Wall clock time and date at job start Tue Mar 31 2020 16:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34794 * 117.00015 * 2 1 4 4 O 1.21539 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.46951 * 120.00155 * 179.97438 * 3 2 1 6 6 C 1.50704 * 119.99845 * 359.97438 * 5 3 2 7 7 C 1.33083 * 120.00482 * 179.97438 * 5 3 2 8 8 C 1.50695 * 120.00169 * 175.12435 * 7 5 3 9 9 N 1.46507 * 109.46747 * 125.36104 * 8 7 5 10 10 C 1.34774 * 119.99776 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00282 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99934 * 180.02562 * 10 9 8 13 13 C 1.39953 * 120.00022 * 175.33580 * 12 10 9 14 14 C 1.38867 * 120.06595 * 214.92392 * 13 12 10 15 15 C 1.38114 * 119.92316 * 179.77450 * 14 13 12 16 16 C 1.38286 * 120.07362 * 0.50088 * 15 14 13 17 17 C 1.50695 * 119.93399 * 179.72789 * 16 15 14 18 18 C 1.50697 * 109.47028 * 270.02526 * 17 16 15 19 19 H 1.08000 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99916 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99890 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00252 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47511 * 89.99415 * 22 20 18 24 24 H 1.48493 * 109.47187 * 210.00188 * 22 20 18 25 25 H 1.48502 * 109.46698 * 329.99943 * 22 20 18 26 26 C 1.38286 * 120.13532 * 359.75198 * 16 15 14 27 27 C 1.38114 * 120.07134 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.46628 * 60.00473 * 1 2 3 29 29 H 1.08996 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47431 * 300.00437 * 1 2 3 31 31 H 1.09000 * 109.47334 * 244.94423 * 6 5 3 32 32 H 1.09003 * 109.47192 * 4.94490 * 6 5 3 33 33 H 1.09004 * 109.46783 * 124.94448 * 6 5 3 34 34 H 1.07999 * 119.99334 * 354.85126 * 7 5 3 35 35 H 1.08999 * 109.47237 * 245.36276 * 8 7 5 36 36 H 1.08998 * 109.47142 * 5.36668 * 8 7 5 37 37 H 0.97000 * 119.99956 * 0.02562 * 9 8 7 38 38 H 0.97002 * 120.00037 * 355.33580 * 12 10 9 39 39 H 1.08001 * 120.03850 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.96590 * 180.25692 * 15 14 13 41 41 H 1.09006 * 109.46732 * 30.02347 * 17 16 15 42 42 H 1.08991 * 109.47508 * 150.02109 * 17 16 15 43 43 H 0.97000 * 120.00130 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.96245 * 180.02562 * 26 16 15 45 45 H 1.07998 * 120.03308 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5315 1.2780 0.0006 6 6 4.3523 0.0141 0.0017 7 6 4.1357 2.4637 0.0001 8 6 5.6364 2.5447 0.1116 9 7 6.1679 3.3244 -1.0092 10 6 7.4954 3.5305 -1.1171 11 8 8.2519 3.0689 -0.2847 12 7 7.9843 4.2482 -2.1478 13 6 9.3506 4.5451 -2.2080 14 6 9.7765 5.7586 -2.7317 15 6 11.1254 6.0505 -2.7854 16 6 12.0520 5.1316 -2.3278 17 6 13.5232 5.4509 -2.3935 18 6 14.0809 4.9803 -3.7121 19 1 13.4347 4.4980 -4.4305 20 6 15.4163 5.1657 -4.0013 21 7 15.9031 4.7546 -5.1518 22 14 16.5342 5.9993 -2.7585 23 1 17.1263 4.9757 -1.8604 24 1 17.6194 6.7183 -3.4730 25 1 15.7454 6.9668 -1.9541 26 6 11.6312 3.9201 -1.8106 27 6 10.2835 3.6245 -1.7490 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.9148 -0.0531 0.9330 32 1 3.6915 -0.8484 -0.0866 33 1 5.0442 0.0294 -0.8404 34 1 3.5509 3.3677 -0.0847 35 1 5.9054 3.0284 1.0506 36 1 6.0573 1.5396 0.0868 37 1 5.5642 3.6930 -1.6731 38 1 7.3892 4.5589 -2.8480 39 1 9.0535 6.4751 -3.0929 40 1 11.4571 6.9959 -3.1887 41 1 13.6658 6.5277 -2.3022 42 1 14.0415 4.9454 -1.5787 43 1 16.8425 4.8846 -5.3552 44 1 12.3572 3.2047 -1.4537 45 1 9.9556 2.6780 -1.3453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932560233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:43 Heat of formation + Delta-G solvation = -71.391132 kcal Electronic energy + Delta-G solvation = -26281.825051 eV Core-core repulsion = 22265.012954 eV Total energy + Delta-G solvation = -4016.812096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96636 -40.56054 -38.54587 -37.37446 -36.51411 -34.89969 -34.19207 -32.88697 -30.83531 -30.31372 -29.22616 -28.07554 -27.10477 -26.10115 -23.33395 -22.61031 -22.34701 -21.17389 -20.20765 -19.56294 -18.46255 -17.83596 -17.38698 -17.33865 -16.88722 -16.74288 -15.82728 -15.56776 -14.93984 -14.79057 -14.65095 -14.20477 -14.10567 -14.05695 -13.81819 -13.44016 -13.21387 -13.12626 -12.84208 -12.69933 -12.55253 -12.42791 -12.31624 -12.03206 -11.66839 -11.45775 -11.34028 -11.02279 -10.88238 -10.49169 -10.37396 -10.15807 -10.01252 -9.83949 -9.54326 -9.39650 -9.26758 -8.56071 -8.30512 -7.39039 -6.05278 -4.04082 0.39053 1.90069 2.04603 2.11399 2.26444 2.63130 3.08870 3.31049 3.38619 3.41830 4.02968 4.04238 4.22499 4.43881 4.44588 4.47239 4.58203 4.66679 4.76542 4.98052 5.13636 5.15101 5.21502 5.26718 5.40591 5.42272 5.55765 5.67735 5.74359 5.85880 5.88291 5.98227 6.00197 6.10967 6.15191 6.49361 6.61304 6.85757 6.98581 6.98925 7.07540 7.12168 7.17014 7.62288 7.64258 7.74496 7.79228 8.41263 8.52277 9.00317 9.55338 11.07687 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038881 B = 0.001583 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.969371 B =17686.126321 C =17859.687286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.502 3.498 4 O -0.508 6.508 5 C -0.139 4.139 6 C -0.122 4.122 7 C -0.079 4.079 8 C 0.159 3.841 9 N -0.745 5.745 10 C 0.703 3.297 11 O -0.570 6.570 12 N -0.680 5.680 13 C 0.123 3.877 14 C -0.143 4.143 15 C -0.106 4.106 16 C -0.039 4.039 17 C 0.014 3.986 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.069 3.931 21 N -0.901 5.901 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 C -0.106 4.106 27 C -0.115 4.115 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.398 0.602 38 H 0.402 0.598 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.264 0.736 44 H 0.122 0.878 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.632 -7.222 10.054 33.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.348 3.652 4 O -0.397 6.397 5 C -0.141 4.141 6 C -0.179 4.179 7 C -0.098 4.098 8 C 0.035 3.965 9 N -0.402 5.402 10 C 0.404 3.596 11 O -0.446 6.446 12 N -0.327 5.327 13 C 0.030 3.970 14 C -0.164 4.164 15 C -0.124 4.124 16 C -0.040 4.040 17 C -0.023 4.023 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.125 4.125 27 C -0.136 4.136 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.232 0.768 38 H 0.237 0.763 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.140 0.860 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -30.043 -7.399 10.753 32.756 hybrid contribution -0.305 0.844 -0.214 0.922 sum -30.349 -6.555 10.539 32.788 Atomic orbital electron populations 1.23317 0.75775 1.03978 1.02726 1.86576 1.23698 1.32481 1.84091 1.21335 0.89641 0.81497 0.72765 1.90877 1.67016 1.36055 1.45786 1.20804 0.89403 0.97415 1.06528 1.20892 0.99554 0.94137 1.03307 1.23746 0.96231 0.97714 0.92067 1.20359 0.88213 0.97589 0.90306 1.44983 1.05870 1.59366 1.29994 1.15863 0.82032 0.79648 0.82056 1.90958 1.56560 1.54151 1.42924 1.42422 1.08178 1.57114 1.24965 1.17311 0.80945 0.94543 1.04181 1.20715 0.96410 0.94711 1.04561 1.20830 0.91490 1.00041 1.00065 1.20301 0.97369 0.92980 0.93359 1.18802 0.88054 0.97213 0.98221 1.20954 0.94745 1.39068 1.00238 0.90803 1.24996 0.97922 0.95123 0.95206 1.69901 1.14314 1.47174 1.22556 0.86807 0.80620 0.80346 0.81762 1.20167 1.21305 1.18910 1.20990 0.94624 0.96980 0.99893 1.21142 0.92259 0.99157 1.00995 0.91720 0.87793 0.91733 0.90291 0.90301 0.90245 0.84586 0.89072 0.89493 0.76762 0.76303 0.86723 0.85949 0.95428 0.95822 0.92648 0.86027 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.57 101.05 1.07 1.23 16 2 O -0.35 -2.53 9.55 -40.75 -0.39 -2.92 16 3 C 0.50 4.19 7.88 34.26 0.27 4.46 16 4 O -0.51 -5.47 16.02 -19.30 -0.31 -5.77 16 5 C -0.14 -0.91 5.99 -102.89 -0.62 -1.53 16 6 C -0.12 -0.64 8.53 36.01 0.31 -0.33 16 7 C -0.08 -0.47 9.20 -36.10 -0.33 -0.80 16 8 C 0.16 1.12 5.95 -5.19 -0.03 1.09 16 9 N -0.75 -5.93 5.55 -66.41 -0.37 -6.30 16 10 C 0.70 8.75 8.41 -86.92 -0.73 8.02 16 11 O -0.57 -9.42 13.78 5.29 0.07 -9.35 16 12 N -0.68 -8.12 5.34 -14.22 -0.08 -8.19 16 13 C 0.12 1.97 6.30 -83.69 -0.53 1.44 16 14 C -0.14 -2.27 9.97 -39.39 -0.39 -2.66 16 15 C -0.11 -1.98 9.69 -39.61 -0.38 -2.36 16 16 C -0.04 -0.84 5.07 -104.59 -0.53 -1.37 16 17 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 18 C -0.51 -14.55 9.65 -34.44 -0.33 -14.89 16 19 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 22 Si 0.88 21.45 27.47 -169.99 -4.67 16.79 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 26 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 27 C -0.12 -2.10 8.69 -39.40 -0.34 -2.44 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.36 7.91 -51.93 -0.41 -0.05 16 32 H 0.08 0.40 7.18 -51.93 -0.37 0.02 16 33 H 0.08 0.40 7.65 -51.93 -0.40 0.01 16 34 H 0.14 0.81 7.50 -52.49 -0.39 0.42 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.63 5.86 -51.93 -0.30 0.33 16 37 H 0.40 2.05 8.48 -40.82 -0.35 1.71 16 38 H 0.40 3.30 8.84 -40.82 -0.36 2.94 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 42 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 45 H 0.13 2.38 6.23 -52.49 -0.33 2.05 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -35.93 384.97 -8.56 -44.49 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.22 Total: 2.83 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.18 Total: -10.53 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.33 Total: -41.33 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.63 Total: -18.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.93 -8.56 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.904 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds