Wall clock time and date at job start Tue Mar 31 2020 16:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 C 1.50703 * 109.47175 * 240.00069 * 2 1 3 5 5 H 1.08005 * 119.99634 * 240.00517 * 4 2 1 6 6 C 1.37871 * 120.00022 * 60.00076 * 4 2 1 7 7 N 1.31513 * 120.00544 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99880 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47267 * 90.00362 * 8 6 4 10 10 H 1.48503 * 109.47111 * 210.00017 * 8 6 4 11 11 H 1.48493 * 109.47461 * 330.00122 * 8 6 4 12 12 C 1.53002 * 109.47028 * 120.00140 * 2 1 3 13 13 N 1.46497 * 109.46991 * 299.99542 * 12 2 1 14 14 C 1.33796 * 124.18317 * 270.14646 * 13 12 2 15 15 O 1.21538 * 123.76823 * 0.07803 * 14 13 12 16 16 N 1.34526 * 112.45867 * 180.30692 * 14 13 12 17 17 C 1.47308 * 106.61861 * 359.74688 * 16 14 13 18 18 H 1.09007 * 110.72831 * 118.59247 * 17 16 14 19 19 C 1.53005 * 110.60223 * 241.47074 * 17 16 14 20 20 C 1.50696 * 109.47149 * 289.17980 * 19 17 16 21 21 C 1.38172 * 120.02774 * 264.71836 * 20 19 17 22 22 C 1.38241 * 120.05917 * 179.79204 * 21 20 19 23 23 C 1.38284 * 120.10793 * 0.46459 * 22 21 20 24 24 C 1.38125 * 120.05780 * 359.79108 * 23 22 21 25 25 C 1.38711 * 120.03257 * 84.99533 * 20 19 17 26 26 O 1.35907 * 120.05163 * 359.95696 * 25 20 19 27 27 C 1.34772 * 124.17263 * 89.99987 * 13 12 2 28 28 O 1.21233 * 127.16267 * 359.97438 * 27 13 12 29 29 H 1.08999 * 109.46788 * 300.00503 * 1 2 3 30 30 H 1.09000 * 109.46936 * 59.99664 * 1 2 3 31 31 H 1.08992 * 109.47343 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47112 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47201 * 299.99387 * 3 2 1 34 34 H 1.08995 * 109.46890 * 60.00199 * 3 2 1 35 35 H 0.96987 * 120.00777 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.47047 * 179.97438 * 12 2 1 37 37 H 1.08992 * 109.46996 * 59.99864 * 12 2 1 38 38 H 0.96997 * 126.69212 * 179.76945 * 16 14 13 39 39 H 1.08996 * 109.46567 * 49.17815 * 19 17 16 40 40 H 1.08993 * 109.46877 * 169.17360 * 19 17 16 41 41 H 1.08007 * 119.96705 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.94779 * 180.21213 * 22 21 20 43 43 H 1.07997 * 119.97461 * 179.76871 * 23 22 21 44 44 H 1.08002 * 120.03160 * 179.97438 * 24 23 22 45 45 H 0.96698 * 113.99992 * 89.99579 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 2.2036 0.9646 3.0575 15 8 3.2734 1.4026 2.6825 16 7 1.5449 1.4229 4.1372 17 6 0.3057 0.6332 4.2413 18 1 0.2788 0.0795 5.1799 19 6 -0.9216 1.5383 4.1169 20 6 -1.0484 2.3859 5.3564 21 6 -1.8695 1.9798 6.3907 22 6 -1.9830 2.7548 7.5299 23 6 -1.2828 3.9427 7.6333 24 6 -0.4647 4.3558 6.5999 25 6 -0.3453 3.5774 5.4575 26 8 0.4593 3.9814 4.4395 27 6 0.3889 -0.3175 3.0635 28 8 -0.4198 -1.1631 2.7465 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7096 1.1618 -3.4844 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7489 1.2492 38 1 1.8300 2.1347 4.7312 39 1 -0.8103 2.1834 3.2454 40 1 -1.8153 0.9249 4.0031 41 1 -2.4203 1.0542 6.3107 42 1 -2.6227 2.4339 8.3387 43 1 -1.3759 4.5483 8.5226 44 1 0.0817 5.2839 6.6809 45 1 0.0134 4.5298 3.7796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924928142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:15 Heat of formation + Delta-G solvation = -82.486804 kcal Electronic energy + Delta-G solvation = -29814.090575 eV Core-core repulsion = 25796.797334 eV Total energy + Delta-G solvation = -4017.293241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.46325 -40.76703 -39.55117 -38.16441 -37.48073 -37.18589 -35.45714 -33.68429 -32.66392 -30.82443 -29.59672 -27.97007 -27.65984 -27.14562 -25.69945 -23.64824 -23.31896 -22.18428 -21.90549 -20.32487 -19.25072 -18.75846 -18.37643 -17.85064 -17.40391 -16.99278 -16.77278 -16.56650 -16.29049 -16.20199 -15.95373 -15.21403 -15.16358 -15.08203 -14.72998 -14.47963 -14.27232 -14.10091 -13.84182 -13.25840 -13.08160 -13.03159 -13.02482 -12.86871 -12.66030 -12.57661 -12.27524 -12.21932 -12.17538 -11.96321 -11.79908 -11.43727 -11.32401 -11.08495 -10.74958 -10.55552 -10.38513 -10.27481 -9.73614 -9.46020 -8.01531 -6.19231 0.28975 0.42088 0.71759 1.35064 1.43783 1.45735 1.54690 2.12397 2.26581 2.46247 2.75058 3.00125 3.21603 3.39163 3.72035 3.80980 3.95092 4.04208 4.16250 4.25851 4.42942 4.44123 4.55165 4.60979 4.61996 4.66506 4.78660 4.81307 4.94471 5.00774 5.04989 5.12930 5.14202 5.16381 5.46489 5.49862 5.59665 5.60691 5.63044 5.64740 5.91873 5.99846 6.04855 6.13430 6.26162 6.38093 6.49441 6.85423 6.86325 7.25194 7.48214 8.97882 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.003198 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.180518 B = 8752.210210 C = 8907.032778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.049 3.951 3 C -0.099 4.099 4 C -0.528 4.528 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.271 1.271 12 C 0.137 3.863 13 N -0.570 5.570 14 C 0.698 3.302 15 O -0.579 6.579 16 N -0.696 5.696 17 C 0.113 3.887 18 H 0.155 0.845 19 C -0.067 4.067 20 C -0.121 4.121 21 C -0.099 4.099 22 C -0.130 4.130 23 C -0.105 4.105 24 C -0.155 4.155 25 C 0.100 3.900 26 O -0.508 6.508 27 C 0.518 3.482 28 O -0.491 6.491 29 H 0.013 0.987 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.055 0.945 34 H 0.011 0.989 35 H 0.259 0.741 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.446 0.554 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 6.053 22.754 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.048 3.952 3 C -0.157 4.157 4 C -0.566 4.566 5 H 0.073 0.927 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.196 1.196 12 C 0.016 3.984 13 N -0.314 5.314 14 C 0.399 3.601 15 O -0.455 6.455 16 N -0.361 5.361 17 C 0.004 3.996 18 H 0.172 0.828 19 C -0.105 4.105 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.148 4.148 23 C -0.123 4.123 24 C -0.173 4.173 25 C 0.056 3.944 26 O -0.321 6.321 27 C 0.307 3.693 28 O -0.363 6.363 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.293 0.707 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.472 5.565 22.451 24.307 hybrid contribution 0.283 0.308 -1.387 1.448 sum -7.188 5.873 21.064 23.019 Atomic orbital electron populations 1.21526 0.97390 0.98259 0.98893 1.18462 0.92917 0.92800 0.90995 1.21485 0.97389 0.98196 0.98583 1.21270 1.31851 1.12342 0.91163 0.92670 1.25565 0.95079 0.95564 1.01375 1.69950 1.37210 1.23516 1.23567 0.85650 0.78804 0.78336 0.79374 1.20245 1.21093 1.19555 1.21822 0.99144 0.95495 0.81945 1.46506 1.22113 1.34424 1.28401 1.16013 0.83610 0.79669 0.80826 1.90958 1.22412 1.62840 1.69297 1.45428 1.21367 1.40092 1.29253 1.22138 0.86906 0.91765 0.98752 0.82757 1.20556 0.96216 0.97033 0.96726 1.19984 0.99100 0.96425 0.96635 1.21278 0.97346 1.00581 0.92497 1.21481 1.00171 0.94789 0.98343 1.21386 0.95398 0.96800 0.98742 1.21626 1.00520 1.00794 0.94357 1.18542 0.92595 0.93526 0.89742 1.84773 1.38080 1.72669 1.36552 1.21286 0.80125 0.83646 0.84283 1.90765 1.42700 1.33781 1.69033 0.96852 0.92412 0.96090 0.96780 0.92581 0.97040 0.93123 0.90743 0.89975 0.70739 0.90984 0.87522 0.83733 0.83443 0.83605 0.84690 0.73797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.13 7.26 71.98 0.52 -4.61 16 2 C 0.05 2.48 0.57 -52.93 -0.03 2.45 16 3 C -0.10 -5.12 7.12 71.98 0.51 -4.61 16 4 C -0.53 -28.94 8.01 25.60 0.21 -28.74 16 5 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 6 C 0.02 1.29 5.15 84.65 0.44 1.73 16 7 N -0.90 -51.03 9.35 21.44 0.20 -50.83 16 8 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 C 0.14 6.01 4.67 86.38 0.40 6.42 16 13 N -0.57 -21.52 2.13 -773.11 -1.65 -23.17 16 14 C 0.70 25.54 7.05 179.44 1.27 26.81 16 15 O -0.58 -25.66 16.29 -3.84 -0.06 -25.72 16 16 N -0.70 -18.37 5.36 -459.59 -2.46 -20.83 16 17 C 0.11 2.58 3.63 44.38 0.16 2.74 16 18 H 0.16 2.54 8.14 -2.38 -0.02 2.52 16 19 C -0.07 -1.32 4.84 29.85 0.14 -1.18 16 20 C -0.12 -1.96 5.09 -19.77 -0.10 -2.06 16 21 C -0.10 -1.25 9.68 22.25 0.22 -1.04 16 22 C -0.13 -1.37 10.04 22.28 0.22 -1.15 16 23 C -0.11 -1.16 10.04 22.25 0.22 -0.94 16 24 C -0.15 -2.16 9.99 22.36 0.22 -1.94 16 25 C 0.10 1.67 6.15 22.51 0.14 1.81 16 26 O -0.51 -9.32 10.70 -92.50 -0.99 -10.31 16 27 C 0.52 17.00 5.99 87.94 0.53 17.52 16 28 O -0.49 -18.30 16.87 -2.88 -0.05 -18.35 16 29 H 0.01 0.58 6.19 -2.39 -0.01 0.57 16 30 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 31 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.01 0.72 8.10 -2.38 -0.02 0.70 16 33 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 34 H 0.01 0.53 6.16 -2.39 -0.01 0.51 16 35 H 0.26 14.03 8.31 -92.72 -0.77 13.26 16 36 H 0.07 3.35 7.87 -2.38 -0.02 3.33 16 37 H 0.08 3.52 8.00 -2.39 -0.02 3.50 16 38 H 0.45 10.63 7.25 -92.71 -0.67 9.95 16 39 H 0.07 1.69 7.69 -2.39 -0.02 1.67 16 40 H 0.11 1.94 8.05 -2.39 -0.02 1.92 16 41 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 42 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.40 5.20 9.06 -74.06 -0.67 4.53 16 Total: -1.00 -70.07 361.92 1.79 -68.28 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.30 Total: 21.86 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 5.07 Total: 13.24 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -3.91 Total: -94.83 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -1.10 Total: -54.38 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.07 1.79 -68.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924928142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.205 kcal (2) G-P(sol) polarization free energy of solvation -70.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds