Wall clock time and date at job start Tue Mar 31 2020 16:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34793 * 117.00170 * 2 1 4 4 O 1.21534 * 119.99887 * 359.97438 * 3 2 1 5 5 C 1.46957 * 120.00409 * 180.02562 * 3 2 1 6 6 C 1.50702 * 119.99633 * 263.26041 * 5 3 2 7 7 C 1.33075 * 119.99926 * 83.25283 * 5 3 2 8 8 C 1.50698 * 120.00301 * 354.94796 * 7 5 3 9 9 N 1.46499 * 109.47537 * 124.90572 * 8 7 5 10 10 C 1.34774 * 119.99938 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00410 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00067 * 179.97438 * 10 9 8 13 13 C 1.39947 * 120.00428 * 184.73630 * 12 10 9 14 14 C 1.38864 * 120.06447 * 324.58317 * 13 12 10 15 15 C 1.38120 * 119.92228 * 179.72032 * 14 13 12 16 16 C 1.38277 * 120.07445 * 0.55059 * 15 14 13 17 17 C 1.50692 * 119.93348 * 179.70050 * 16 15 14 18 18 C 1.50703 * 109.47461 * 270.02335 * 17 16 15 19 19 H 1.08001 * 119.99323 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00311 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99987 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00107 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46936 * 90.00021 * 22 20 18 24 24 H 1.48494 * 109.47401 * 210.00050 * 22 20 18 25 25 H 1.48502 * 109.47112 * 330.00319 * 22 20 18 26 26 C 1.38286 * 120.13772 * 359.72429 * 16 15 14 27 27 C 1.38113 * 120.06806 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46886 * 300.00015 * 1 2 3 30 30 H 1.08999 * 109.46954 * 59.99829 * 1 2 3 31 31 H 1.08998 * 109.47142 * 269.99401 * 6 5 3 32 32 H 1.09004 * 109.47296 * 29.99406 * 6 5 3 33 33 H 1.09002 * 109.46949 * 149.99543 * 6 5 3 34 34 H 1.07999 * 119.99873 * 174.93894 * 7 5 3 35 35 H 1.08993 * 109.47244 * 4.90034 * 8 7 5 36 36 H 1.09001 * 109.46860 * 244.90421 * 8 7 5 37 37 H 0.96997 * 119.99683 * 0.02562 * 9 8 7 38 38 H 0.97001 * 119.99823 * 5.00719 * 12 10 9 39 39 H 1.08002 * 120.04049 * 359.97245 * 14 13 12 40 40 H 1.08005 * 119.96222 * 180.25568 * 15 14 13 41 41 H 1.09007 * 109.47262 * 30.02563 * 17 16 15 42 42 H 1.08998 * 109.47668 * 150.01892 * 17 16 15 43 43 H 0.97005 * 119.99852 * 179.97438 * 21 20 18 44 44 H 1.07997 * 119.96260 * 180.02562 * 26 16 15 45 45 H 1.08002 * 120.03060 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4021 2.2203 -0.0005 5 6 3.5316 1.2780 -0.0006 6 6 4.2764 1.4701 1.2953 7 6 4.2026 1.1778 -1.1453 8 6 3.4681 0.8721 -2.4252 9 7 3.7680 1.9055 -3.4193 10 6 3.2184 1.8382 -4.6481 11 8 2.4734 0.9201 -4.9314 12 7 3.4939 2.7892 -5.5625 13 6 2.8474 2.7748 -6.8036 14 6 2.5426 1.5660 -7.4153 15 6 1.8993 1.5552 -8.6375 16 6 1.5692 2.7463 -9.2574 17 6 0.8735 2.7308 -10.5940 18 6 1.9018 2.7330 -11.6957 19 1 2.9539 2.7440 -11.4522 20 6 1.4994 2.7198 -13.0143 21 7 2.3969 2.7212 -13.9757 22 14 -0.3203 2.6985 -13.4355 23 1 -0.8166 4.0929 -13.5567 24 1 -0.5222 1.9875 -14.7234 25 1 -1.0690 1.9984 -12.3609 26 6 1.8766 3.9518 -8.6535 27 6 2.5141 3.9693 -7.4284 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.4026 2.5356 1.4873 32 1 3.7105 1.0186 2.1102 33 1 5.2550 0.9951 1.2258 34 1 5.2737 1.3159 -1.1572 35 1 2.3954 0.8533 -2.2329 36 1 3.7864 -0.0993 -2.8036 37 1 4.3627 2.6377 -3.1934 38 1 4.1431 3.4814 -5.3619 39 1 2.8045 0.6353 -6.9339 40 1 1.6582 0.6153 -9.1119 41 1 0.2582 1.8345 -10.6730 42 1 0.2416 3.6143 -10.6851 43 1 2.1138 2.7115 -14.9034 44 1 1.6170 4.8804 -9.1400 45 1 2.7543 4.9111 -6.9576 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932560234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:48 Heat of formation + Delta-G solvation = -70.959569 kcal Electronic energy + Delta-G solvation = -26814.737776 eV Core-core repulsion = 22797.944394 eV Total energy + Delta-G solvation = -4016.793382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00052 -40.48520 -38.48197 -37.12506 -36.41805 -34.89119 -34.30899 -32.89270 -30.88408 -30.29900 -29.44541 -28.37595 -26.95207 -25.08987 -23.70345 -22.83308 -22.32861 -21.15167 -20.21006 -19.88992 -18.65798 -17.67571 -17.53206 -17.09990 -16.73287 -16.22120 -15.78598 -15.60880 -14.88457 -14.85995 -14.71797 -14.25255 -14.05738 -13.96378 -13.86589 -13.43230 -13.20671 -13.09574 -12.95424 -12.83132 -12.46932 -12.41491 -12.28672 -12.18590 -11.61326 -11.50040 -11.22732 -10.97104 -10.85557 -10.51961 -10.30341 -10.13836 -9.96752 -9.86966 -9.51708 -9.38075 -9.25335 -8.55287 -8.28764 -7.37501 -6.04440 -4.03083 0.87524 1.61561 1.92728 2.06599 2.28704 2.57639 3.11705 3.31334 3.39135 3.43014 3.95431 4.06398 4.21189 4.44645 4.48104 4.55404 4.71886 4.75615 4.82421 4.95583 4.97495 5.13941 5.19601 5.27485 5.34300 5.42978 5.53324 5.57760 5.70171 5.89240 5.90698 6.00111 6.02527 6.13173 6.16792 6.52042 6.62963 6.87791 6.99668 7.01290 7.08982 7.13669 7.18649 7.63731 7.65692 7.75671 7.82414 8.44546 8.53265 9.01191 9.56197 11.08479 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.001904 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.069206 B =14702.467523 C =15242.362768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.502 3.498 4 O -0.493 6.493 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.118 4.118 8 C 0.161 3.839 9 N -0.744 5.744 10 C 0.703 3.297 11 O -0.570 6.570 12 N -0.680 5.680 13 C 0.123 3.877 14 C -0.115 4.115 15 C -0.106 4.106 16 C -0.040 4.040 17 C 0.014 3.986 18 C -0.511 4.511 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.106 4.106 27 C -0.143 4.143 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.398 0.602 38 H 0.402 0.598 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -2.647 32.892 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.345 3.655 4 O -0.380 6.380 5 C -0.122 4.122 6 C -0.163 4.163 7 C -0.136 4.136 8 C 0.037 3.963 9 N -0.401 5.401 10 C 0.403 3.597 11 O -0.447 6.447 12 N -0.327 5.327 13 C 0.030 3.970 14 C -0.135 4.135 15 C -0.125 4.125 16 C -0.040 4.040 17 C -0.023 4.023 18 C -0.549 4.549 19 H 0.092 0.908 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.125 4.125 27 C -0.164 4.164 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.237 0.763 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.665 -3.229 32.486 32.851 hybrid contribution -0.426 0.809 -0.154 0.927 sum 3.240 -2.420 32.332 32.584 Atomic orbital electron populations 1.23365 0.75712 1.04195 1.02846 1.86701 1.23906 1.32591 1.83762 1.21572 0.89772 0.81992 0.72189 1.90929 1.66495 1.36096 1.44479 1.20991 0.89047 1.04019 0.98130 1.20757 0.99789 1.03360 0.92421 1.23528 1.00691 0.96923 0.92501 1.20288 0.99015 0.91975 0.85014 1.44989 1.53332 1.29936 1.11813 1.15888 0.80748 0.82907 0.80127 1.90952 1.40086 1.34691 1.78923 1.42414 1.45136 1.31000 1.14141 1.17312 1.00385 0.94380 0.84878 1.21143 1.00420 0.97089 0.94858 1.20984 0.98943 0.98419 0.94147 1.20295 0.95658 0.92175 0.95891 1.18806 0.96120 0.97360 0.90017 1.20948 0.94045 1.51002 0.88894 0.90797 1.25002 0.97471 0.94565 0.96300 1.69903 1.33426 1.50880 0.99729 0.86805 0.86112 0.78595 0.78011 1.20206 1.21297 1.18888 1.20833 0.99175 0.98316 0.94168 1.20720 1.02567 0.95675 0.97395 0.87632 0.91744 0.91456 0.90029 0.90976 0.89816 0.83757 0.91544 0.89090 0.76758 0.76321 0.85141 0.86029 0.95390 0.95861 0.92660 0.85937 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.57 101.05 1.07 1.30 16 2 O -0.35 -3.21 10.48 -40.75 -0.43 -3.63 16 3 C 0.50 4.90 5.41 34.26 0.19 5.08 16 4 O -0.49 -6.33 16.90 -19.29 -0.33 -6.66 16 5 C -0.12 -0.79 5.87 -102.89 -0.60 -1.39 16 6 C -0.11 -0.39 10.03 36.01 0.36 -0.03 16 7 C -0.12 -0.65 9.32 -36.10 -0.34 -0.99 16 8 C 0.16 1.41 5.95 -5.20 -0.03 1.38 16 9 N -0.74 -6.86 5.55 -66.42 -0.37 -7.23 16 10 C 0.70 9.61 8.41 -86.92 -0.73 8.88 16 11 O -0.57 -10.20 13.80 5.29 0.07 -10.13 16 12 N -0.68 -8.71 5.34 -14.23 -0.08 -8.79 16 13 C 0.12 2.06 6.29 -83.69 -0.53 1.54 16 14 C -0.11 -2.17 8.69 -39.39 -0.34 -2.51 16 15 C -0.11 -2.18 9.69 -39.61 -0.38 -2.56 16 16 C -0.04 -0.86 5.07 -104.59 -0.53 -1.39 16 17 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 18 C -0.51 -14.64 9.65 -34.44 -0.33 -14.97 16 19 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 22 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 26 C -0.11 -2.04 9.69 -39.61 -0.38 -2.42 16 27 C -0.14 -2.35 9.97 -39.40 -0.39 -2.74 16 28 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.26 8.11 -51.93 -0.42 -0.16 16 33 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16 34 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 35 H 0.07 0.75 6.22 -51.93 -0.32 0.42 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 2.34 8.48 -40.82 -0.35 1.99 16 38 H 0.40 3.58 8.84 -40.82 -0.36 3.22 16 39 H 0.13 2.47 6.25 -52.49 -0.33 2.14 16 40 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 41 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 42 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 45 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 388.34 15.07 5.85 5.85 Total: -1.00 -37.27 388.34 -8.72 -45.99 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.35 Total: 3.34 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.20 Total: -8.73 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.33 Total: -43.00 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.68 Total: -20.43 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.27 -8.72 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.974 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds