -12.91666 -12.77545 -12.47382 -12.32176 -12.28730 -12.06689 -11.92233 -11.79650 -11.40495 -10.98272 -10.77501 -10.04155 -10.00643 -9.91724 -9.81357 -9.68016 -9.15424 -0.26999 0.30406 0.36022 0.77900 1.00621 1.35443 1.66478 1.78269 2.21749 2.28602 2.34430 2.44041 2.67349 2.88725 3.45345 3.73210 3.78446 3.84089 3.89125 3.90655 3.95367 4.07546 4.09539 4.17959 4.23874 4.26060 4.34106 4.35948 4.51157 4.61357 4.68128 4.75645 4.80774 4.83518 4.89465 4.96072 4.99676 5.03481 5.05830 5.23782 5.24561 5.34065 5.36182 5.56611 5.61857 5.66493 5.75090 6.38503 6.67292 6.71559 6.86750 7.44334 7.58931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.135 3.865 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.148 4.148 7 C 0.168 3.832 8 N -0.726 5.726 9 C 0.532 3.468 10 O -0.496 6.496 11 C -0.129 4.129 12 C -0.128 4.128 13 C 0.530 3.470 14 O -0.497 6.497 15 N -0.731 5.731 16 C 0.138 3.862 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.002 4.002 20 N -0.622 5.622 21 Si 0.933 3.067 22 H -0.232 1.232 23 H -0.243 1.243 24 H -0.243 1.243 25 C -0.059 4.059 26 C -0.211 4.211 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.400 0.600 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.397 0.603 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.338 0.662 45 H 0.127 0.873 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 1.764 -6.292 7.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.090 3.910 4 C -0.172 4.172 5 C -0.078 4.078 6 C -0.149 4.149 7 C 0.046 3.954 8 N -0.379 5.379 9 C 0.318 3.682 10 O -0.370 6.370 11 C -0.152 4.152 12 C -0.151 4.151 13 C 0.316 3.684 14 O -0.370 6.370 15 N -0.385 5.385 16 C 0.015 3.985 17 C -0.094 4.094 18 C -0.202 4.202 19 C -0.252 4.252 20 N -0.235 5.235 21 Si 0.748 3.252 22 H -0.154 1.154 23 H -0.166 1.166 24 H -0.166 1.166 25 C -0.078 4.078 26 C -0.230 4.230 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.231 0.769 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.962 1.440 -4.612 5.214 hybrid contribution -0.104 0.358 -0.746 0.834 sum -2.066 1.798 -5.357 6.017 Atomic orbital electron populations 1.23110 0.77963 1.04322 1.01509 1.86097 1.21739 1.26844 1.88323 1.19145 0.92461 0.84298 0.95129 1.20485 0.91421 0.98833 1.06464 1.20951 1.00118 0.90825 0.95863 1.19774 0.93684 0.94695 1.06737 1.20076 1.00352 0.91677 0.83342 1.45989 1.62543 1.20783 1.08619 1.18664 0.78508 0.81499 0.89542 1.90888 1.47413 1.53414 1.45315 1.23410 0.99414 0.96107 0.96262 1.23430 0.94419 0.96255 1.00956 1.18620 0.83536 0.81726 0.84473 1.90890 1.66500 1.49861 1.29779 1.45944 1.36210 1.22192 1.34119 1.21218 0.88545 0.94437 0.94331 1.20710 0.93612 0.95891 0.99235 1.21785 0.97734 0.97435 1.03235 1.30159 1.01614 0.98033 0.95413 1.68197 1.27542 1.21410 1.06306 0.85686 0.77803 0.79195 0.82486 1.15415 1.16568 1.16614 1.20894 0.93764 0.97251 0.95861 1.21271 1.00287 0.92228 1.09171 0.92468 0.87959 0.92441 0.84866 0.84961 0.90461 0.90727 0.76620 0.83671 0.83668 0.76859 0.90093 0.91431 0.88662 0.91895 0.91576 0.91638 0.84468 0.85485 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.64 10.50 -19.42 -0.20 -0.84 16 3 C 0.14 0.25 6.69 -39.21 -0.26 -0.01 16 4 C -0.15 -0.23 9.99 -39.43 -0.39 -0.62 16 5 C -0.06 -0.05 9.69 -39.61 -0.38 -0.43 16 6 C -0.15 -0.11 5.25 -104.60 -0.55 -0.66 16 7 C 0.17 0.27 5.80 -5.19 -0.03 0.24 16 8 N -0.73 -0.76 5.55 -62.50 -0.35 -1.10 16 9 C 0.53 1.94 7.14 -12.42 -0.09 1.85 16 10 O -0.50 -4.15 13.39 -19.44 -0.26 -4.41 16 11 C -0.13 -0.01 9.94 -37.16 -0.37 -0.38 16 12 C -0.13 0.01 9.93 -37.17 -0.37 -0.36 16 13 C 0.53 1.92 7.20 -12.42 -0.09 1.83 16 14 O -0.50 -4.28 13.32 -19.45 -0.26 -4.54 16 15 N -0.73 -0.41 5.28 -61.32 -0.32 -0.73 16 16 C 0.14 0.24 4.45 -4.04 -0.02 0.22 16 17 C -0.07 0.10 2.35 -91.77 -0.22 -0.12 16 18 C -0.14 0.29 8.99 37.16 0.33 0.63 16 19 C 0.00 0.00 4.83 -13.90 -0.07 -0.07 16 20 N -0.62 -0.85 12.81 56.23 0.72 -0.13 16 21 Si 0.93 -1.59 29.29 -169.99 -4.98 -6.57 16 22 H -0.23 0.45 7.11 56.52 0.40 0.85 16 23 H -0.24 0.16 7.11 56.52 0.40 0.57 16 24 H -0.24 0.13 7.11 56.52 0.40 0.53 16 25 C -0.06 -0.02 9.69 -39.60 -0.38 -0.40 16 26 C -0.21 -0.13 9.04 -39.43 -0.36 -0.48 16 27 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 28 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 29 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 30 H 0.13 0.08 8.06 -52.48 -0.42 -0.35 16 31 H 0.13 -0.04 8.06 -52.49 -0.42 -0.46 16 32 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.07 0.16 8.08 -51.93 -0.42 -0.26 16 34 H 0.40 -0.60 8.45 -40.82 -0.34 -0.95 16 35 H 0.15 -0.57 8.06 -52.48 -0.42 -0.99 16 36 H 0.15 -0.63 8.06 -52.49 -0.42 -1.05 16 37 H 0.40 -1.20 7.64 -40.82 -0.31 -1.51 16 38 H 0.08 0.37 7.98 -51.93 -0.41 -0.04 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 -0.34 7.85 -51.93 -0.41 -0.75 16 41 H 0.06 -0.20 7.95 -51.93 -0.41 -0.61 16 42 H 0.07 -0.21 7.18 -51.93 -0.37 -0.58 16 43 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 44 H 0.34 -0.09 8.23 -40.82 -0.34 -0.43 16 45 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 46 H 0.13 -0.15 6.30 -52.48 -0.33 -0.48 16 LS Contribution 390.04 15.07 5.88 5.88 Total: 0.00 -11.18 390.04 -8.77 -19.95 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: -6.74 Total: -9.70 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -2.25 Total: 2.19 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: 0.05 Total: -1.96 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.72 Total: -9.79 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: -4.98 Total: -6.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -11.18 -8.77 -19.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900651147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.529 kcal (2) G-P(sol) polarization free energy of solvation -11.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds