Wall clock time and date at job start Tue Mar 31 2020 17:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47276 * 2 1 4 4 N 1.46493 * 109.47057 * 120.00235 * 2 1 3 5 5 C 1.46501 * 120.00106 * 305.05481 * 4 2 1 6 6 C 1.50699 * 109.47346 * 270.00415 * 5 4 2 7 7 H 1.07995 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99891 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99793 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00050 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47008 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47555 * 119.99658 * 10 8 6 13 13 H 1.48497 * 109.47197 * 239.99877 * 10 8 6 14 14 C 1.34783 * 120.00153 * 125.06301 * 4 2 1 15 15 O 1.21576 * 119.99800 * 186.00097 * 14 4 2 16 16 C 1.47635 * 119.99470 * 5.99572 * 14 4 2 17 17 C 1.39964 * 119.98749 * 224.88177 * 16 14 4 18 18 C 1.37707 * 120.36936 * 179.86875 * 17 16 14 19 19 C 1.38739 * 120.11018 * 0.02562 * 18 17 16 20 20 C 1.40646 * 119.92754 * 0.22377 * 19 18 17 21 21 C 1.38953 * 120.00193 * 359.66746 * 20 19 18 22 22 C 1.47597 * 118.96192 * 179.62288 * 20 19 18 23 23 O 1.21591 * 120.60046 * 227.88178 * 22 20 19 24 24 N 1.35466 * 118.79955 * 47.89888 * 22 20 19 25 25 C 1.46402 * 119.55814 * 4.88442 * 24 22 20 26 26 C 1.52282 * 110.74467 * 285.01395 * 25 24 22 27 27 O 1.35522 * 120.86166 * 180.46144 * 19 18 17 28 28 H 1.09000 * 109.46825 * 300.00176 * 1 2 3 29 29 H 1.09004 * 109.47002 * 59.99207 * 1 2 3 30 30 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46624 * 240.00330 * 2 1 3 32 32 H 1.08997 * 109.47630 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47382 * 300.00727 * 3 2 1 34 34 H 1.09002 * 109.46941 * 59.99793 * 3 2 1 35 35 H 1.09004 * 109.47015 * 30.00597 * 5 4 2 36 36 H 1.09008 * 109.47357 * 150.00069 * 5 4 2 37 37 H 0.97001 * 119.99839 * 180.02562 * 9 8 6 38 38 H 1.08007 * 119.81564 * 359.88843 * 17 16 14 39 39 H 1.07998 * 119.94490 * 180.02562 * 18 17 16 40 40 H 1.07994 * 120.21425 * 180.17666 * 21 20 19 41 41 H 0.97000 * 120.22022 * 184.91749 * 24 22 20 42 42 H 1.08997 * 109.21633 * 45.32454 * 25 24 22 43 43 H 1.08997 * 109.21475 * 164.70575 * 25 24 22 44 44 H 1.08992 * 109.04408 * 165.70593 * 26 25 24 45 45 H 1.08999 * 109.04392 * 284.58657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5755 -0.2580 2.5238 6 6 2.5201 0.7910 3.0514 7 1 3.3660 1.1038 2.4574 8 6 2.3050 1.3506 4.2931 9 7 1.2752 0.9692 5.0167 10 14 3.4754 2.6513 4.9468 11 1 4.5447 2.9023 3.9473 12 1 2.7272 3.9091 5.1983 13 1 4.0853 2.1762 6.2147 14 6 2.8752 -1.7240 1.0750 15 8 3.1953 -2.3663 2.0564 16 6 3.4248 -2.0758 -0.2493 17 6 3.4730 -3.4150 -0.6533 18 6 3.9815 -3.7518 -1.8879 19 6 4.4508 -2.7631 -2.7407 20 6 4.4113 -1.4152 -2.3412 21 6 3.8962 -1.0742 -1.0965 22 6 4.9239 -0.3816 -3.2618 23 8 5.6882 0.4767 -2.8650 24 7 4.5271 -0.4064 -4.5568 25 6 3.5241 -1.3825 -4.9863 26 6 4.1349 -2.7736 -5.0896 27 8 4.9458 -3.0766 -3.9627 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.5711 0.1597 2.4536 36 1 1.5669 -1.1127 3.2004 37 1 1.1236 1.3632 5.8901 38 1 3.1090 -4.1885 0.0068 39 1 4.0151 -4.7873 -2.1929 40 1 3.8616 -0.0400 -0.7875 41 1 4.9053 0.2182 -5.1954 42 1 2.7090 -1.4015 -4.2629 43 1 3.1325 -1.0896 -5.9604 44 1 3.3339 -3.5096 -5.1583 45 1 4.7447 -2.8283 -5.9914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931327913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:18 Heat of formation + Delta-G solvation = -68.167129 kcal Electronic energy + Delta-G solvation = -29671.335774 eV Core-core repulsion = 25654.663481 eV Total energy + Delta-G solvation = -4016.672293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31971 -39.62344 -38.66666 -37.30655 -36.06866 -35.20706 -32.87339 -31.44633 -31.20504 -30.86117 -29.31325 -27.26318 -26.82648 -25.00389 -23.93120 -23.21805 -22.24525 -21.30458 -20.69594 -18.67845 -18.21475 -17.53490 -17.07385 -16.85382 -16.43365 -16.05746 -15.98330 -15.35559 -14.90895 -14.57440 -14.48131 -14.26830 -13.94129 -13.78857 -13.58500 -13.32039 -13.14013 -12.80861 -12.65589 -12.28851 -12.22988 -12.04720 -11.79135 -11.64362 -11.39134 -11.21790 -10.97284 -10.84323 -10.76518 -10.61037 -10.42612 -10.13630 -10.04110 -9.55116 -9.43799 -9.17719 -9.14403 -8.69619 -8.41673 -7.71148 -6.03969 -4.07445 0.57553 0.96690 2.43652 2.74122 3.07610 3.31303 3.32109 3.39749 3.44795 3.69700 3.81407 4.16833 4.31815 4.36873 4.46143 4.63137 4.80048 4.85808 4.93124 5.07796 5.18732 5.20969 5.24742 5.30399 5.32961 5.51093 5.60667 5.68233 5.83589 5.97293 6.01122 6.10881 6.21547 6.25888 6.32166 6.39604 6.50207 6.56550 6.76239 6.92599 7.07502 7.12644 7.44300 7.51920 7.90899 7.92930 8.23492 8.34423 8.85541 9.01832 9.57095 11.04118 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.003674 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.466634 B = 7619.437608 C = 8018.546802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.582 5.582 5 C 0.244 3.756 6 C -0.523 4.523 7 H 0.060 0.940 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.548 3.452 15 O -0.531 6.531 16 C -0.122 4.122 17 C -0.036 4.036 18 C -0.140 4.140 19 C 0.135 3.865 20 C -0.172 4.172 21 C -0.026 4.026 22 C 0.576 3.424 23 O -0.519 6.519 24 N -0.725 5.725 25 C 0.071 3.929 26 C 0.045 3.955 27 O -0.323 6.323 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.406 0.594 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -6.988 -24.282 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 C -0.221 4.221 4 N -0.313 5.313 5 C 0.125 3.875 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.334 3.666 15 O -0.409 6.409 16 C -0.125 4.125 17 C -0.055 4.055 18 C -0.158 4.158 19 C 0.091 3.909 20 C -0.176 4.176 21 C -0.045 4.045 22 C 0.363 3.637 23 O -0.394 6.394 24 N -0.380 5.380 25 C -0.054 4.054 26 C -0.030 4.030 27 O -0.239 6.239 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.243 0.757 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.089 0.911 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.401 -7.012 -23.254 24.292 hybrid contribution 0.633 1.077 0.053 1.251 sum 0.232 -5.935 -23.201 23.949 Atomic orbital electron populations 1.22133 0.95111 1.01929 1.02629 1.21201 0.94560 0.93955 0.88107 1.22260 1.01173 0.95902 1.02803 1.48278 1.43741 1.30221 1.09093 1.19347 0.95397 0.95950 0.76803 1.21486 1.11265 1.21262 1.02128 0.92182 1.24909 0.95496 0.97115 0.96478 1.69938 1.28367 1.43054 1.11961 0.86497 0.81045 0.81187 0.79087 1.19690 1.21009 1.20910 1.18006 0.80108 0.81249 0.87246 1.90783 1.59562 1.51890 1.38686 1.20327 1.02468 0.93878 0.95843 1.21281 0.94333 0.95307 0.94609 1.21030 1.00215 0.99655 0.94889 1.18869 0.94827 0.90882 0.86334 1.20142 1.06982 0.93285 0.97188 1.21476 0.92307 1.00694 0.90065 1.18336 0.79940 0.83549 0.81854 1.90871 1.34754 1.37266 1.76470 1.45854 1.44266 1.37780 1.10086 1.22028 0.91616 0.88904 1.02867 1.23183 0.96065 0.95700 0.88073 1.85853 1.43750 1.82657 1.11684 0.90942 0.92254 0.92787 0.90568 0.92723 0.93035 0.89547 0.94363 0.93710 0.92817 0.83972 0.84117 0.83473 0.75663 0.89969 0.87779 0.91059 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.07 37.16 0.34 -1.98 16 2 C 0.13 2.06 2.40 -67.93 -0.16 1.90 16 3 C -0.16 -2.72 8.22 37.16 0.31 -2.41 16 4 N -0.58 -12.15 2.39 -168.65 -0.40 -12.55 16 5 C 0.24 6.18 4.77 -5.19 -0.02 6.15 16 6 C -0.52 -14.43 7.85 -34.44 -0.27 -14.71 16 7 H 0.06 1.68 7.59 -52.49 -0.40 1.28 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.55 11.58 7.23 -12.42 -0.09 11.49 16 15 O -0.53 -13.42 16.53 5.30 0.09 -13.33 16 16 C -0.12 -2.01 4.94 -104.98 -0.52 -2.53 16 17 C -0.04 -0.49 9.66 -39.13 -0.38 -0.87 16 18 C -0.14 -1.55 9.98 -39.59 -0.40 -1.95 16 19 C 0.14 1.62 5.55 -38.49 -0.21 1.40 16 20 C -0.17 -2.38 4.82 -104.91 -0.51 -2.88 16 21 C -0.03 -0.41 7.12 -38.88 -0.28 -0.69 16 22 C 0.58 7.95 7.25 -12.13 -0.09 7.87 16 23 O -0.52 -9.27 17.92 5.29 0.09 -9.17 16 24 N -0.73 -6.43 5.44 -61.59 -0.33 -6.77 16 25 C 0.07 0.39 6.29 -4.46 -0.03 0.37 16 26 C 0.05 0.26 6.97 36.79 0.26 0.52 16 27 O -0.32 -3.37 9.89 -18.26 -0.18 -3.55 16 28 H 0.07 1.20 6.52 -51.93 -0.34 0.86 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.09 4.80 -51.93 -0.25 0.84 16 32 H 0.05 0.96 6.52 -51.93 -0.34 0.62 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.66 6.93 -51.93 -0.36 1.31 16 35 H 0.04 0.97 6.17 -51.93 -0.32 0.65 16 36 H 0.04 1.30 7.35 -51.92 -0.38 0.91 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.15 2.47 5.10 -52.49 -0.27 2.20 16 41 H 0.41 2.87 8.95 -40.82 -0.37 2.50 16 42 H 0.08 0.51 7.45 -51.93 -0.39 0.12 16 43 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -35.84 364.51 -7.60 -43.45 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.92 Total: 1.60 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.15 Total: 3.34 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.00 Total: -44.75 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.00 Total: -26.05 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.84 -7.60 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931327913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.722 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds