Wall clock time and date at job start Tue Mar 31 2020 17:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47170 * 2 1 4 4 H 1.08994 * 109.59745 * 332.09629 * 3 2 1 5 5 C 1.51334 * 109.59991 * 211.61777 * 3 2 1 6 6 O 1.21281 * 120.34963 * 128.53583 * 5 3 2 7 7 N 1.34249 * 119.29854 * 308.50607 * 5 3 2 8 8 C 1.46704 * 120.37791 * 357.16166 * 7 5 3 9 9 C 1.53037 * 109.06936 * 288.69190 * 8 7 5 10 10 C 1.52006 * 110.23013 * 88.53609 * 9 8 7 11 11 N 1.46070 * 111.79399 * 297.56027 * 10 9 8 12 12 C 1.34777 * 119.80390 * 242.93356 * 11 10 9 13 13 O 1.21590 * 119.99674 * 175.89867 * 12 11 10 14 14 C 1.47530 * 120.00241 * 355.89733 * 12 11 10 15 15 C 1.39660 * 120.20119 * 56.08520 * 14 12 11 16 16 C 1.37830 * 119.92310 * 180.25701 * 15 14 12 17 17 C 1.38574 * 120.32223 * 359.78449 * 16 15 14 18 18 C 1.38033 * 120.39848 * 359.95725 * 17 16 15 19 19 C 1.38825 * 120.07511 * 0.02562 * 18 17 16 20 20 O 1.35516 * 120.16216 * 179.97438 * 19 18 17 21 21 C 1.34815 * 117.00242 * 5.86379 * 20 19 18 22 22 H 1.07997 * 119.99453 * 354.84475 * 21 20 19 23 23 C 1.38696 * 120.00177 * 174.85056 * 21 20 19 24 24 N 1.31519 * 120.00058 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99898 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46890 * 59.99973 * 25 23 21 27 27 H 1.48504 * 109.46991 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47031 * 299.99750 * 25 23 21 29 29 H 1.08994 * 109.46972 * 59.99441 * 1 2 3 30 30 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46873 * 299.99509 * 1 2 3 32 32 H 1.09001 * 109.46873 * 240.00490 * 2 1 3 33 33 H 1.08997 * 109.47454 * 120.00392 * 2 1 3 34 34 H 0.96999 * 119.80978 * 177.13706 * 7 5 3 35 35 H 1.09003 * 109.53215 * 48.56883 * 8 7 5 36 36 H 1.09000 * 109.53753 * 168.81013 * 8 7 5 37 37 H 1.09001 * 109.35091 * 208.88588 * 9 8 7 38 38 H 1.08998 * 109.35570 * 328.59543 * 9 8 7 39 39 H 1.09000 * 108.96331 * 176.92882 * 10 9 8 40 40 H 1.08998 * 108.89749 * 58.14256 * 10 9 8 41 41 H 1.08004 * 120.03687 * 0.02562 * 15 14 12 42 42 H 1.08001 * 119.84143 * 179.76607 * 16 15 14 43 43 H 1.08001 * 119.80280 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.95956 * 179.97438 * 18 17 16 45 45 H 0.96998 * 119.99822 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3064 2.0897 -0.4805 5 6 3.3539 1.5165 -0.7474 6 8 3.5104 2.3307 -1.6325 7 7 4.3445 0.6716 -0.4199 8 6 4.1784 -0.2710 0.6919 9 6 4.2030 0.5032 2.0118 10 6 2.8016 0.9659 2.3759 11 7 2.2588 1.8869 1.3805 12 6 1.9626 3.1541 1.7314 13 8 1.5813 3.9445 0.8898 14 6 2.1011 3.5820 3.1364 15 6 3.3227 3.4378 3.7976 16 6 3.4442 3.8346 5.1120 17 6 2.3605 4.3809 5.7808 18 6 1.1484 4.5345 5.1386 19 6 1.0077 4.1407 3.8148 20 8 -0.1817 4.2902 3.1827 21 6 -1.1545 4.9384 3.8542 22 1 -0.9954 5.2380 4.8795 23 6 -2.3596 5.2205 3.2283 24 7 -2.5532 4.8561 1.9795 25 14 -3.7078 6.1181 4.1590 26 1 -3.2089 7.4478 4.5927 27 1 -4.8862 6.2969 3.2731 28 1 -4.0999 5.3236 5.3507 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 5.1746 0.6843 -0.9214 35 1 3.2247 -0.7893 0.5909 36 1 4.9919 -0.9963 0.6795 37 1 4.5887 -0.1415 2.8015 38 1 4.8503 1.3739 1.9078 39 1 2.8341 1.4663 3.3438 40 1 2.1499 0.0952 2.4482 41 1 4.1703 3.0123 3.2808 42 1 4.3885 3.7189 5.6232 43 1 2.4649 4.6887 6.8108 44 1 0.3083 4.9607 5.6668 45 1 -3.3961 5.0531 1.5419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906446805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:40 Heat of formation + Delta-G solvation = -73.175792 kcal Electronic energy + Delta-G solvation = -30149.453500 eV Core-core repulsion = 26132.564015 eV Total energy + Delta-G solvation = -4016.889485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30872 -40.98247 -39.70797 -38.21729 -38.08608 -35.80435 -34.69066 -34.35534 -32.22646 -31.98812 -30.64796 -28.43909 -27.39144 -26.90637 -24.62770 -24.34294 -23.30806 -21.99025 -21.43259 -20.44958 -19.93331 -19.03199 -18.46412 -18.22713 -17.73262 -17.14379 -16.53215 -16.38619 -16.04568 -15.83509 -15.52288 -15.50919 -15.28152 -15.01084 -14.93860 -14.60716 -14.44766 -14.25504 -14.07191 -13.71602 -13.58095 -13.25127 -13.16918 -12.92974 -12.73980 -12.59171 -12.47996 -12.37266 -12.24783 -12.17450 -12.05880 -11.55732 -11.47476 -11.11312 -10.84595 -10.79941 -10.10655 -9.82374 -9.66477 -9.07794 -8.48382 -6.19308 0.21357 0.67708 1.20361 1.31313 1.44088 1.49310 1.65094 2.13270 2.15089 2.27694 2.79051 3.09995 3.28239 3.40620 3.59655 3.77439 3.83079 3.88506 4.00966 4.08634 4.20393 4.25852 4.42631 4.47555 4.48509 4.54738 4.61084 4.61879 4.75930 4.83292 4.89672 4.91920 4.96504 5.03188 5.06224 5.11079 5.27040 5.34851 5.48113 5.51569 5.56654 5.68265 5.87742 5.93621 6.08944 6.13633 6.30869 6.92858 7.11333 7.17776 7.73885 8.73276 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.004502 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.404144 B = 6217.638604 C = 7507.832873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.126 3.874 4 H 0.068 0.932 5 C 0.511 3.489 6 O -0.595 6.595 7 N -0.703 5.703 8 C 0.074 3.926 9 C -0.152 4.152 10 C 0.075 3.925 11 N -0.591 5.591 12 C 0.564 3.436 13 O -0.581 6.581 14 C -0.228 4.228 15 C -0.037 4.037 16 C -0.187 4.187 17 C -0.044 4.044 18 C -0.247 4.247 19 C 0.146 3.854 20 O -0.215 6.215 21 C -0.420 4.420 22 H 0.109 0.891 23 C -0.023 4.023 24 N -0.915 5.915 25 Si 1.022 2.978 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.248 1.248 29 H 0.038 0.962 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.408 0.592 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.126 0.874 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.467 -17.387 7.223 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.018 3.982 4 H 0.086 0.914 5 C 0.296 3.704 6 O -0.474 6.474 7 N -0.355 5.355 8 C -0.047 4.047 9 C -0.191 4.191 10 C -0.046 4.046 11 N -0.326 5.326 12 C 0.354 3.646 13 O -0.460 6.460 14 C -0.232 4.232 15 C -0.055 4.055 16 C -0.205 4.205 17 C -0.062 4.062 18 C -0.266 4.266 19 C 0.092 3.908 20 O -0.120 6.120 21 C -0.495 4.495 22 H 0.127 0.873 23 C -0.222 4.222 24 N -0.552 5.552 25 Si 0.840 3.160 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.172 1.172 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.166 0.834 42 H 0.185 0.815 43 H 0.175 0.825 44 H 0.143 0.857 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.921 -16.658 6.047 23.167 hybrid contribution -0.992 1.275 -0.597 1.722 sum 13.930 -15.383 5.450 21.457 Atomic orbital electron populations 1.21808 0.95384 1.03126 1.00670 1.22312 0.96547 0.91487 1.05992 1.21468 0.93903 0.99826 0.82968 0.91400 1.21221 0.87197 0.79764 0.82211 1.90723 1.82995 1.38851 1.34843 1.45932 1.16803 1.37320 1.35468 1.22698 1.07259 0.91277 0.83494 1.22357 0.94952 1.01866 0.99938 1.22029 0.96394 0.94084 0.92066 1.47740 1.64464 1.10814 1.09567 1.18817 0.75226 0.81990 0.88554 1.90790 1.47280 1.54337 1.53612 1.18988 0.95681 1.15001 0.93528 1.21116 0.93332 0.96105 0.94973 1.21156 1.00338 1.04850 0.94160 1.21423 0.90738 0.93607 1.00391 1.21296 1.01135 1.10170 0.93973 1.19870 0.85977 0.92585 0.92318 1.83985 1.18163 1.66690 1.43119 1.21908 0.92903 1.36731 0.98001 0.87346 1.26744 1.00684 0.97919 0.96828 1.70262 1.26132 1.45611 1.13155 0.84620 0.75274 0.78462 0.77628 1.18206 1.20017 1.17182 0.94297 0.88674 0.95260 0.87960 0.85516 0.75518 0.87500 0.84649 0.84321 0.92032 0.88282 0.88681 0.83413 0.81550 0.82544 0.85672 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.73 71.98 0.70 -3.42 16 2 C -0.13 -2.82 3.93 30.60 0.12 -2.70 16 3 C 0.13 4.35 2.42 44.42 0.11 4.46 16 4 H 0.07 3.18 6.89 -2.39 -0.02 3.17 16 5 C 0.51 16.92 6.85 87.94 0.60 17.52 16 6 O -0.59 -26.62 17.95 -3.03 -0.05 -26.67 16 7 N -0.70 -13.51 5.29 -462.53 -2.45 -15.95 16 8 C 0.07 0.70 6.34 86.35 0.55 1.25 16 9 C -0.15 -1.75 5.75 30.28 0.17 -1.57 16 10 C 0.07 1.59 4.82 86.13 0.42 2.00 16 11 N -0.59 -20.66 2.59 -807.20 -2.09 -22.75 16 12 C 0.56 27.22 6.79 86.69 0.59 27.81 16 13 O -0.58 -36.15 16.32 -2.82 -0.05 -36.20 16 14 C -0.23 -9.98 4.82 -19.99 -0.10 -10.08 16 15 C -0.04 -1.13 7.41 22.52 0.17 -0.97 16 16 C -0.19 -4.75 10.03 22.25 0.22 -4.53 16 17 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 18 C -0.25 -10.20 9.16 22.36 0.20 -10.00 16 19 C 0.15 7.41 6.65 22.91 0.15 7.57 16 20 O -0.22 -13.58 9.01 -18.84 -0.17 -13.75 16 21 C -0.42 -25.16 9.49 67.93 0.64 -24.51 16 22 H 0.11 5.78 5.21 -2.91 -0.02 5.76 16 23 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 24 N -0.91 -59.96 13.67 21.62 0.30 -59.66 16 25 Si 1.02 44.19 29.55 68.60 2.03 46.22 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 29 H 0.04 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.78 7.69 -2.39 -0.02 1.76 16 33 H 0.13 1.90 3.44 -2.39 -0.01 1.89 16 34 H 0.41 6.55 8.93 -92.71 -0.83 5.72 16 35 H 0.11 0.89 3.65 -2.39 -0.01 0.88 16 36 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.14 0.41 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.94 7.50 -2.39 -0.02 0.92 16 39 H 0.10 2.27 4.49 -2.39 -0.01 2.26 16 40 H 0.10 1.58 6.35 -2.39 -0.02 1.56 16 41 H 0.15 3.53 6.81 -2.91 -0.02 3.51 16 42 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 44 H 0.13 5.24 5.64 -2.91 -0.02 5.22 16 45 H 0.27 16.37 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -102.06 357.12 2.99 -99.08 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.23 Total: 28.86 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.24 Total: 0.84 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -4.24 Total: -98.37 kcal Atomic # 8 Polarization: -76.35 SS G_CDS: -0.27 Total: -76.62 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -102.06 2.99 -99.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906446805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.901 kcal (2) G-P(sol) polarization free energy of solvation -102.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds