Wall clock time and date at job start Tue Mar 31 2020 17:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47276 * 2 1 4 4 N 1.46493 * 109.47057 * 120.00235 * 2 1 3 5 5 C 1.46501 * 120.00106 * 305.05481 * 4 2 1 6 6 C 1.50699 * 109.47346 * 270.00415 * 5 4 2 7 7 H 1.07995 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99891 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99793 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00050 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47008 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47555 * 119.99658 * 10 8 6 13 13 H 1.48497 * 109.47197 * 239.99877 * 10 8 6 14 14 C 1.34783 * 120.00153 * 125.06301 * 4 2 1 15 15 O 1.21576 * 119.99800 * 186.00097 * 14 4 2 16 16 C 1.47635 * 119.99470 * 5.99572 * 14 4 2 17 17 C 1.39964 * 119.98749 * 224.88177 * 16 14 4 18 18 C 1.37707 * 120.36936 * 179.86875 * 17 16 14 19 19 C 1.38739 * 120.11018 * 0.02562 * 18 17 16 20 20 C 1.40646 * 119.92754 * 0.22377 * 19 18 17 21 21 C 1.38953 * 120.00193 * 359.66746 * 20 19 18 22 22 C 1.47597 * 118.96192 * 179.62288 * 20 19 18 23 23 O 1.21591 * 120.60046 * 227.88178 * 22 20 19 24 24 N 1.35466 * 118.79955 * 47.89888 * 22 20 19 25 25 C 1.46402 * 119.55814 * 4.88442 * 24 22 20 26 26 C 1.52282 * 110.74467 * 285.01395 * 25 24 22 27 27 O 1.35522 * 120.86166 * 180.46144 * 19 18 17 28 28 H 1.09000 * 109.46825 * 300.00176 * 1 2 3 29 29 H 1.09004 * 109.47002 * 59.99207 * 1 2 3 30 30 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46624 * 240.00330 * 2 1 3 32 32 H 1.08997 * 109.47630 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47382 * 300.00727 * 3 2 1 34 34 H 1.09002 * 109.46941 * 59.99793 * 3 2 1 35 35 H 1.09004 * 109.47015 * 30.00597 * 5 4 2 36 36 H 1.09008 * 109.47357 * 150.00069 * 5 4 2 37 37 H 0.97001 * 119.99839 * 180.02562 * 9 8 6 38 38 H 1.08007 * 119.81564 * 359.88843 * 17 16 14 39 39 H 1.07998 * 119.94490 * 180.02562 * 18 17 16 40 40 H 1.07994 * 120.21425 * 180.17666 * 21 20 19 41 41 H 0.97000 * 120.22022 * 184.91749 * 24 22 20 42 42 H 1.08997 * 109.21633 * 45.32454 * 25 24 22 43 43 H 1.08997 * 109.21475 * 164.70575 * 25 24 22 44 44 H 1.08992 * 109.04408 * 165.70593 * 26 25 24 45 45 H 1.08999 * 109.04392 * 284.58657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5755 -0.2580 2.5238 6 6 2.5201 0.7910 3.0514 7 1 3.3660 1.1038 2.4574 8 6 2.3050 1.3506 4.2931 9 7 1.2752 0.9692 5.0167 10 14 3.4754 2.6513 4.9468 11 1 4.5447 2.9023 3.9473 12 1 2.7272 3.9091 5.1983 13 1 4.0853 2.1762 6.2147 14 6 2.8752 -1.7240 1.0750 15 8 3.1953 -2.3663 2.0564 16 6 3.4248 -2.0758 -0.2493 17 6 3.4730 -3.4150 -0.6533 18 6 3.9815 -3.7518 -1.8879 19 6 4.4508 -2.7631 -2.7407 20 6 4.4113 -1.4152 -2.3412 21 6 3.8962 -1.0742 -1.0965 22 6 4.9239 -0.3816 -3.2618 23 8 5.6882 0.4767 -2.8650 24 7 4.5271 -0.4064 -4.5568 25 6 3.5241 -1.3825 -4.9863 26 6 4.1349 -2.7736 -5.0896 27 8 4.9458 -3.0766 -3.9627 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.5711 0.1597 2.4536 36 1 1.5669 -1.1127 3.2004 37 1 1.1236 1.3632 5.8901 38 1 3.1090 -4.1885 0.0068 39 1 4.0151 -4.7873 -2.1929 40 1 3.8616 -0.0400 -0.7875 41 1 4.9053 0.2182 -5.1954 42 1 2.7090 -1.4015 -4.2629 43 1 3.1325 -1.0896 -5.9604 44 1 3.3339 -3.5096 -5.1583 45 1 4.7447 -2.8283 -5.9914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931327913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:17 Heat of formation + Delta-G solvation = -94.730251 kcal Electronic energy + Delta-G solvation = -29672.487637 eV Core-core repulsion = 25654.663481 eV Total energy + Delta-G solvation = -4017.824157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28455 -41.06132 -39.64979 -38.41443 -37.70216 -36.03587 -34.96651 -32.56640 -32.44454 -32.23991 -30.17454 -29.07884 -28.11864 -26.02416 -25.31296 -24.58624 -23.39758 -22.52901 -21.79844 -20.03587 -19.00268 -18.75720 -18.63199 -18.12959 -17.72172 -17.24748 -16.98269 -16.72049 -16.34672 -15.97740 -15.75182 -15.27224 -15.22280 -15.11650 -14.78659 -14.52223 -14.27769 -14.11252 -13.89309 -13.79740 -13.38836 -13.32514 -13.04569 -12.99010 -12.88015 -12.79900 -12.54428 -12.34703 -12.26258 -12.15144 -11.77240 -11.58203 -11.53015 -11.14100 -10.80504 -10.62388 -10.27640 -10.14534 -9.81556 -9.48202 -8.22122 -6.33535 -0.47193 -0.11241 1.33505 1.36141 1.39757 1.47689 1.65231 2.10348 2.21223 2.30571 2.41670 2.59635 3.07821 3.31225 3.45747 3.63432 3.86991 3.89793 3.97334 3.98691 4.17252 4.21403 4.27743 4.33326 4.53373 4.63582 4.67106 4.72762 4.80081 4.81750 4.83321 4.94120 4.96628 5.02613 5.07763 5.14630 5.25615 5.36742 5.39627 5.49747 5.60096 5.79601 5.83151 5.92602 6.08096 6.33957 6.65488 6.75064 7.01774 7.22082 7.39010 8.85398 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.003674 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.466634 B = 7619.437608 C = 8018.546802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 C -0.157 4.157 4 N -0.586 5.586 5 C 0.261 3.739 6 C -0.531 4.531 7 H 0.050 0.950 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.957 3.043 11 H -0.273 1.273 12 H -0.268 1.268 13 H -0.282 1.282 14 C 0.541 3.459 15 O -0.588 6.588 16 C -0.144 4.144 17 C -0.030 4.030 18 C -0.123 4.123 19 C 0.158 3.842 20 C -0.180 4.180 21 C -0.032 4.032 22 C 0.570 3.430 23 O -0.574 6.574 24 N -0.707 5.707 25 C 0.063 3.937 26 C 0.036 3.964 27 O -0.336 6.336 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.035 0.965 36 H -0.001 1.001 37 H 0.266 0.734 38 H 0.148 0.852 39 H 0.180 0.820 40 H 0.128 0.872 41 H 0.417 0.583 42 H 0.079 0.921 43 H 0.149 0.851 44 H 0.101 0.899 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 -7.779 -28.550 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 C -0.215 4.215 4 N -0.316 5.316 5 C 0.141 3.859 6 C -0.570 4.570 7 H 0.068 0.932 8 C -0.186 4.186 9 N -0.565 5.565 10 Si 0.782 3.218 11 H -0.198 1.198 12 H -0.193 1.193 13 H -0.208 1.208 14 C 0.330 3.670 15 O -0.470 6.470 16 C -0.147 4.147 17 C -0.049 4.049 18 C -0.141 4.141 19 C 0.113 3.887 20 C -0.184 4.184 21 C -0.051 4.051 22 C 0.357 3.643 23 O -0.454 6.454 24 N -0.360 5.360 25 C -0.060 4.060 26 C -0.038 4.038 27 O -0.253 6.253 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.075 0.925 38 H 0.166 0.834 39 H 0.197 0.803 40 H 0.146 0.854 41 H 0.255 0.745 42 H 0.098 0.902 43 H 0.167 0.833 44 H 0.119 0.881 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.547 -7.803 -27.625 28.711 hybrid contribution 0.662 1.233 1.155 1.815 sum 0.115 -6.570 -26.470 27.273 Atomic orbital electron populations 1.22096 0.93342 1.02514 1.03192 1.21537 0.95917 0.93545 0.87083 1.22183 1.00071 0.96170 1.03046 1.48280 1.43758 1.30639 1.08875 1.18786 0.95036 0.93482 0.78621 1.21672 1.11206 1.21696 1.02435 0.93205 1.25708 0.97043 0.99161 0.96727 1.70038 1.29798 1.44246 1.12395 0.85521 0.79019 0.79127 0.78107 1.19765 1.19307 1.20759 1.18769 0.79197 0.80332 0.88693 1.90729 1.61423 1.53774 1.41074 1.19874 1.05298 0.95662 0.93881 1.21394 0.94006 0.93851 0.95630 1.21298 0.98360 1.01259 0.93152 1.18933 0.92457 0.89944 0.87335 1.20177 1.07161 0.94534 0.96531 1.21211 0.93459 0.99516 0.90919 1.18474 0.79517 0.82930 0.83362 1.90843 1.37454 1.39259 1.77819 1.45822 1.43709 1.38057 1.08418 1.22413 0.90449 0.88127 1.05055 1.23605 0.97109 0.96329 0.86770 1.85829 1.44934 1.82702 1.11825 0.93617 0.88307 0.92215 0.87832 0.94431 0.89161 0.92723 0.94681 0.98252 0.92474 0.83385 0.80292 0.85432 0.74475 0.90240 0.83291 0.88129 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.07 71.98 0.65 -3.71 16 2 C 0.12 4.03 2.40 44.99 0.11 4.14 16 3 C -0.16 -5.32 8.22 71.98 0.59 -4.73 16 4 N -0.59 -25.85 2.39 -805.75 -1.92 -27.77 16 5 C 0.26 14.20 4.77 85.63 0.41 14.61 16 6 C -0.53 -30.98 7.85 25.60 0.20 -30.78 16 7 H 0.05 2.94 7.59 -2.91 -0.02 2.92 16 8 C 0.01 0.74 5.46 84.66 0.46 1.20 16 9 N -0.92 -56.16 13.29 21.45 0.28 -55.88 16 10 Si 0.96 46.35 29.54 68.60 2.03 48.38 16 11 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 14 C 0.54 24.21 7.23 86.72 0.63 24.84 16 15 O -0.59 -31.83 16.53 -3.96 -0.07 -31.89 16 16 C -0.14 -4.83 4.94 -20.10 -0.10 -4.93 16 17 C -0.03 -0.77 9.66 22.56 0.22 -0.55 16 18 C -0.12 -2.31 9.98 22.26 0.22 -2.09 16 19 C 0.16 3.28 5.55 22.98 0.13 3.41 16 20 C -0.18 -4.72 4.82 -20.05 -0.10 -4.82 16 21 C -0.03 -0.99 7.12 22.72 0.16 -0.83 16 22 C 0.57 15.04 7.25 86.60 0.63 15.67 16 23 O -0.57 -20.77 17.92 -4.00 -0.07 -20.84 16 24 N -0.71 -10.37 5.44 -466.65 -2.54 -12.90 16 25 C 0.06 0.39 6.29 86.16 0.54 0.93 16 26 C 0.04 0.22 6.97 71.74 0.50 0.72 16 27 O -0.34 -5.54 9.89 -88.25 -0.87 -6.41 16 28 H 0.04 1.54 6.52 -2.39 -0.02 1.53 16 29 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 2.91 4.80 -2.39 -0.01 2.90 16 32 H 0.04 1.38 6.52 -2.39 -0.02 1.36 16 33 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.05 2.19 6.93 -2.39 -0.02 2.17 16 35 H 0.04 1.91 6.17 -2.38 -0.01 1.89 16 36 H 0.00 -0.04 7.35 -2.38 -0.02 -0.06 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.13 4.48 5.10 -2.91 -0.01 4.46 16 41 H 0.42 4.63 8.95 -92.71 -0.83 3.80 16 42 H 0.08 0.62 7.45 -2.39 -0.02 0.60 16 43 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -85.85 364.51 2.31 -83.54 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.21 Total: 10.69 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.25 Total: 13.08 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -4.18 Total: -96.55 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -1.01 Total: -59.14 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -85.85 2.31 -83.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931327913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.189 kcal (2) G-P(sol) polarization free energy of solvation -85.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds