Wall clock time and date at job start Tue Mar 31 2020 17:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47089 * 2 1 4 4 C 1.53003 * 109.47194 * 240.00194 * 2 1 3 5 5 O 1.45198 * 109.47024 * 120.00117 * 2 1 3 6 6 C 1.34646 * 117.00183 * 60.00344 * 5 2 1 7 7 O 1.21512 * 119.99826 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99991 * 179.97438 * 6 5 2 9 9 C 1.46535 * 124.97983 * 179.97438 * 8 6 5 10 10 C 1.53746 * 105.19458 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.41081 * 118.78021 * 10 9 8 12 12 C 1.50708 * 110.51162 * 241.17323 * 10 9 8 13 13 O 1.21291 * 120.00012 * 356.68022 * 12 10 9 14 14 N 1.34774 * 119.99783 * 176.67600 * 12 10 9 15 15 C 1.37095 * 119.99750 * 179.97438 * 14 12 10 16 16 H 1.08000 * 120.00400 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99821 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00201 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47318 * 60.00457 * 19 17 15 21 21 H 1.48501 * 109.47056 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47705 * 300.00010 * 19 17 15 23 23 C 1.51215 * 104.58780 * 359.97438 * 10 9 8 24 24 C 1.38183 * 130.96406 * 179.97438 * 23 10 9 25 25 C 1.38232 * 120.14778 * 180.02562 * 24 23 10 26 26 C 1.38297 * 119.82328 * 0.24070 * 25 24 23 27 27 C 1.37843 * 120.22237 * 359.50495 * 26 25 24 28 28 C 1.38546 * 108.56027 * 0.02562 * 23 10 9 29 29 H 1.08999 * 109.46583 * 299.99753 * 1 2 3 30 30 H 1.08999 * 109.46953 * 59.99913 * 1 2 3 31 31 H 1.08994 * 109.47006 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47354 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47294 * 299.99878 * 3 2 1 34 34 H 1.09001 * 109.46925 * 59.99913 * 3 2 1 35 35 H 1.09007 * 109.46952 * 299.99955 * 4 2 1 36 36 H 1.09006 * 109.46983 * 59.99463 * 4 2 1 37 37 H 1.08996 * 109.47571 * 180.02562 * 4 2 1 38 38 H 1.09000 * 110.29824 * 61.04058 * 9 8 6 39 39 H 1.08992 * 110.38542 * 298.93627 * 9 8 6 40 40 H 0.97000 * 120.00367 * 0.02562 * 14 12 10 41 41 H 0.96996 * 120.00307 * 180.02562 * 18 17 15 42 42 H 1.08003 * 119.93234 * 0.02562 * 24 23 10 43 43 H 1.08002 * 120.08487 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.88346 * 179.74649 * 26 25 24 45 45 H 1.08003 * 119.85417 * 180.28016 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9510 -2.5096 0.5039 8 7 2.0681 -2.6658 2.4166 9 6 1.7406 -4.0674 2.6917 10 6 2.4418 -4.3917 4.0209 11 1 1.7098 -4.6724 4.7782 12 6 3.4495 -5.4960 3.8306 13 8 3.5639 -6.0329 2.7491 14 7 4.2237 -5.8868 4.8623 15 6 5.1401 -6.8917 4.6893 16 1 5.2420 -7.3699 3.7263 17 6 5.9380 -7.2950 5.7531 18 7 5.8138 -6.7136 6.9250 19 14 7.1871 -8.6638 5.5173 20 1 8.1610 -8.2697 4.4677 21 1 7.9054 -8.9039 6.7946 22 1 6.4877 -9.9063 5.1022 23 6 3.1362 -3.1057 4.4088 24 6 3.9190 -2.7935 5.5040 25 6 4.4509 -1.5247 5.6381 26 6 4.1938 -0.5658 4.6753 27 6 3.4179 -0.8744 3.5786 28 6 2.8763 -2.1535 3.4366 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 2.1222 -4.7079 1.8966 39 1 0.6626 -4.1925 2.7927 40 1 4.1321 -5.4576 5.7273 41 1 6.3710 -6.9949 7.6675 42 1 4.1156 -3.5424 6.2569 43 1 5.0622 -1.2817 6.4947 44 1 4.6056 0.4270 4.7812 45 1 3.2246 -0.1222 2.8280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:48 Heat of formation + Delta-G solvation = -81.746034 kcal Electronic energy + Delta-G solvation = -29290.630998 eV Core-core repulsion = 25273.369880 eV Total energy + Delta-G solvation = -4017.261119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39136 -40.07729 -37.96822 -37.35057 -35.75882 -34.29006 -34.00818 -32.38935 -31.12195 -29.58605 -28.93882 -27.59619 -27.52640 -25.70297 -23.93365 -23.02613 -21.68278 -21.38670 -19.68162 -19.18960 -18.06903 -17.94259 -16.80916 -16.71452 -16.18087 -15.83481 -15.47463 -14.97686 -14.76865 -14.52550 -14.27224 -13.97059 -13.88121 -13.62644 -13.50443 -13.28907 -12.69531 -12.58040 -12.44184 -12.30712 -12.25758 -12.06804 -12.00547 -11.81864 -11.64372 -11.48049 -11.41908 -11.25714 -11.08622 -10.64074 -10.50321 -10.46855 -10.27175 -10.16466 -10.08396 -9.58856 -8.93899 -8.33460 -8.06121 -7.64965 -6.49747 -3.90236 1.43658 1.57283 1.96355 2.85660 3.15575 3.22770 3.27137 3.66876 3.72164 3.99377 4.13982 4.53467 4.58632 4.64160 4.68474 4.72922 4.92681 5.13785 5.20835 5.25290 5.27755 5.34905 5.36322 5.49998 5.52671 5.54099 5.58662 5.64399 5.69358 5.69861 5.80427 5.95213 6.08681 6.13408 6.16058 6.21905 6.27290 6.30531 6.40722 6.55590 6.64884 6.76047 7.13348 7.48509 7.51305 7.95774 8.21252 8.49260 9.08025 9.42743 9.92393 10.67476 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.003287 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.018731 B = 8515.854625 C = 9317.084265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.131 3.869 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.353 6.353 6 C 0.666 3.334 7 O -0.552 6.552 8 N -0.531 5.531 9 C 0.136 3.864 10 C -0.071 4.071 11 H 0.112 0.888 12 C 0.448 3.552 13 O -0.588 6.588 14 N -0.548 5.548 15 C -0.303 4.303 16 H 0.104 0.896 17 C 0.027 3.973 18 N -0.897 5.897 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C -0.115 4.115 24 C -0.065 4.065 25 C -0.138 4.138 26 C -0.095 4.095 27 C -0.139 4.139 28 C 0.143 3.857 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.393 0.607 41 H 0.274 0.726 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 16.878 -5.305 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.095 3.905 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.268 6.268 6 C 0.422 3.578 7 O -0.440 6.440 8 N -0.260 5.260 9 C 0.016 3.984 10 C -0.093 4.093 11 H 0.130 0.870 12 C 0.233 3.767 13 O -0.474 6.474 14 N -0.183 5.183 15 C -0.432 4.432 16 H 0.122 0.878 17 C -0.176 4.176 18 N -0.538 5.538 19 Si 0.758 3.242 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.118 4.118 24 C -0.083 4.083 25 C -0.157 4.157 26 C -0.114 4.114 27 C -0.160 4.160 28 C 0.048 3.952 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.227 0.773 41 H 0.084 0.916 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.489 16.362 -6.301 19.066 hybrid contribution 0.593 -0.415 0.449 0.852 sum -6.896 15.947 -5.852 18.333 Atomic orbital electron populations 1.22514 0.93982 1.05087 1.02437 1.22134 0.94422 0.91644 0.82320 1.21858 1.02388 0.92387 1.03071 1.22526 1.01809 1.03536 0.96316 1.86391 1.71175 1.23156 1.46103 1.17580 0.78737 0.80559 0.80917 1.90912 1.40612 1.70427 1.42056 1.44696 1.49143 1.12922 1.19217 1.22068 1.00158 0.77805 0.98336 1.20778 0.97837 0.93460 0.97203 0.86986 1.19282 0.85353 0.86288 0.85783 1.90519 1.71790 1.59070 1.26000 1.41805 1.32449 1.32915 1.11098 1.19702 1.12995 1.11915 0.98617 0.87814 1.25267 0.98675 0.98915 0.94717 1.69582 1.40595 1.42193 1.01410 0.85906 0.80082 0.80709 0.77494 1.19824 1.20877 1.19802 1.19783 1.02033 0.93956 0.96021 1.20574 0.94612 0.96886 0.96244 1.21016 1.01491 0.93145 1.00030 1.20827 0.97657 0.99355 0.93547 1.20696 1.00889 0.94381 1.00041 1.18347 0.93944 0.94397 0.88544 0.92138 0.91123 0.89407 0.91344 0.90157 0.91417 0.89345 0.91122 0.91992 0.86888 0.89675 0.77256 0.91620 0.84878 0.85509 0.85697 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.37 37.16 0.31 -1.60 16 2 C 0.13 1.46 1.13 -90.62 -0.10 1.36 16 3 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 4 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 5 O -0.35 -5.00 7.14 -40.34 -0.29 -5.29 16 6 C 0.67 11.13 7.86 54.06 0.42 11.55 16 7 O -0.55 -9.83 12.17 -19.28 -0.23 -10.07 16 8 N -0.53 -9.21 3.13 -118.31 -0.37 -9.58 16 9 C 0.14 2.40 6.66 -3.63 -0.02 2.38 16 10 C -0.07 -1.29 3.42 -92.28 -0.32 -1.61 16 11 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 12 C 0.45 10.48 7.14 -10.98 -0.08 10.41 16 13 O -0.59 -15.81 14.85 5.55 0.08 -15.72 16 14 N -0.55 -13.51 5.11 -10.96 -0.06 -13.56 16 15 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 16 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 18 N -0.90 -23.41 13.05 55.50 0.72 -22.69 16 19 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.11 -2.00 5.50 -104.28 -0.57 -2.57 16 24 C -0.06 -1.05 9.58 -39.60 -0.38 -1.43 16 25 C -0.14 -1.91 10.06 -39.56 -0.40 -2.31 16 26 C -0.10 -1.23 10.02 -39.70 -0.40 -1.63 16 27 C -0.14 -2.04 9.47 -39.21 -0.37 -2.41 16 28 C 0.14 2.41 6.63 -83.56 -0.55 1.85 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.14 5.88 -51.93 -0.31 0.83 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.24 5.88 -51.92 -0.31 0.93 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 2.29 6.47 -51.93 -0.34 1.95 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.39 9.14 6.13 -40.82 -0.25 8.89 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 42 H 0.13 2.20 6.69 -52.48 -0.35 1.85 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.13 1.78 6.05 -52.48 -0.32 1.46 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -31.33 366.52 -7.73 -39.06 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.03 Total: 13.11 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.06 Total: 3.64 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.30 Total: -45.83 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.44 Total: -31.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.33 -7.73 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.686 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds