Wall clock time and date at job start Tue Mar 31 2020 18:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99814 * 2 1 4 4 C 1.38742 * 120.05397 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94224 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05697 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94093 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46815 * 90.00529 * 7 6 5 9 9 C 1.34779 * 119.99563 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00203 * 359.97438 * 9 8 7 11 11 C 1.47650 * 119.99591 * 179.97438 * 9 8 7 12 12 C 1.34207 * 119.99984 * 188.41919 * 11 9 8 13 13 C 1.47641 * 120.00054 * 30.64598 * 12 11 9 14 14 O 1.21543 * 120.00237 * 6.00427 * 13 12 11 15 15 N 1.34774 * 120.00123 * 185.73280 * 13 12 11 16 16 C 1.46498 * 120.00180 * 180.27530 * 15 13 12 17 17 C 1.52998 * 109.47398 * 180.02562 * 16 15 13 18 18 C 1.53008 * 109.46915 * 64.99840 * 17 16 15 19 19 C 1.50700 * 109.47684 * 184.99747 * 17 16 15 20 20 N 1.27942 * 119.99712 * 335.00778 * 19 17 16 21 21 Si 1.86795 * 120.00132 * 154.99429 * 19 17 16 22 22 H 1.48501 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46952 * 120.00485 * 21 19 17 24 24 H 1.48494 * 109.47472 * 240.00331 * 21 19 17 25 25 C 1.38263 * 120.11305 * 0.25353 * 6 5 4 26 26 C 1.38156 * 120.05237 * 359.45121 * 25 6 5 27 27 H 1.08999 * 109.47037 * 59.99500 * 1 2 3 28 28 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47005 * 299.99621 * 1 2 3 30 30 H 1.08004 * 120.02411 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97007 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47253 * 330.00269 * 7 6 5 33 33 H 1.09004 * 109.46612 * 209.99924 * 7 6 5 34 34 H 0.96996 * 119.99891 * 359.97438 * 8 7 6 35 35 H 1.08004 * 120.00127 * 8.41383 * 11 9 8 36 36 H 1.08000 * 119.99834 * 210.65609 * 12 11 9 37 37 H 0.96997 * 120.00183 * 0.28017 * 15 13 12 38 38 H 1.09006 * 109.47569 * 299.99876 * 16 15 13 39 39 H 1.08999 * 109.47568 * 59.99834 * 16 15 13 40 40 H 1.09006 * 109.47256 * 305.00527 * 17 16 15 41 41 H 1.09005 * 109.46862 * 180.02562 * 18 17 16 42 42 H 1.09000 * 109.47165 * 300.00008 * 18 17 16 43 43 H 1.08998 * 109.46833 * 60.00911 * 18 17 16 44 44 H 0.96998 * 119.99657 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.97253 * 179.70385 * 25 6 5 46 46 H 1.08004 * 120.02452 * 180.24842 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2071 5.4551 -1.3781 9 6 4.8081 6.6363 -1.6233 10 8 5.1664 7.3394 -0.6989 11 6 5.0313 7.0761 -3.0150 12 6 5.7761 8.1645 -3.2635 13 6 6.8800 8.5274 -2.3527 14 8 7.1849 7.7838 -1.4409 15 7 7.5532 9.6805 -2.5357 16 6 8.6525 10.0377 -1.6356 17 6 9.2419 11.3844 -2.0597 18 6 8.1925 12.4820 -1.8724 19 6 10.4491 11.6938 -1.2122 20 7 10.5615 11.1782 -0.0467 21 14 11.7812 12.8297 -1.8636 22 1 11.4155 13.2908 -3.2270 23 1 11.9145 14.0033 -0.9636 24 1 13.0725 12.0984 -1.9178 25 6 1.9211 3.6048 0.0080 26 6 1.2915 2.3751 0.0013 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0209 0.3799 -0.0005 31 1 5.1345 2.5750 0.0000 32 1 4.9443 4.9376 0.5160 33 1 3.3583 5.7457 0.5177 34 1 3.9208 4.8942 -2.1158 35 1 4.5953 6.5218 -3.8330 36 1 5.5678 8.7751 -4.1297 37 1 7.3099 10.2740 -3.2633 38 1 8.2772 10.1111 -0.6148 39 1 9.4257 9.2709 -1.6841 40 1 9.5362 11.3382 -3.1082 41 1 8.6123 13.4414 -2.1750 42 1 7.3194 12.2583 -2.4854 43 1 7.8983 12.5282 -0.8239 44 1 11.3387 11.3770 0.4986 45 1 1.3343 4.5114 0.0140 46 1 0.2129 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900651147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:29 Heat of formation + Delta-G solvation = -34.281390 kcal Electronic energy + Delta-G solvation = -27013.929482 eV Core-core repulsion = 22985.070845 eV Total energy + Delta-G solvation = -4028.858636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34935 -41.04036 -40.09618 -38.72994 -38.26225 -35.72986 -35.44111 -34.02693 -32.73509 -32.18262 -31.71377 -28.67104 -27.92119 -26.81184 -25.23819 -23.90240 -23.65334 -22.28152 -22.02636 -20.89769 -19.99807 -19.19389 -18.99668 -18.00723 -17.38404 -17.22638 -17.21603 -16.68574 -16.38417 -16.30387 -16.04164 -15.83066 -15.34207 -15.31290 -14.99759 -14.77131 -14.75284 -14.50453 -14.48002 -14.19791 -13.96710 -13.68838 -13.58488 -13.45265 -13.37758 -12.86017 -12.65179 -12.55453 -12.31054 -12.14431 -12.05331 -11.85943 -11.80406 -11.42816 -11.26711 -10.99194 -10.16261 -10.12911 -10.04534 -9.92450 -9.77080 -9.22443 -0.30632 0.22907 0.30977 0.83371 1.09866 1.50645 1.77641 1.88052 2.00304 2.23773 2.32209 2.35411 2.52644 2.81376 3.49995 3.65477 3.75537 3.88795 3.88930 3.90744 3.96477 4.08742 4.14075 4.32080 4.33681 4.35683 4.36331 4.44846 4.53684 4.64978 4.72033 4.72846 4.77205 4.85565 4.87552 4.91182 5.01253 5.03511 5.13257 5.18516 5.23445 5.29531 5.39837 5.41556 5.53335 5.54953 5.71113 6.37183 6.58250 6.67197 6.92601 7.29924 7.44284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.122 3.878 4 C -0.166 4.166 5 C -0.063 4.063 6 C -0.148 4.148 7 C 0.173 3.827 8 N -0.712 5.712 9 C 0.519 3.481 10 O -0.554 6.554 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.515 3.485 14 O -0.559 6.559 15 N -0.713 5.713 16 C 0.145 3.855 17 C -0.073 4.073 18 C -0.143 4.143 19 C -0.007 4.007 20 N -0.663 5.663 21 Si 0.983 3.017 22 H -0.213 1.213 23 H -0.258 1.258 24 H -0.262 1.262 25 C -0.059 4.059 26 C -0.211 4.211 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.414 0.586 35 H 0.193 0.807 36 H 0.198 0.802 37 H 0.418 0.582 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.342 0.658 45 H 0.142 0.858 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 2.693 -9.258 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.076 3.924 4 C -0.185 4.185 5 C -0.081 4.081 6 C -0.148 4.148 7 C 0.050 3.950 8 N -0.366 5.366 9 C 0.307 3.693 10 O -0.432 6.432 11 C -0.153 4.153 12 C -0.146 4.146 13 C 0.303 3.697 14 O -0.437 6.437 15 N -0.368 5.368 16 C 0.020 3.980 17 C -0.093 4.093 18 C -0.202 4.202 19 C -0.254 4.254 20 N -0.276 5.276 21 Si 0.798 3.202 22 H -0.134 1.134 23 H -0.182 1.182 24 H -0.186 1.186 25 C -0.077 4.077 26 C -0.230 4.230 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.210 0.790 36 H 0.215 0.785 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.187 2.368 -7.643 8.613 hybrid contribution 0.249 0.031 0.235 0.344 sum -2.938 2.399 -7.408 8.323 Atomic orbital electron populations 1.23348 0.76355 1.05559 1.02389 1.86067 1.23546 1.27106 1.88404 1.19346 0.92743 0.84803 0.95481 1.20623 0.91785 0.99119 1.06963 1.21029 1.00491 0.90767 0.95828 1.19681 0.94008 0.93929 1.07219 1.19922 0.99262 0.92141 0.83686 1.45920 1.61512 1.20312 1.08837 1.19453 0.77657 0.81368 0.90843 1.90867 1.49793 1.55207 1.47378 1.23738 1.00089 0.96277 0.95161 1.23774 0.92909 0.96447 1.01424 1.19473 0.84424 0.81624 0.84223 1.90867 1.68345 1.51907 1.32560 1.45822 1.35184 1.21716 1.34041 1.21001 0.88196 0.95792 0.92990 1.20868 0.93509 0.94096 1.00805 1.21808 0.98129 0.98051 1.02170 1.30704 1.02306 0.97563 0.94854 1.68263 1.28486 1.23200 1.07694 0.84979 0.75500 0.77157 0.82547 1.13442 1.18242 1.18630 1.21071 0.93547 0.97891 0.95219 1.21474 1.01230 0.91735 1.08526 0.91386 0.86677 0.91696 0.84599 0.84483 0.92507 0.91362 0.74908 0.78968 0.78520 0.74393 0.93927 0.93622 0.85226 0.89862 0.90007 0.93985 0.84095 0.83975 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.44 10.50 -92.39 -0.97 -2.41 16 3 C 0.12 0.50 6.69 22.51 0.15 0.65 16 4 C -0.17 -0.65 9.99 22.37 0.22 -0.43 16 5 C -0.06 -0.17 9.69 22.25 0.22 0.04 16 6 C -0.15 -0.34 5.25 -19.85 -0.10 -0.44 16 7 C 0.17 0.87 5.80 85.63 0.50 1.37 16 8 N -0.71 -2.04 5.55 -469.93 -2.61 -4.65 16 9 C 0.52 4.37 7.14 86.73 0.62 4.99 16 10 O -0.55 -10.93 13.39 19.86 0.27 -10.66 16 11 C -0.13 0.15 9.94 23.84 0.24 0.39 16 12 C -0.12 0.20 9.93 23.83 0.24 0.44 16 13 C 0.51 4.26 7.20 86.73 0.62 4.88 16 14 O -0.56 -11.45 13.32 19.84 0.26 -11.19 16 15 N -0.71 -1.04 5.28 -466.21 -2.46 -3.50 16 16 C 0.14 0.78 4.45 86.38 0.38 1.17 16 17 C -0.07 0.20 2.35 -11.54 -0.03 0.17 16 18 C -0.14 0.68 8.99 71.98 0.65 1.32 16 19 C -0.01 0.00 4.83 88.68 0.43 0.43 16 20 N -0.66 -3.38 12.81 24.11 0.31 -3.07 16 21 Si 0.98 -4.08 29.29 68.60 2.01 -2.07 16 22 H -0.21 1.48 7.11 99.48 0.71 2.19 16 23 H -0.26 0.40 7.11 99.48 0.71 1.11 16 24 H -0.26 0.27 7.11 99.48 0.71 0.98 16 25 C -0.06 -0.03 9.69 22.26 0.22 0.19 16 26 C -0.21 -0.18 9.04 22.37 0.20 0.03 16 27 H 0.07 -0.39 7.66 -2.39 -0.02 -0.41 16 28 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.06 -0.33 7.66 -2.39 -0.02 -0.35 16 30 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 31 H 0.14 0.14 8.06 -2.91 -0.02 0.12 16 32 H 0.06 0.52 8.08 -2.39 -0.02 0.50 16 33 H 0.07 0.43 8.08 -2.38 -0.02 0.41 16 34 H 0.41 -1.40 8.45 -92.71 -0.78 -2.18 16 35 H 0.19 -2.17 8.06 -2.91 -0.02 -2.19 16 36 H 0.20 -2.50 8.06 -2.91 -0.02 -2.53 16 37 H 0.42 -3.20 7.64 -92.71 -0.71 -3.90 16 38 H 0.04 0.57 7.98 -2.38 -0.02 0.55 16 39 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.13 -1.22 7.85 -2.38 -0.02 -1.23 16 41 H 0.08 -0.70 7.95 -2.38 -0.02 -0.72 16 42 H 0.08 -0.64 7.18 -2.39 -0.02 -0.66 16 43 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.34 0.67 8.23 -92.71 -0.76 -0.09 16 45 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 46 H 0.15 -0.51 6.30 -2.91 -0.02 -0.53 16 Total: 0.00 -32.71 390.04 2.00 -30.71 By element: Atomic # 1 Polarization: -8.92 SS G_CDS: -0.48 Total: -9.40 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 5.66 Total: 16.24 kcal Atomic # 7 Polarization: -6.47 SS G_CDS: -4.76 Total: -11.22 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.44 Total: -24.26 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.01 Total: -2.07 kcal Total: -32.71 2.00 -30.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900651147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.567 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds