Wall clock time and date at job start Tue Mar 31 2020 17:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47170 * 2 1 4 4 H 1.08994 * 109.59745 * 332.09629 * 3 2 1 5 5 C 1.51334 * 109.59991 * 211.61777 * 3 2 1 6 6 O 1.21281 * 120.34963 * 128.53583 * 5 3 2 7 7 N 1.34249 * 119.29854 * 308.50607 * 5 3 2 8 8 C 1.46704 * 120.37791 * 357.16166 * 7 5 3 9 9 C 1.53037 * 109.06936 * 288.69190 * 8 7 5 10 10 C 1.52006 * 110.23013 * 88.53609 * 9 8 7 11 11 N 1.46070 * 111.79399 * 297.56027 * 10 9 8 12 12 C 1.34777 * 119.80390 * 242.93356 * 11 10 9 13 13 O 1.21590 * 119.99674 * 175.89867 * 12 11 10 14 14 C 1.47530 * 120.00241 * 355.89733 * 12 11 10 15 15 C 1.39660 * 120.20119 * 56.08520 * 14 12 11 16 16 C 1.37830 * 119.92310 * 180.25701 * 15 14 12 17 17 C 1.38574 * 120.32223 * 359.78449 * 16 15 14 18 18 C 1.38033 * 120.39848 * 359.95725 * 17 16 15 19 19 C 1.38825 * 120.07511 * 0.02562 * 18 17 16 20 20 O 1.35516 * 120.16216 * 179.97438 * 19 18 17 21 21 C 1.34815 * 117.00242 * 5.86379 * 20 19 18 22 22 H 1.07997 * 119.99453 * 354.84475 * 21 20 19 23 23 C 1.38696 * 120.00177 * 174.85056 * 21 20 19 24 24 N 1.31519 * 120.00058 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99898 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46890 * 59.99973 * 25 23 21 27 27 H 1.48504 * 109.46991 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47031 * 299.99750 * 25 23 21 29 29 H 1.08994 * 109.46972 * 59.99441 * 1 2 3 30 30 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46873 * 299.99509 * 1 2 3 32 32 H 1.09001 * 109.46873 * 240.00490 * 2 1 3 33 33 H 1.08997 * 109.47454 * 120.00392 * 2 1 3 34 34 H 0.96999 * 119.80978 * 177.13706 * 7 5 3 35 35 H 1.09003 * 109.53215 * 48.56883 * 8 7 5 36 36 H 1.09000 * 109.53753 * 168.81013 * 8 7 5 37 37 H 1.09001 * 109.35091 * 208.88588 * 9 8 7 38 38 H 1.08998 * 109.35570 * 328.59543 * 9 8 7 39 39 H 1.09000 * 108.96331 * 176.92882 * 10 9 8 40 40 H 1.08998 * 108.89749 * 58.14256 * 10 9 8 41 41 H 1.08004 * 120.03687 * 0.02562 * 15 14 12 42 42 H 1.08001 * 119.84143 * 179.76607 * 16 15 14 43 43 H 1.08001 * 119.80280 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.95956 * 179.97438 * 18 17 16 45 45 H 0.96998 * 119.99822 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3064 2.0897 -0.4805 5 6 3.3539 1.5165 -0.7474 6 8 3.5104 2.3307 -1.6325 7 7 4.3445 0.6716 -0.4199 8 6 4.1784 -0.2710 0.6919 9 6 4.2030 0.5032 2.0118 10 6 2.8016 0.9659 2.3759 11 7 2.2588 1.8869 1.3805 12 6 1.9626 3.1541 1.7314 13 8 1.5813 3.9445 0.8898 14 6 2.1011 3.5820 3.1364 15 6 3.3227 3.4378 3.7976 16 6 3.4442 3.8346 5.1120 17 6 2.3605 4.3809 5.7808 18 6 1.1484 4.5345 5.1386 19 6 1.0077 4.1407 3.8148 20 8 -0.1817 4.2902 3.1827 21 6 -1.1545 4.9384 3.8542 22 1 -0.9954 5.2380 4.8795 23 6 -2.3596 5.2205 3.2283 24 7 -2.5532 4.8561 1.9795 25 14 -3.7078 6.1181 4.1590 26 1 -3.2089 7.4478 4.5927 27 1 -4.8862 6.2969 3.2731 28 1 -4.0999 5.3236 5.3507 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 5.1746 0.6843 -0.9214 35 1 3.2247 -0.7893 0.5909 36 1 4.9919 -0.9963 0.6795 37 1 4.5887 -0.1415 2.8015 38 1 4.8503 1.3739 1.9078 39 1 2.8341 1.4663 3.3438 40 1 2.1499 0.0952 2.4482 41 1 4.1703 3.0123 3.2808 42 1 4.3885 3.7189 5.6232 43 1 2.4649 4.6887 6.8108 44 1 0.3083 4.9607 5.6668 45 1 -3.3961 5.0531 1.5419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906446805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:41 Heat of formation + Delta-G solvation = -43.197417 kcal Electronic energy + Delta-G solvation = -30148.153541 eV Core-core repulsion = 26132.564015 eV Total energy + Delta-G solvation = -4015.589525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.00332 -39.40707 -38.07448 -36.82109 -36.44064 -34.63781 -33.48743 -32.38359 -31.10569 -30.51352 -29.03707 -27.16847 -25.89150 -25.44017 -23.33761 -23.13013 -21.66993 -20.75211 -20.31836 -19.14085 -18.11359 -17.54279 -17.14813 -16.94535 -16.20707 -15.81642 -14.90489 -14.80165 -14.66639 -14.45590 -14.11606 -14.00804 -13.91325 -13.67152 -13.56267 -13.43666 -13.10879 -12.78976 -12.61862 -12.54381 -12.09531 -11.93050 -11.75286 -11.57014 -11.50647 -11.17476 -11.13137 -11.09682 -10.87436 -10.79842 -10.50173 -10.48846 -9.93752 -9.65414 -9.10819 -9.08507 -8.90508 -8.36240 -8.23534 -7.38511 -6.49119 -4.09720 1.75689 2.22984 2.51433 3.09531 3.12579 3.14940 3.18308 3.39501 3.50768 3.90691 4.40844 4.43766 4.62275 4.68589 4.73819 4.96058 4.98864 5.11228 5.14265 5.18409 5.27922 5.33017 5.44989 5.48690 5.54892 5.65531 5.67062 5.80331 5.81622 5.92891 5.99330 6.03053 6.09738 6.15254 6.40748 6.50723 6.58087 6.78389 6.81327 6.89321 6.98656 7.17997 7.19425 7.24500 7.61803 7.73859 7.91454 8.26818 8.81088 8.92671 9.59168 10.66182 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.004502 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.404144 B = 6217.638604 C = 7507.832873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.132 3.868 4 H 0.128 0.872 5 C 0.513 3.487 6 O -0.532 6.532 7 N -0.727 5.727 8 C 0.082 3.918 9 C -0.161 4.161 10 C 0.091 3.909 11 N -0.604 5.604 12 C 0.577 3.423 13 O -0.503 6.503 14 C -0.214 4.214 15 C -0.045 4.045 16 C -0.223 4.223 17 C -0.055 4.055 18 C -0.233 4.233 19 C 0.187 3.813 20 O -0.149 6.149 21 C -0.400 4.400 22 H 0.094 0.906 23 C 0.045 3.955 24 N -0.843 5.843 25 Si 0.942 3.058 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.396 0.604 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.133 0.867 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -14.083 3.263 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.025 3.975 4 H 0.146 0.854 5 C 0.297 3.703 6 O -0.407 6.407 7 N -0.381 5.381 8 C -0.042 4.042 9 C -0.200 4.200 10 C -0.032 4.032 11 N -0.341 5.341 12 C 0.366 3.634 13 O -0.375 6.375 14 C -0.219 4.219 15 C -0.063 4.063 16 C -0.242 4.242 17 C -0.073 4.073 18 C -0.252 4.252 19 C 0.129 3.871 20 O -0.050 6.050 21 C -0.476 4.476 22 H 0.112 0.888 23 C -0.162 4.162 24 N -0.475 5.475 25 Si 0.766 3.234 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.231 0.769 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.648 -13.229 1.985 17.097 hybrid contribution -0.140 0.424 0.469 0.647 sum 10.508 -12.805 2.453 16.745 Atomic orbital electron populations 1.21815 0.93998 1.01753 1.03476 1.22253 0.97920 0.94571 1.03055 1.21491 0.94311 0.98120 0.83613 0.85426 1.21335 0.86478 0.79517 0.82949 1.90754 1.82004 1.35882 1.32013 1.46007 1.18115 1.38759 1.35242 1.22287 1.04596 0.91641 0.85648 1.22334 0.98356 1.01407 0.97927 1.21532 0.93380 0.94537 0.93793 1.47711 1.66047 1.11927 1.08399 1.18327 0.75925 0.80700 0.88427 1.90837 1.43498 1.51586 1.51608 1.18641 0.94477 1.14877 0.93906 1.20696 0.94568 0.96922 0.94158 1.20468 0.98905 1.09559 0.95276 1.20893 0.92462 0.95451 0.98504 1.21137 0.99194 1.09703 0.95149 1.19144 0.86132 0.91275 0.90507 1.83987 1.16236 1.63597 1.41145 1.21348 0.92400 1.36581 0.97244 0.88849 1.25357 0.97920 0.97041 0.95915 1.70058 1.25216 1.41765 1.10452 0.85776 0.79218 0.79621 0.78791 1.19339 1.20151 1.19388 0.92176 0.92408 0.91525 0.90733 0.89065 0.76873 0.88317 0.89758 0.89253 0.90765 0.87592 0.91131 0.86806 0.87124 0.87089 0.84989 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.73 37.16 0.36 -1.60 16 2 C -0.14 -1.63 3.93 -26.73 -0.11 -1.73 16 3 C 0.13 2.14 2.42 -68.68 -0.17 1.97 16 4 H 0.13 2.58 6.89 -51.93 -0.36 2.22 16 5 C 0.51 8.28 6.85 -10.91 -0.07 8.21 16 6 O -0.53 -11.12 17.95 5.56 0.10 -11.02 16 7 N -0.73 -8.00 5.29 -60.03 -0.32 -8.32 16 8 C 0.08 0.62 6.34 -3.91 -0.02 0.59 16 9 C -0.16 -1.38 5.75 -27.22 -0.16 -1.53 16 10 C 0.09 1.09 4.82 -4.78 -0.02 1.06 16 11 N -0.60 -10.20 2.59 -169.11 -0.44 -10.64 16 12 C 0.58 12.91 6.79 -12.47 -0.08 12.82 16 13 O -0.50 -13.92 16.32 4.05 0.07 -13.85 16 14 C -0.21 -4.57 4.82 -104.81 -0.51 -5.08 16 15 C -0.04 -0.76 7.41 -39.20 -0.29 -1.05 16 16 C -0.22 -3.49 10.03 -39.61 -0.40 -3.89 16 17 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 18 C -0.23 -4.82 9.16 -39.44 -0.36 -5.18 16 19 C 0.19 4.51 6.65 -38.60 -0.26 4.25 16 20 O -0.15 -4.29 9.01 -0.43 0.00 -4.30 16 21 C -0.40 -11.09 9.49 30.90 0.29 -10.79 16 22 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 23 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 24 N -0.84 -25.00 13.67 55.48 0.76 -24.24 16 25 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 29 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 33 H 0.09 0.85 3.44 -51.93 -0.18 0.67 16 34 H 0.40 3.79 8.93 -40.82 -0.36 3.43 16 35 H 0.10 0.70 3.65 -51.93 -0.19 0.52 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.76 7.50 -51.93 -0.39 0.37 16 39 H 0.11 1.38 4.49 -51.93 -0.23 1.15 16 40 H 0.07 0.72 6.35 -51.93 -0.33 0.39 16 41 H 0.11 1.62 6.81 -52.48 -0.36 1.27 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -37.20 357.12 -7.22 -44.42 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.46 Total: 9.40 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.28 Total: -2.13 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.00 Total: -43.20 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: 0.16 Total: -29.17 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.20 -7.22 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906446805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.227 kcal (2) G-P(sol) polarization free energy of solvation -37.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds