Wall clock time and date at job start Tue Mar 31 2020 16:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34794 * 117.00015 * 2 1 4 4 O 1.21539 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.46951 * 120.00155 * 179.97438 * 3 2 1 6 6 C 1.50704 * 119.99845 * 359.97438 * 5 3 2 7 7 C 1.33083 * 120.00482 * 179.97438 * 5 3 2 8 8 C 1.50695 * 120.00169 * 175.12435 * 7 5 3 9 9 N 1.46507 * 109.46747 * 125.36104 * 8 7 5 10 10 C 1.34774 * 119.99776 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00282 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99934 * 180.02562 * 10 9 8 13 13 C 1.39953 * 120.00022 * 175.33580 * 12 10 9 14 14 C 1.38867 * 120.06595 * 214.92392 * 13 12 10 15 15 C 1.38114 * 119.92316 * 179.77450 * 14 13 12 16 16 C 1.38286 * 120.07362 * 0.50088 * 15 14 13 17 17 C 1.50695 * 119.93399 * 179.72789 * 16 15 14 18 18 C 1.50697 * 109.47028 * 270.02526 * 17 16 15 19 19 H 1.08000 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99916 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99890 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00252 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47511 * 89.99415 * 22 20 18 24 24 H 1.48493 * 109.47187 * 210.00188 * 22 20 18 25 25 H 1.48502 * 109.46698 * 329.99943 * 22 20 18 26 26 C 1.38286 * 120.13532 * 359.75198 * 16 15 14 27 27 C 1.38114 * 120.07134 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.46628 * 60.00473 * 1 2 3 29 29 H 1.08996 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47431 * 300.00437 * 1 2 3 31 31 H 1.09000 * 109.47334 * 244.94423 * 6 5 3 32 32 H 1.09003 * 109.47192 * 4.94490 * 6 5 3 33 33 H 1.09004 * 109.46783 * 124.94448 * 6 5 3 34 34 H 1.07999 * 119.99334 * 354.85126 * 7 5 3 35 35 H 1.08999 * 109.47237 * 245.36276 * 8 7 5 36 36 H 1.08998 * 109.47142 * 5.36668 * 8 7 5 37 37 H 0.97000 * 119.99956 * 0.02562 * 9 8 7 38 38 H 0.97002 * 120.00037 * 355.33580 * 12 10 9 39 39 H 1.08001 * 120.03850 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.96590 * 180.25692 * 15 14 13 41 41 H 1.09006 * 109.46732 * 30.02347 * 17 16 15 42 42 H 1.08991 * 109.47508 * 150.02109 * 17 16 15 43 43 H 0.97000 * 120.00130 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.96245 * 180.02562 * 26 16 15 45 45 H 1.07998 * 120.03308 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5315 1.2780 0.0006 6 6 4.3523 0.0141 0.0017 7 6 4.1357 2.4637 0.0001 8 6 5.6364 2.5447 0.1116 9 7 6.1679 3.3244 -1.0092 10 6 7.4954 3.5305 -1.1171 11 8 8.2519 3.0689 -0.2847 12 7 7.9843 4.2482 -2.1478 13 6 9.3506 4.5451 -2.2080 14 6 9.7765 5.7586 -2.7317 15 6 11.1254 6.0505 -2.7854 16 6 12.0520 5.1316 -2.3278 17 6 13.5232 5.4509 -2.3935 18 6 14.0809 4.9803 -3.7121 19 1 13.4347 4.4980 -4.4305 20 6 15.4163 5.1657 -4.0013 21 7 15.9031 4.7546 -5.1518 22 14 16.5342 5.9993 -2.7585 23 1 17.1263 4.9757 -1.8604 24 1 17.6194 6.7183 -3.4730 25 1 15.7454 6.9668 -1.9541 26 6 11.6312 3.9201 -1.8106 27 6 10.2835 3.6245 -1.7490 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.9148 -0.0531 0.9330 32 1 3.6915 -0.8484 -0.0866 33 1 5.0442 0.0294 -0.8404 34 1 3.5509 3.3677 -0.0847 35 1 5.9054 3.0284 1.0506 36 1 6.0573 1.5396 0.0868 37 1 5.5642 3.6930 -1.6731 38 1 7.3892 4.5589 -2.8480 39 1 9.0535 6.4751 -3.0929 40 1 11.4571 6.9959 -3.1887 41 1 13.6658 6.5277 -2.3022 42 1 14.0415 4.9454 -1.5787 43 1 16.8425 4.8846 -5.3552 44 1 12.3572 3.2047 -1.4537 45 1 9.9556 2.6780 -1.3453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932560233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:42 Heat of formation + Delta-G solvation = -95.077480 kcal Electronic energy + Delta-G solvation = -26282.852168 eV Core-core repulsion = 22265.012954 eV Total energy + Delta-G solvation = -4017.839213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70076 -41.48774 -39.81539 -38.00763 -37.22690 -36.19349 -35.09510 -34.71021 -32.49651 -31.72642 -29.96470 -28.70818 -28.32189 -26.85326 -24.78980 -23.79327 -23.44683 -22.31312 -21.59279 -20.28237 -19.36704 -18.93749 -18.45497 -18.40997 -17.93962 -17.45724 -16.80929 -16.73319 -16.28215 -15.95085 -15.83611 -15.40529 -15.13004 -14.84525 -14.57913 -14.48194 -14.31707 -14.24436 -14.01846 -13.86487 -13.69347 -13.46503 -13.20366 -13.08625 -12.99345 -12.55014 -12.49241 -12.23478 -11.85890 -11.85575 -11.78499 -11.64400 -11.62077 -11.27725 -10.91499 -10.76165 -10.52375 -10.09767 -9.71973 -8.77464 -8.27355 -6.32011 -0.16990 0.51325 0.61963 1.39015 1.39851 1.45945 1.52217 1.67670 1.88118 2.06384 2.37708 3.01820 3.07109 3.22884 3.50931 3.75381 3.93115 4.08948 4.19982 4.23090 4.27550 4.31088 4.36035 4.54256 4.64171 4.66431 4.68402 4.74165 4.76314 4.77975 4.97971 5.08828 5.10252 5.14975 5.23696 5.29046 5.32858 5.42629 5.43024 5.47840 5.59630 5.68186 5.94132 6.05365 6.21039 6.32885 6.57874 6.74227 6.96203 7.31408 7.46475 8.89041 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038881 B = 0.001583 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.969371 B =17686.126321 C =17859.687286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.501 3.499 4 O -0.538 6.538 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.064 4.064 8 C 0.160 3.840 9 N -0.724 5.724 10 C 0.701 3.299 11 O -0.612 6.612 12 N -0.668 5.668 13 C 0.138 3.862 14 C -0.131 4.131 15 C -0.113 4.113 16 C -0.076 4.076 17 C 0.021 3.979 18 C -0.519 4.519 19 H 0.029 0.971 20 C 0.009 3.991 21 N -0.949 5.949 22 Si 0.949 3.051 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.245 1.245 26 C -0.120 4.120 27 C -0.126 4.126 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.416 0.584 38 H 0.424 0.576 39 H 0.158 0.842 40 H 0.130 0.870 41 H 0.034 0.966 42 H 0.025 0.975 43 H 0.267 0.733 44 H 0.114 0.886 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.630 -6.422 11.085 35.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.348 3.652 4 O -0.430 6.430 5 C -0.145 4.145 6 C -0.177 4.177 7 C -0.083 4.083 8 C 0.037 3.963 9 N -0.381 5.381 10 C 0.402 3.598 11 O -0.491 6.491 12 N -0.317 5.317 13 C 0.043 3.957 14 C -0.151 4.151 15 C -0.131 4.131 16 C -0.077 4.077 17 C -0.016 4.016 18 C -0.557 4.557 19 H 0.047 0.953 20 C -0.188 4.188 21 N -0.590 5.590 22 Si 0.772 3.228 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.168 1.168 26 C -0.139 4.139 27 C -0.146 4.146 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.253 0.747 38 H 0.262 0.738 39 H 0.176 0.824 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -32.132 -6.606 11.765 34.850 hybrid contribution 0.089 0.483 -0.573 0.754 sum -32.043 -6.123 11.192 34.489 Atomic orbital electron populations 1.23582 0.74412 1.05863 1.02624 1.86574 1.25124 1.31891 1.83632 1.21634 0.90237 0.81383 0.71957 1.90860 1.67766 1.36947 1.47428 1.20874 0.88726 0.98155 1.06711 1.20906 0.99450 0.93532 1.03796 1.23598 0.95390 0.97728 0.91574 1.20391 0.88651 0.97429 0.89817 1.44792 1.04487 1.58452 1.30386 1.16011 0.82992 0.79260 0.81564 1.90943 1.57995 1.55747 1.44420 1.42230 1.06851 1.56925 1.25678 1.17374 0.82478 0.93864 1.01987 1.21023 0.95931 0.95108 1.03080 1.21006 0.92542 0.99883 0.99706 1.20177 0.96316 0.94626 0.96573 1.18641 0.90199 0.97191 0.95582 1.21190 0.94575 1.38495 1.01401 0.95253 1.25957 0.99685 0.95874 0.97312 1.70056 1.14972 1.49012 1.24945 0.85670 0.78345 0.79642 0.79112 1.19321 1.20743 1.16822 1.20985 0.95587 0.96694 1.00618 1.21170 0.91967 0.99797 1.01660 0.91848 0.84976 0.91855 0.89567 0.90160 0.89959 0.84242 0.89264 0.89419 0.74741 0.73751 0.82450 0.85230 0.94779 0.95682 0.92410 0.86826 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.57 113.37 1.20 1.42 16 2 O -0.36 -4.70 9.55 -57.05 -0.54 -5.24 16 3 C 0.50 7.83 7.88 70.10 0.55 8.38 16 4 O -0.54 -11.19 16.02 19.71 0.32 -10.87 16 5 C -0.14 -1.64 5.99 -18.73 -0.11 -1.75 16 6 C -0.12 -1.05 8.53 71.24 0.61 -0.45 16 7 C -0.06 -0.64 9.20 24.53 0.23 -0.42 16 8 C 0.16 1.93 5.95 85.63 0.51 2.44 16 9 N -0.72 -9.56 5.55 -482.30 -2.68 -12.24 16 10 C 0.70 15.83 8.41 179.06 1.51 17.34 16 11 O -0.61 -19.49 13.78 -3.99 -0.05 -19.54 16 12 N -0.67 -13.98 5.34 -317.18 -1.69 -15.67 16 13 C 0.14 4.12 6.30 38.14 0.24 4.36 16 14 C -0.13 -3.79 9.97 22.39 0.22 -3.57 16 15 C -0.11 -4.10 9.69 22.25 0.22 -3.88 16 16 C -0.08 -3.27 5.07 -19.84 -0.10 -3.38 16 17 C 0.02 1.02 4.17 29.10 0.12 1.15 16 18 C -0.52 -30.45 9.65 25.60 0.25 -30.20 16 19 H 0.03 1.92 7.98 -2.91 -0.02 1.90 16 20 C 0.01 0.51 5.47 84.66 0.46 0.97 16 21 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 22 Si 0.95 44.36 27.47 68.60 1.88 46.25 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 26 C -0.12 -4.90 9.69 22.25 0.22 -4.69 16 27 C -0.13 -4.54 8.69 22.39 0.19 -4.34 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.64 7.91 -2.39 -0.02 0.62 16 32 H 0.08 0.69 7.18 -2.39 -0.02 0.67 16 33 H 0.08 0.68 7.65 -2.38 -0.02 0.67 16 34 H 0.14 1.37 7.50 -2.91 -0.02 1.35 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.11 5.86 -2.39 -0.01 1.10 16 37 H 0.42 2.85 8.48 -92.71 -0.79 2.06 16 38 H 0.42 5.26 8.84 -92.71 -0.82 4.44 16 39 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.03 1.59 7.14 -2.38 -0.02 1.57 16 42 H 0.02 1.19 7.51 -2.39 -0.02 1.17 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 45 H 0.13 4.70 6.23 -2.91 -0.02 4.68 16 Total: -1.00 -80.53 384.97 3.21 -77.32 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.63 Total: 16.20 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 6.31 Total: -16.62 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.07 Total: -87.49 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.28 Total: -35.65 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -80.53 3.21 -77.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.756 kcal (2) G-P(sol) polarization free energy of solvation -80.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds