Wall clock time and date at job start Tue Mar 31 2020 16:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 C 1.50703 * 109.47175 * 240.00069 * 2 1 3 5 5 H 1.08005 * 119.99634 * 240.00517 * 4 2 1 6 6 C 1.37871 * 120.00022 * 60.00076 * 4 2 1 7 7 N 1.31513 * 120.00544 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99880 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47267 * 90.00362 * 8 6 4 10 10 H 1.48503 * 109.47111 * 210.00017 * 8 6 4 11 11 H 1.48493 * 109.47461 * 330.00122 * 8 6 4 12 12 C 1.53002 * 109.47028 * 120.00140 * 2 1 3 13 13 N 1.46497 * 109.46991 * 299.99542 * 12 2 1 14 14 C 1.33796 * 124.18317 * 270.14646 * 13 12 2 15 15 O 1.21538 * 123.76823 * 0.07803 * 14 13 12 16 16 N 1.34526 * 112.45867 * 180.30692 * 14 13 12 17 17 C 1.47308 * 106.61861 * 359.74688 * 16 14 13 18 18 H 1.09007 * 110.72831 * 118.59247 * 17 16 14 19 19 C 1.53005 * 110.60223 * 241.47074 * 17 16 14 20 20 C 1.50696 * 109.47149 * 289.17980 * 19 17 16 21 21 C 1.38172 * 120.02774 * 264.71836 * 20 19 17 22 22 C 1.38241 * 120.05917 * 179.79204 * 21 20 19 23 23 C 1.38284 * 120.10793 * 0.46459 * 22 21 20 24 24 C 1.38125 * 120.05780 * 359.79108 * 23 22 21 25 25 C 1.38711 * 120.03257 * 84.99533 * 20 19 17 26 26 O 1.35907 * 120.05163 * 359.95696 * 25 20 19 27 27 C 1.34772 * 124.17263 * 89.99987 * 13 12 2 28 28 O 1.21233 * 127.16267 * 359.97438 * 27 13 12 29 29 H 1.08999 * 109.46788 * 300.00503 * 1 2 3 30 30 H 1.09000 * 109.46936 * 59.99664 * 1 2 3 31 31 H 1.08992 * 109.47343 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47112 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47201 * 299.99387 * 3 2 1 34 34 H 1.08995 * 109.46890 * 60.00199 * 3 2 1 35 35 H 0.96987 * 120.00777 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.47047 * 179.97438 * 12 2 1 37 37 H 1.08992 * 109.46996 * 59.99864 * 12 2 1 38 38 H 0.96997 * 126.69212 * 179.76945 * 16 14 13 39 39 H 1.08996 * 109.46567 * 49.17815 * 19 17 16 40 40 H 1.08993 * 109.46877 * 169.17360 * 19 17 16 41 41 H 1.08007 * 119.96705 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.94779 * 180.21213 * 22 21 20 43 43 H 1.07997 * 119.97461 * 179.76871 * 23 22 21 44 44 H 1.08002 * 120.03160 * 179.97438 * 24 23 22 45 45 H 0.96698 * 113.99992 * 89.99579 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 2.2036 0.9646 3.0575 15 8 3.2734 1.4026 2.6825 16 7 1.5449 1.4229 4.1372 17 6 0.3057 0.6332 4.2413 18 1 0.2788 0.0795 5.1799 19 6 -0.9216 1.5383 4.1169 20 6 -1.0484 2.3859 5.3564 21 6 -1.8695 1.9798 6.3907 22 6 -1.9830 2.7548 7.5299 23 6 -1.2828 3.9427 7.6333 24 6 -0.4647 4.3558 6.5999 25 6 -0.3453 3.5774 5.4575 26 8 0.4593 3.9814 4.4395 27 6 0.3889 -0.3175 3.0635 28 8 -0.4198 -1.1631 2.7465 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7096 1.1618 -3.4844 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7489 1.2492 38 1 1.8300 2.1347 4.7312 39 1 -0.8103 2.1834 3.2454 40 1 -1.8153 0.9249 4.0031 41 1 -2.4203 1.0542 6.3107 42 1 -2.6227 2.4339 8.3387 43 1 -1.3759 4.5483 8.5226 44 1 0.0817 5.2839 6.6809 45 1 0.0134 4.5298 3.7796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924928142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:17 Heat of formation + Delta-G solvation = -61.164416 kcal Electronic energy + Delta-G solvation = -29813.165967 eV Core-core repulsion = 25796.797334 eV Total energy + Delta-G solvation = -4016.368633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07679 -40.09678 -38.08189 -36.84486 -36.46675 -35.68756 -33.98226 -32.51429 -30.85062 -30.20343 -28.69003 -26.29725 -25.60074 -25.15258 -24.50799 -22.89946 -22.22646 -21.23002 -20.51711 -18.60947 -18.51898 -17.39448 -16.95206 -16.36693 -16.18530 -15.92009 -15.65031 -15.42529 -15.00938 -14.74937 -14.55128 -14.17143 -13.96923 -13.70523 -13.53823 -13.13641 -12.85767 -12.59947 -12.36649 -12.26488 -12.22055 -12.07516 -11.53632 -11.18608 -11.11824 -10.75686 -10.67186 -10.64442 -10.38402 -10.24921 -10.14030 -10.00452 -9.69218 -9.40059 -9.31434 -9.06939 -8.81083 -8.72615 -8.58809 -8.29374 -5.93670 -4.04653 0.91346 0.99857 2.05662 2.77796 3.28172 3.32833 3.39460 3.42876 3.51966 3.59859 4.00193 4.19071 4.45436 4.53768 4.62181 4.72701 4.79489 4.88136 5.04814 5.18629 5.32500 5.41919 5.51669 5.61067 5.69536 5.83911 6.04795 6.15999 6.17683 6.21724 6.27951 6.35130 6.51398 6.51432 6.90157 7.02996 7.14145 7.17125 7.22889 7.45193 7.53189 7.63796 7.72670 7.77192 7.84991 8.15617 8.22172 8.46602 8.66884 8.94971 9.60182 11.07345 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.003198 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.180518 B = 8752.210210 C = 8907.032778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.055 3.945 3 C -0.120 4.120 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.561 5.561 14 C 0.701 3.299 15 O -0.538 6.538 16 N -0.720 5.720 17 C 0.100 3.900 18 H 0.118 0.882 19 C -0.075 4.075 20 C -0.109 4.109 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.107 4.107 24 C -0.145 4.145 25 C 0.111 3.889 26 O -0.492 6.492 27 C 0.524 3.476 28 O -0.469 6.469 29 H -0.001 1.001 30 H 0.081 0.919 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.002 0.998 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.437 0.563 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 6.085 20.569 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.054 3.946 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.306 5.306 14 C 0.402 3.598 15 O -0.411 6.411 16 N -0.386 5.386 17 C -0.010 4.010 18 H 0.135 0.865 19 C -0.113 4.113 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.147 4.147 23 C -0.125 4.125 24 C -0.163 4.163 25 C 0.067 3.933 26 O -0.303 6.303 27 C 0.310 3.690 28 O -0.339 6.339 29 H 0.018 0.982 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.021 0.979 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.383 5.580 20.219 21.924 hybrid contribution 0.017 0.254 -0.786 0.826 sum -6.366 5.834 19.432 21.265 Atomic orbital electron populations 1.21766 0.97501 0.99158 0.99535 1.18461 0.92945 0.93175 0.90007 1.21728 0.98786 0.97733 0.99481 1.20941 1.31568 1.12044 0.89925 0.92503 1.24865 0.94879 0.94885 0.98781 1.69826 1.36658 1.22659 1.23073 0.86579 0.79241 0.79359 0.82701 1.20760 1.21302 1.19921 1.22225 0.99622 0.95536 0.81832 1.46533 1.21088 1.34107 1.28857 1.15900 0.83923 0.79853 0.80097 1.90985 1.20583 1.61585 1.67941 1.45562 1.21591 1.40519 1.30925 1.21954 0.86973 0.92497 0.99567 0.86486 1.20652 0.97074 0.97357 0.96250 1.20124 0.97638 0.96318 0.96847 1.21052 0.97907 0.99888 0.92746 1.21167 1.00280 0.95136 0.98076 1.21056 0.96401 0.96624 0.98449 1.21460 1.00011 1.00458 0.94380 1.18385 0.92330 0.93129 0.89482 1.84819 1.37194 1.72282 1.35958 1.20588 0.81347 0.83519 0.83592 1.90776 1.42326 1.32667 1.68157 0.98202 0.89982 0.95239 0.95114 0.90258 0.97864 0.93093 0.89992 0.90234 0.71832 0.89270 0.88471 0.85263 0.85762 0.85772 0.85377 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 7.26 37.16 0.27 -2.73 16 2 C 0.06 1.36 0.57 -155.66 -0.09 1.27 16 3 C -0.12 -3.02 7.12 37.16 0.26 -2.76 16 4 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -24.56 9.35 55.43 0.52 -24.05 16 8 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.76 4.67 -4.04 -0.02 2.74 16 13 N -0.56 -10.66 2.13 -120.73 -0.26 -10.92 16 14 C 0.70 12.95 7.05 -88.02 -0.62 12.33 16 15 O -0.54 -11.79 16.29 5.33 0.09 -11.70 16 16 N -0.72 -10.01 5.36 -59.19 -0.32 -10.33 16 17 C 0.10 1.25 3.63 -68.20 -0.25 1.00 16 18 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.07 -0.81 4.84 -27.88 -0.13 -0.95 16 20 C -0.11 -1.01 5.09 -104.47 -0.53 -1.54 16 21 C -0.10 -0.78 9.68 -39.60 -0.38 -1.16 16 22 C -0.13 -0.91 10.04 -39.56 -0.40 -1.30 16 23 C -0.11 -0.76 10.04 -39.61 -0.40 -1.16 16 24 C -0.14 -1.17 9.99 -39.43 -0.39 -1.56 16 25 C 0.11 1.03 6.15 -39.22 -0.24 0.78 16 26 O -0.49 -4.72 10.70 -19.45 -0.21 -4.93 16 27 C 0.52 8.88 5.99 -10.55 -0.06 8.82 16 28 O -0.47 -8.97 16.87 5.60 0.09 -8.87 16 29 H 0.00 -0.02 6.19 -51.93 -0.32 -0.35 16 30 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 34 H 0.00 0.06 6.16 -51.93 -0.32 -0.26 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.08 1.80 7.87 -51.93 -0.41 1.39 16 37 H 0.08 1.69 8.00 -51.93 -0.42 1.27 16 38 H 0.44 5.56 7.25 -40.82 -0.30 5.26 16 39 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 40 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 41 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.39 2.60 9.06 45.56 0.41 3.01 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -32.26 361.92 -8.30 -40.56 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.30 Total: 7.01 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.35 Total: 1.57 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.06 Total: -45.29 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.03 Total: -25.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.26 -8.30 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924928142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.603 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds